Date (Creation)

2021-12-17

Date (Publication)

2022-01-27

Identifier

FR-330-715-368-00032-IFR_BIOINFO_DNA_SEQ_CRASSOSTREA_OsHV-1

Credit

IFREMER, Unité Adaptation Santé des Invertébrés Marins (ASIM)

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

Type de jeux de donnée ODATIS

• /Sequences

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

CC-BY-NC (Creative Commons - Attribution, Pas d'utilisation commerciale)

Access constraints

License

Use constraints

License

Metadata language

English

Character set

UTF8

Begin date

2021-05-24

End date

2022-08-31

Supplemental Information

Suivi des mortalités d'huitres pendant les épisodes de mortalité d'huitres, été 2021

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

• ( )

OnLine resource

/home/ref-bioinfo/ifremer/sg2m/gt-huitre-viral-diversity ( NETWORK:LINK )

OnLine resource

Digital Object Identifier (DOI) ( WWW:LINK-1.0-http--metadata-URL )

Hierarchy level

Dataset

Statement

C. gigas oysters were deposited in 4 oyster basins: La Floride (Marennes Oleron bay), Grahude (Arcachon bay), Rade de Brest and Thau lagoon. During mortality events caused by OsHV-1, the moribund oysters were sampled. A part of the moribund oysters was used to perform DNA extractions (Magattract kit). The extracted DNA was then sequenced using the NovaSeq 6000 technology on the Genome Quebec sequencing platform. (see metadata)

File identifier

e12a5d05-cc95-407f-b0f7-c86e79cc5b3a XML

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2024-02-28T15:31:44.67Z

Metadata standard name

ISO 19115:2003/19139 - SEXTANT

Metadata standard version

1.0