R Data retrieval from OBIS & GBIF

This is an short tutorial to show how to download OBIS/GBIF occurrence data for multiple species. The code has been written to be used in H2020 Mission Atlantic (No 862428) Project Task 3.4.

The tutorial has been developed by Mireia Valle (github profile: MireiaValle, email: mvalle@azti.es ) based on original code for sourcing OBIS and GBIF from Guillem Chust (email: gchust@azti.es ) and some adaptations from Eduardo Ramirez.

Affiliation: AZTI, Marine Research, Basque Research and Technology Alliance (BRTA). Txatxarramendi ugartea z/g, 48395 Sukarrieta - Bizkaia, Spain

Simple

Date (Publication)
Credit
AZTI, Marine Research (Spain)
Originator
  AZTI, Marine Research - MireiaValle
Originator
  AZTI, Marine Research - Eduardo Ramirez
Originator
  AZTI, Marine Research - Guillem Chust
Thèmes Sextant
  • /Biological Environment
GEMET - INSPIRE themes, version 1.0
  • Species distribution
Mission Atlantic - Resources
  • Tool
  • MISSION ATLANTIC Results
Mission Atlantic - Case Studies
  • Celtic Seas
  • South Brazilian Shelf
  • Atlantic Ocean
  • Canary Current system
  • Norwegian Sea
  • Southern Benguela
  • South Mid-Atlantic Ridge
  • North Mid-Atlantic Ridge
Mission Atlantic - BODC Parameters
  • /Biological oceanography
Mission Atlantic - Data type (DMP)
  • Biological data
Mission Atlantic - Work Package
  • WP3 Pelagic Mapping
Access constraints
License
Use constraints
License
Spatial representation type
Grid
Metadata language
English
Character set
UTF8
Topic category
  • Oceans
  • Biota
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S
E
W
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OnLine resource
GitHub ( WWW:LINK )
Hierarchy level
Dataset

Conformance result

Date (Publication)
2010-12-08
Explanation
See the referenced specification
File identifier
38ccabab-9d66-4470-bda8-3482629066ac XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2024-09-17T07:42:20.186727Z
Metadata standard name
ISO 19115:2003/19139 - SEXTANT
Metadata standard version
1.0
Point of contact
  Ifremer - Sextant
ZI Pointe du Diable , Plouzane , Brittany , 29280 , France
https://sextant.ifremer.fr/eng
 
 

Overviews

overview

Spatial extent

N
S
E
W
thumbnail


Keywords

GEMET - INSPIRE themes, version 1.0
Species distribution
Mission Atlantic - BODC Parameters
/Biological oceanography
Mission Atlantic - Case Studies
Atlantic Ocean Canary Current system Celtic Seas North Mid-Atlantic Ridge Norwegian Sea South Brazilian Shelf South Mid-Atlantic Ridge Southern Benguela
Mission Atlantic - Data type (DMP)
Biological data
Mission Atlantic - Resources
MISSION ATLANTIC Results Tool
Mission Atlantic - Work Package
WP3 Pelagic Mapping
Thèmes Sextant
/Biological Environment

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