2023
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This visualization product displays the color of litter in percent per net per year from specific protocols different from research and monitoring protocols. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10). A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter. European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization. A filter is applied to represent only micro-litter sampled according to a very specific protocol such as the Volvo Ocean Race (VOR) or Oceaneye. To calculate percentages for each color, formula applied is: Color (%) = (∑number of particles of each color)*100 / (∑number of particles of all color) When the number of microlitters was not filled or zero, the percentage could not be calculated. Standard vocabularies for microliter colors are taken from Seadatanet's H04 library (https://vocab.seadatanet.org/v_bodc_vocab_v2/search.asp?lib=H04) Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
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Fronts are ubiquitous discrete features of the global ocean often associated with enhanced vertical velocities, in turn boosting primary production and so forth. Fronts thus form dynamical and ephemeral ecosystems where numerous species meet across all trophic levels. Fronts are also targeted by fisheries. Capturing ocean fronts and studying their long-term variability in relation with climate change is thus key for marine resource management and spatial planning. The Mediterranean Sea and the Southwest Indian Ocean are natural laboratories to study front-marine life interactions due to their energetic flow at sub-to-mesoscales, high biodiversity (including endemic and endangered species) and numerous conservation initiatives. Based on remotely-sensed Sea Surface Temperature and Height, we compute thermal fronts (2003-2020) and attracting Lagrangian Coherent Structures (1994-2020), in both regions over several decades. We advocate for the combined use of both thermal fronts and attracting Lagrangian Coherent Structures to study front-marine life interactions. The resulting front database differs from other alternatives by its high spatio-temporal resolution, long time coverage, and relevant thresholds defined for ecological provinces.
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This visualization product displays the type of litter in percent per net per year from specific protocols different from research and monitoring protocols. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10). A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter. European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization. A filter is applied to represent only micro-litter sampled according to a very specific protocol such as the Volvo Ocean Race (VOR) or Oceaneye. To calculate percentages for each type, formula applied is: Type (%) = (∑number of particles of each type)*100 / (∑number of particles of all type) When the number of microlitters was not filled or zero, the percentage could not be calculated. Standard vocabularies for microliter types are taken from Seadatanet's H01 library (https://vocab.seadatanet.org/v_bodc_vocab_v2/search.asp?lib=H01) Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
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This visualization product displays the size of litter in percent per net per year from specific protocols different from research and monitoring protocols. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10). A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter. European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization. A filter is applied to represent only micro-litter sampled according to a very specific protocol such as the Volvo Ocean Race (VOR) or Oceaneye. To calculate percentages for each size, formula applied is: Size (%) = (∑number of particles of each size)*100 / (∑number of particles of all size) When the number of microlitters was not filled or zero, the percentage could not be calculated. Standard vocabularies for microliter sizes are taken from Seadatanet's H03 library (https://vocab.seadatanet.org/v_bodc_vocab_v2/search.asp?lib=H03) Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
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'''This product has been archived''' This dataset provide a times series of gap free map of Sea Surface Temperature (SST) foundation at high resolution on a 0.10 x 0.10 degree grid (approximately 10 x 10 km) for the Global Ocean, every 24 hours. Whereas along swath observation data essentially represent the skin or sub-skin SST, the Level 4 SST product is defined to represent the SST foundation (SSTfnd). SSTfnd is defined within GHRSST as the temperature at the base of the diurnal thermocline. It is so named because it represents the foundation temperature on which the diurnal thermocline develops during the day. SSTfnd changes only gradually along with the upper layer of the ocean, and by definition it is independent of skin SST fluctuations due to wind- and radiation-dependent diurnal stratification or skin layer response. It is therefore updated at intervals of 24 hrs. SSTfnd corresponds to the temperature of the upper mixed layer which is the part of the ocean represented by the top-most layer of grid cells in most numerical ocean models. It is never observed directly by satellites, but it comes closest to being detected by infrared and microwave radiometers during the night, when the previous day's diurnal stratification can be assumed to have decayed. The processing combines the observations of multiple polar orbiting and geostationary satellites, embedding infrared of microwave radiometers. All these sources are intercalibrated with each other before merging. A ranking procedure is used to select the best sensor observation for each grid point. An optimal interpolation is used to fill in where observations are missing. '''DOI (product) :''' https://doi.org/10.48670/mds-00321
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This visualization product displays the number of Marine Strategy Framework Directive (MSFD) monitoring surveys and the associated temporal coverage per beach. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale. Preliminary processing were necessary to harmonize all the data: - Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring; - Selection of MSFD surveys only (exclusion of other monitoring, cleaning and research operations); - Exclusion of beaches without coordinates. More information is available in the attached documents. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.
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Species distribution models (Random Forest) predicting the distribution of mixed cold-water coral community (Coral Garden) assemblage in the Celtic Sea. This community is considered ecologically coherent according to the cluster analysis conducted by Parry et al. (2015) on image sample. Modelling its distribution complements existing work on their definition and offers a representation of the extent of the areas of the North East Atlantic where they can occur based on the best available knowledge. This work was performed at the University of Plymouth in 2021.
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This visualization product displays the location of all the surveys present in the EMODnet marine litter database (MLDB). The different fishing gears used are represented by different colors. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during fishing bottom trawl surveys. Unlike other EMODnet seafloor litter products, all trawls surveyed since 2006 are included in this map even if the wingspread and/or the distance are unknown. Only surveys with an unknown number of items were excluded from this product. More information on data processing and calculation are detailed in the document attached. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.
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The data sets presented here result from the long-term monitoring of individual growth patterns in anchovy and sardine in the Bay of Biscay, from 2000 to 2018. They derived from the PELGAS survey series (Doray et al., 2018), which monitors annually the Bay of Biscay pelagic ecosystem since 2000. The survey is performed in May during the peak spawning of anchovy and main spawning of sardine. Among the many data collected, anchovy and sardine populations are assessed by combining acoustic records with pelagic trawl hauls catches and ICES survey protocoles are used, as detailed in Doray et al. (2021). Briefly, fish acoustic backscatter are recorded along survey transect lines and pelagic trawl hauls undertaken opportunistically to identify echotraces to species and collect fish samples for acquiring biometric data. At each trawl haul and for each species, a random subsample of individuals is taken to establish the species’ length distributions. For anchovy and sardine, this subsample is further subsampled, spanning the whole length range, to take individual fish measurements. These amount to extracting otoliths and measuring individuals’ age, length, weight, sexual maturity and other parameters. Individual measurements are taken on fourty individuals of anchovy and sardine when the species are present in the catch. For each individual fish, the two otolith sagittae are extracted on board, mounted in leukit for age reading on board when permitting and/or on land in the laboratory. Growth patterns in the otoliths were analysed on land with a binocular stereomicroscope under reflected natural light. For anchovy, otoliths’ growth was measured for all individuals in all the hauls. For sardine, trawl hauls were selected and all individual otoliths were measured in each selected haul. The selection was made using the geographical stratification defined in Petitgas et al. (2018) based on the ecosystem spatial structure. An average of two to three hauls in each of the four strata were selected per year. The otoliths mounted in leukit were imaged and growth-at-age in the otoliths was measured with the software TNPC (Traitement numérique des pièces calcifiées: Mahé et al., 2009). Under the binocular microscope and natural light, the otoliths showed hyaline (aragonite-poor) rings corresponding to winter periods of low growth and between the rings, white opaque (aragonite-rich) portions corresponding to annual growth periods. The annual ring determination, the age assignment and the measurement of annual ring diameters followed ICES protocoles and guidelines for anchovy and sardine (ICES, 2010; 2011). The age was estimated as the number of hyaline rings. If the edge was hyaline, it was counted as a ring as a hyaline edge observed within the first half of the year is assumed to represent the last winter. The diameter of each annual ring was measured from middle of the hyaline ring on one side to the middle of the ring on the opposite side along the major elongated axis of the otolith and passing through its centre. The distance was expressed in mm after calibration of the stereomiscroscope and the pixel images. Such diameter corresponded to growth-at-age. Ages 0 to 4 were considered (diameters R1 to R5). The total diameter of the otolith was also measured. The data sets span 19 years, from 2000 to 2018 and comprise 20,186 and 8,624 individual fish analyzed at 535 and 235 trawl hauls for anchovy and sardine, respectively. These data sets were used by Boëns et al. (2021 and 2023) to analyse changes in growth patterns and growth-selective mortality at age in anchovy and sardine under environmental and fishing pressures. References: Doray, M., Boyra, G. and Van Der Kooij, J. (eds) (2021). ICES Survey Protocols – Manual for acoustic surveys coordinated under ICES Working Group on Acoustic and Egg Surveys for Small Pelagic Fish (WGACEGG). 1st Edition. ICES Techniques in Marine Environmental Sciences, 64. https://doi.org/10.17895/ices.pub.7462 Doray, M., Petitgas, P., Romagnan, J.-B., Huret, M., Duhamel, E., Dupuy, Ch., Spitz, J., Authier, M., Sanchez, F., Berger, L., Doremus, G., Bourriau, P., Grellier, P. and Masse, J. (2018). The PELGAS survey: ship-based integrated monitoring of the Bay of Biscay pelagic ecosystem. Progress In Oceanography, 166, 15-29. https://doi.org/10.1016/j.pocean.2017.09.015 ICES (2010). Report of the Workshop on Age reading of European anchovy (WKARA), 9-13 November 2009, Sicily, Italy. ICES CM 2009/ACOM: 43. 122 pp. https://doi.org/10.17895/ices.pub.19280525 ICES (2011). Report of the Workshop on Age Reading of European Atlantic Sardine (WKARAS), 14-18 February 2011, Lisbon, Portugal. ICES CM 2011/ACOM:42. 91 pp. https://doi.org/10.17895/ices.pub.19280855 Petitgas, P., Huret, M., Dupuy, Ch., Spitz, J., Authier, M., Romagnan, J.-B. and Doray, M. (2018). Ecosystem spatial structure revealed by integrated survey data. Progress In Oceanography, 166, 189-198. https://doi.org/10.1016/j.pocean.2017.09.012 Mahe, K., Bellail, R., Dufour, J.-L., Boiron-Leroy, A., Dimeet, J., Duhamel, E., Elleboode, R., Felix, J., Grellier, P., Huet, J., Labastie, J., Le Roy, D., Lizaud, O., Manten, M.-L., Martin, S., Metral, L., Nedelec, D., Verin, Y. and Badts, V. (2009). Synthèse française des procédures d'estimation d'âge / French summary of age estimation procedures. https://archimer.ifremer.fr/doc/00000/7294/ Boëns, A., Grellier, P., Lebigre, Ch. and Petitgas, P. (2021). Determinants of growth and selective mortality in anchovy and sardine in the Bay of Biscay. Fisheries Research, 239, 105947. https://doi.org/10.1016/j.fishres.2021.105947 Boëns, A., Ernande, B., Petitgas, P. and Lebigre, Ch. (2023). Different mechanisms underpin the decline in growth of anchovies and sardines of the Bay of Biscay. Evolutionary Applications, 16: 1393–1411. https://doi.org/10.1111/eva.13564
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Moving 6-year analysis of Water body silicate in the Mediterranean Sea for each season: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Every year of the time dimension corresponds to the 6-year centered average of the season. 6-years periods span from 1970-1975 until 2017-2022. Data Sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Units: umol/l. Description of DIVA analysis: The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.9, using GEBCO 30sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps grids is dx=dy=0.125 degrees (around 13.5km and 10.9km accordingly). The vertical resolution is 25 depth levels: [0.,5.,10.,20.,30.,50.,75.,100.,125.,150.,200.,250.,300.,400.,500.,600.,700.,800.,900.,1000.,1100.,1200.,1300.,1400.,1500.]. The horizontal correlation length is 200km. The vertical correlation length (in meters) was set twices the vertical resolution: [10.,10.,20.,20.,40.,50.,50.,50.,50.,100.,100.,100.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.]. Duplicates check was performed using the following criteria for space and time: dlon=0.001deg., dlat=0.001deg., ddepth=1m, dtime=1hour, dvalue=0.1. The error variance (epsilon2) was set equal to 1 for profiles and 10 for time series to reduce the influence of close data near the coasts. An anamorphosis transformation was applied to the data (function DIVAnd.Anam.loglin) to avoid unrealistic negative values: threshold value=200. A background analysis field was used for all years (1970-2022) with correlation length equal to 600km and error variance (epsilon2) equal to 20. Quality control of the observations was applied using the interpolated field (QCMETHOD=3). Residuals (differences between the observations and the analysis (interpolated linearly to the location of the observations) were calculated. Observations with residuals outside the minimum and maximum values of the 99% quantile were discarded from the analysis. Originators of Italian data sets-List of contributors: - Brunetti Fabio (OGS) - Cardin Vanessa, Bensi Manuel doi:10.6092/36728450-4296-4e6a-967d-d5b6da55f306 - Cardin Vanessa, Bensi Manuel, Ursella Laura, Siena Giuseppe doi:10.6092/f8e6d18e-f877-4aa5-a983-a03b06ccb987 - Cataletto Bruno (OGS) - Cinzia Comici Cinzia (OGS) - Civitarese Giuseppe (OGS) - DeVittor Cinzia (OGS) - Giani Michele (OGS) - Kovacevic Vedrana (OGS) - Mosetti Renzo (OGS) - Solidoro C.,Beran A.,Cataletto B.,Celussi M.,Cibic T.,Comici C.,Del Negro P.,De Vittor C.,Minocci M.,Monti M.,Fabbro C.,Falconi C.,Franzo A.,Libralato S.,Lipizer M.,Negussanti J.S.,Russel H.,Valli G., doi:10.6092/e5518899-b914-43b0-8139-023718aa63f5 - Celio Massimo (ARPA FVG) - Malaguti Antonella (ENEA) - Fonda Umani Serena (UNITS) - Bignami Francesco (ISAC/CNR) - Boldrini Alfredo (ISMAR/CNR) - Marini Mauro (ISMAR/CNR) - Miserocchi Stefano (ISMAR/CNR) - Zaccone Renata (IAMC/CNR) - Lavezza, R., Dubroca, L. F. C., Ludicone, D., Kress, N., Herut, B., Civitarese, G., Cruzado, A., Lefèvre, D.,Souvermezoglou, E., Yilmaz, A., Tugrul, S., and Ribera d'Alcala, M.: Compilation of quality controlled nutrient profiles from the Mediterranean Sea, doi:10.1594/PANGAEA.771907, 2011.
Catalogue PIGMA