DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron

This product displays for DDT, DDE, and DDD, median values of the last 6 available years that have been measured per matrix and are present in EMODnet regional contaminants aggregated datasets, v2022. The median values ranges are derived from the following percentiles: 0-25%, 25-75%, 75-90%, >90%. Only "good data" are used, namely data with Quality Flag=1, 2, 6, Q (SeaDataNet Quality Flag schema). For water, only surface values are used (0-15 m), for sediment and biota data at all depths are used.

This visualization product displays plastic bags density per trawl. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during fishing bottom trawl surveys. In cases where the wingspread and/or number of items were unknown, data could not be used because these fields are needed to calculate the density. Data collected before 2011 are affected by this filter. When the distance reported in the data was null, it was calculated from: - the ground speed and the haul duration using this formula: Distance (km) = Haul duration (h) * Ground speed (km/h); - the trawl coordinates if the ground speed and the haul duration were not filled in. The swept area is calculated from the wingspread (which depends on the fishing gear type) and the distance trawled: Swept area (km²) = Distance (km) * Wingspread (km) Densities have been calculated on each trawl and year using the following computation: Density of plastic bags (number of items per km²) = ∑Number of plastic bags related items / Swept area (km²) Percentiles 50, 75, 95 & 99 have been calculated taking into account data for all years. The list of selected items for this product is attached to this metadata. Information on data processing and calculation is detailed in the attached methodology document. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.

'''Short description:''' Altimeter satellite gridded Sea Level Anomalies (SLA) computed with respect to a twenty-year [1993, 2012] mean. The SLA is estimated by Optimal Interpolation, merging the L3 along-track measurement from the different altimeter missions available. Part of the processing is fitted to the European Sea area. (see QUID document or http://duacs.cls.fr [http://duacs.cls.fr] pages for processing details). The product gives additional variables (i.e. Absolute Dynamic Topography and geostrophic currents (absolute and anomalies)). It serves in near-real time applications. This product is processed by the DUACS multimission altimeter data processing system. '''DOI (product) :''' https://doi.org/10.48670/moi-00142

This product displays for Fluoranthene, median values of the last 6 available years that have been measured per matrix and are present in EMODnet regional contaminants aggregated datasets, v2022. The median values ranges are derived from the following percentiles: 0-25%, 25-75%, 75-90%, >90%. Only "good data" are used, namely data with Quality Flag=1, 2, 6, Q (SeaDataNet Quality Flag schema). For water, only surface values are used (0-15 m), for sediment and biota data at all depths are used.

In this study, we examined the capacity of two bi-parental progenies of the black-lip pearl oyster, Pinctada margaritifera, to increase their later-life thermal tolerance and performance, through developmental thermal priming. Embryos (3-24 hours post-fertilization) were incubated until hatching at either control (28°C; naive) or warm (32°C; primed; ecological extremes) temperatures, and raised four months under common conditions at 28°C.

Opportunistic macroalgae blooms (green tides) data are collected during monitoring surveys on the English Channel / Bay of Biscay French coasts since 2008 (Quadrige program code : BLOOMS). Protocols are implemented in the European Water Framework Directive.

Metabarcoding data were produced based on samples gathered at Ifremer where the DNA was extracted; PCR libraries were built at Ifremer and Genseq; libraries were sequenced at Novogene. The data to download contain: 1/d emultiplexed raw data, 2/ metadata, and 3) Scripts to process data and taxonomically assign DNA sequences 4) Rmarkdown to analyze communities.

'''DEFINITION''' The OMI_EXTREME_SST_NORTHWESTSHELF_sst_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable sea surface temperature measured by in situ buoys at depths between 0 and 5 meters. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The percentiles are temporally averaged, and the spatial evolution is displayed, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Sea surface temperature (SST) is one of the essential ocean variables affected by climate change (mean SST trends, SST spatial and interannual variability, and extreme events). In Europe, several studies show warming trends in mean SST for the last years (von Schuckmann, 2016; IPCC, 2021, 2022). An exception seems to be the North Atlantic, where, in contrast, anomalous cold conditions have been observed since 2014 (Mulet et al., 2018; Dubois et al. 2018; IPCC 2021, 2022). Extremes may have a stronger direct influence in population dynamics and biodiversity. According to Alexander et al. 2018 the observed warming trend will continue during the 21st Century and this can result in exceptionally large warm extremes. Monitoring the evolution of sea surface temperature extremes is, therefore, crucial. The North-West Self area comprises part of the North Atlantic, where this refreshing trend has been observed, and the North Sea, where a warming trend has been taking place in the last three decades (e.g. Høyer and Karagali, 2016). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The mean 99th percentiles showed in the area present a range from 14-15ºC in the North of the British Isles, 16-19ºC in the West of the North Sea to 19-20ºC in the Helgoland Bight. The standard deviation ranges from 0.7-0.8ºC in the North of the British Isles, 0.6-2ºC in the West of the North Sea to 0.8-3ºC in in the Helgoland Bight. Results for this year show positive moderate anomalies (+0.3/+1.0ºC) in all the positions except in one station in the West of the Noth Sea where the anomaly is negative (-0.3ºC), all of them inside the standard deviation margin. '''DOI (product):''' https://doi.org/10.48670/moi-00274

The main objective of the SWIM Level 3 (L3) product is to provide global gridded wave statistics from the along-track directional wave spectra measures, as observed with SWIM instrument onboard CFOSAT. CFOSAT (Chinese French Ocean SATellite) is a french-chinese mission launched in 2018, whose aim is to provide wind (SCAT instrument) and wave (SWIM instrument) measurements over the sea surface. The processing uses the integrated parameters (wave length, significant wave height, direction) of the wave systems associated with the individual partitions retrieved from SWIM wave spectra, computing monthly statistics such as distribution, min, max, mean and median over a global 2 degree resolution grid. Three sub-products are generated separately for each SWIM beam (from 4° to 10°) from respectively the SWIM Level 2 spectra produced by the CWWIC center (CNES), the SWIM Level 2S spectra produced by the IWWOC center (Ifremer) and forecast spectra produced from WaveWatch3 wave model at Ifremer as an independent source for comparison. The SWIM level 3 dataset is generated in delayed mode. It is currently mainly meant as a validation dataset aiming at inter-comparing the different SWIM Level 2 between each other, with an independent model (here WaveWatch3) or other external similar wave statistics products. The SWIM L3 dataset is generated and distributed by Ifremer / CERSAT in the frame of the Ifremer Wind and Wave Operation Center (IWWOC) co-funded by Ifremer and CNES and dedicated to the processing of the delayed mode data of CFOSAT mission.