Classification of the Atlantic Ocean seabed into broad-scale benthic habitats employing a hierarchical top-down clustering approach aimed at informing Marine Spatial Planning. This work was performed at the University of Plymouth in 2021 with data provided by a wide group of partners representing the nations surrounding the Atlantic Ocean. It classifies continuous environmental data into discrete classes that can be compared to observed biogeographical patterns at various scales. It has 3 levels of classification. For ease of use, a layer is provided for each level. Level 1 has 4 classes. Level 2 has 15 classes nested within level 1. Layers indices are 2 digits (1[level1 class index]1[level 2 class index]). Level 3 has 157 classes nested within level 2 and class names have 4 digits (1digit[level1 class index]1[level 2 class index]2[level 3 class index]). Note that the classification was performed for the whole world and thus it has more classes than in the presented layer.

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification and contaminants. The chemicals chosen EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity and contaminants. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on potential hazardous substances, despite the fact that some data might not be related to pollution (e.g. collected by deep corer). Temperature, salinity and additional parameters are included when available. It covers the Mediterranean Sea. Data were harmonised and validated by the ‘Hellenic Centre for Marine Research, Hellenic National Oceanographic Data Centre (HCMR/HNODC)’ in Greece. The dataset contains water, sediment and biota profiles and timeseries. The temporal coverage is 1974–2020 for water measurements, 1971–2020 for sediment measurements and 1979-2021 for biota measurements. Regional datasets concerning contaminants are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.6092/8b52e8d7-dc92-4305-9337-7634a5cae3f4). Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/. The harmonised dataset can be downloaded as as an ODV spreadsheet, which is composed of a metadata header followed by tab separated values. This spreadsheet can be imported into ODV Software for visualisation (more information can be found at: https://www.seadatanet.org/Software/ODV). In addition, the same dataset is offered also as a txt file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms into subcomponents (substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications (e.g. LibreOffice Calc).

'''DEFINITION''' The OMI_EXTREME_SL_NORTHWESTSHELF_slev_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable sea level measured by tide gauges along the coast. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The annual percentiles referred to annual mean sea level are temporally averaged and their spatial evolution is displayed in the dataset omi_extreme_sl_northwestshelf_slev_mean_and_anomaly_obs, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Sea level (SLEV) is one of the Essential Ocean Variables most affected by climate change. Global mean sea level rise has accelerated since the 1990’s (Abram et al., 2019, Legeais et al., 2020), due to the increase of ocean temperature and mass volume caused by land ice melting (WCRP, 2018). Basin scale oceanographic and meteorological features lead to regional variations of this trend that combined with changes in the frequency and intensity of storms could also rise extreme sea levels up to one metre by the end of the century (Vousdoukas et al., 2020, Tebaldi et al., 2021). This will significantly increase coastal vulnerability to storms, with important consequences on the extent of flooding events, coastal erosion and damage to infrastructures caused by waves (Boumis et al., 2023). The increase in extreme sea levels over recent decades is, therefore, primarily due to the rise in mean sea level. Note, however, that the methodology used to compute this OMI removes the annual 50th percentile, thereby discarding the mean sea level trend to isolate changes in storminess. The North West Shelf area presents positive sea level trends with higher trend estimates in the German Bight and around Denmark, and lower trends around the southern part of Great Britain (Dettmering et al., 2021). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The completeness index criteria is fulfilled by 33 stations in 2023, one less than in 2022 (32). The mean 99th percentiles present a large spatial variability related to the tidal pattern, with largest values found in East England and at the entrance of the English channel, and lowest values along the Danish and Swedish coasts, ranging from the 3.08 m above mean sea level in Immingan (East England) to 0.45 m above mean sea level in Tregde (Norway). The standard deviation of annual 99th percentiles ranges between 2-3 cm in the western part of the region (e.g.: 2 cm in Harwich, 3 cm in Dunkerke) and 7-8 cm in the eastern part and the Kattegat (e.g. 8 cm in Stenungsund, Sweden). The 99th percentile anomalies for 2023 show overall slightly negative values except in the Kattegat (Eastern part), with maximum significant values of +11 cm in Hornbaek (Denmark), and +10 cm in Ringhals (Sweden). '''DOI (product):''' https://doi.org/10.48670/moi-00272

'''DEFINITION''' The OMI_EXTREME_WAVE_NORTHWESTSHELF_swh_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable significant wave height (swh) measured by in situ buoys. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The percentiles are temporally averaged, and the spatial evolution is displayed, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Projections on Climate Change foresee a future with a greater frequency of extreme sea states (Stott, 2016; Mitchell, 2006). The damages caused by severe wave storms can be considerable not only in infrastructure and buildings but also in the natural habitat, crops and ecosystems affected by erosion and flooding aggravated by the extreme wave heights. In addition, wave storms strongly hamper the maritime activities, especially in harbours. These extreme phenomena drive complex hydrodynamic processes, whose understanding is paramount for proper infrastructure management, design and maintenance (Goda, 2010). In recent years, there have been several studies searching possible trends in wave conditions focusing on both mean and extreme values of significant wave height using a multi-source approach with model reanalysis information with high variability in the time coverage, satellite altimeter records covering the last 30 years and in situ buoy measured data since the 1980s decade but with sparse information and gaps in the time series (e.g. Dodet et al., 2020; Timmermans et al., 2020; Young & Ribal, 2019). These studies highlight a remarkable interannual, seasonal and spatial variability of wave conditions and suggest that the possible observed trends are not clearly associated with anthropogenic forcing (Hochet et al. 2021, 2023). In the North Atlantic, the mean wave height shows some weak trends not very statistically significant. Young & Ribal (2019) found a mostly positive weak trend in the European Coasts while Timmermans et al. (2020) showed a weak negative trend in high latitudes, including the North Sea and even more intense in the Norwegian Sea. For extreme values, some authors have found a clearer positive trend in high percentiles (90th-99th) (Young et al., 2011; Young & Ribal, 2019). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The mean 99th percentiles showed in the area present a wide range from 2.5 meters in the English Channel with 0.3m of standard deviation (std), 3-5m in the southern and central North Sea with 0.3-0.6m of std, 4 meters in the Skagerrak Strait with 0.6m of std, 6-7m in the northern North Sea with 0.4-0.5m of std to 8 meters in the NorthWest of the British Isles with 0.8-1.0m of std. Results for this year show either low positive or negative anomalies between -0.3m and +0.4m, inside the margin of the standard deviation, in the English Channel, the Skagerrak Strait and the southern and central North Sea except in the station 6200046 with a positive anomaly of 0.8m and a slight negative anomaly (-0.1/-0.5m) inside the margin of the std in the NorthWest of the British Isles and the northern North Sea. '''DOI (product):''' https://doi.org/10.48670/moi-00270

DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron

'''DEFINITION''' The sea level ocean monitoring indicator has been presented in the Copernicus Ocean State Report #8. The ocean monitoring indicator on regional mean sea level is derived from the DUACS delayed-time (DT-2024 version, “my” (multi-year) dataset used when available) sea level anomaly maps from satellite altimetry based on a stable number of altimeters (two) in the satellite constellation. These products are distributed by the Copernicus Climate Change Service and the Copernicus Marine Service (SEALEVEL_GLO_PHY_CLIMATE_L4_MY_008_057). The time series of area averaged anomalies correspond to the area average of the maps in the Irish-Biscay-Iberian (IBI) Sea weighted by the cosine of the latitude (to consider the changing area in each grid with latitude) and by the proportion of ocean in each grid (to consider the coastal areas). The time series are corrected from regional mean GIA correction (weighted GIA mean of a 27 ensemble model following Spada et Melini, 2019). The time series are adjusted for seasonal annual and semi-annual signals and low-pass filtered at 6 months. Then, the trends/accelerations are estimated on the time series using ordinary least square fit.The trend uncertainty is provided in a 90% confidence interval. It is calculated as the weighted mean uncertainties in the region from Prandi et al., 2021. This estimate only considers errors related to the altimeter observation system (i.e., orbit determination errors, geophysical correction errors and inter-mission bias correction errors). The presence of the interannual signal can strongly influence the trend estimation considering to the altimeter period considered (Wang et al., 2021; Cazenave et al., 2014). The uncertainty linked to this effect is not considered. ""CONTEXT "" Change in mean sea level is an essential indicator of our evolving climate, as it reflects both the thermal expansion of the ocean in response to its warming and the increase in ocean mass due to the melting of ice sheets and glaciers (WCRP Global Sea Level Budget Group, 2018). At regional scale, sea level does not change homogenously. It is influenced by various other processes, with different spatial and temporal scales, such as local ocean dynamic, atmospheric forcing, Earth gravity and vertical land motion changes (IPCC WGI, 2021). The adverse effects of floods, storms and tropical cyclones, and the resulting losses and damage, have increased as a result of rising sea levels, increasing people and infrastructure vulnerability and food security risks, particularly in low-lying areas and island states (IPCC, 2022a). Adaptation and mitigation measures such as the restoration of mangroves and coastal wetlands, reduce the risks from sea level rise (IPCC, 2022b). In IBI region, the RMSL trend is modulated by decadal variations. As observed over the global ocean, the main actors of the long-term RMSL trend are associated with anthropogenic global/regional warming. Decadal variability is mainly linked to the strengthening or weakening of the Atlantic Meridional Overturning Circulation (AMOC) (e.g. Chafik et al., 2019). The latest is driven by the North Atlantic Oscillation (NAO) for decadal (20-30y) timescales (e.g. Delworth and Zeng, 2016). Along the European coast, the NAO also influences the along-slope winds dynamic which in return significantly contributes to the local sea level variability observed (Chafik et al., 2019). ""KEY FINDINGS "" Over the [1999/02/20 to 2025/10/18] period, the area-averaged sea level in the IBI area rises at a rate of 5.0 ± 0.8 mm/yr with an acceleration of 0.29 ± 0.06 mm/yr². This trend estimation is based on the altimeter measurements corrected from global GIA correction (Spada et Melini, 2019) to consider the ongoing movement of land. The TOPEX-A is no longer included in the computation of regional mean sea level parameters (trend and acceleration) with version 2024 products due to potential drifts, and ongoing work aims to develop a new empirical correction. Calculation begins in February 1999 (the start of the TOPEX-B period). '''DOI (product):''' https://doi.org/10.48670/moi-00252

'''DEFINITION''' The ocean monitoring indicator on mean sea level has been presented in the Copernicus Ocean State Report #8. The ocean monitoring indicator on mean sea level is derived from the DUACS delayed-time (DT-2024 version, “my” (multi-year) dataset used when available) sea level anomaly maps from satellite altimetry based on a stable number of altimeters (two) in the satellite constellation. These products are distributed by the Copernicus Climate Change Service and by the Copernicus Marine Service (SEALEVEL_GLO_PHY_CLIMATE_L4_MY_008_057). The time series of area averaged anomalies correspond to the area average of the maps in the Global Ocean weighted by the cosine of the latitude (to consider the changing area in each grid with latitude) and by the proportion of ocean in each grid (to consider the coastal areas). The time series are corrected from global GIA correction of -0.3mm/yr (common global GIA correction, see Spada, 2017). The time series are adjusted for seasonal annual and semi-annual signals and low-pass filtered at 6 months. Then, the trends/accelerations are estimated on the time series using ordinary least square fit. The trend uncertainty of 0.3 mm/yr is provided at 90% confidence level using altimeter error budget (Quet et al 2024 [in prep.]). This estimate only considers errors related to the altimeter observation system (i.e., orbit determination errors, geophysical correction errors and inter-mission bias correction errors). The presence of the interannual signal can strongly influence the trend estimation depending on the period considered (Wang et al., 2021; Cazenave et al., 2014). The uncertainty linked to this effect is not considered. '''CONTEXT''' Change in mean sea level is an essential indicator of our evolving climate, as it reflects both the thermal expansion of the ocean in response to its warming and the increase in ocean mass due to the melting of ice sheets and glaciers(WCRP Global Sea Level Budget Group, 2018). According to the recent IPCC 6th assessment report (IPCC WGI, 2021), global mean sea level (GMSL) increased by 0.20 [0.15 to 0.25] m over the period 1901 to 2018 with a rate of rise that has accelerated since the 1960s to 3.7 [3.2 to 4.2] mm/yr for the period 2006–2018. Human activity was very likely the main driver of observed GMSL rise since 1970 (IPCC WGII, 2021). The weight of the different contributions evolves with time and in the recent decades the mass change has increased, contributing to the on-going acceleration of the GMSL trend (IPCC, 2022a; Legeais et al., 2020; Horwath et al., 2022). The adverse effects of floods, storms and tropical cyclones, and the resulting losses and damage, have increased as a result of rising sea levels, increasing people and infrastructure vulnerability and food security risks, particularly in low-lying areas and island states (IPCC, 2022b). Adaptation and mitigation measures such as the restoration of mangroves and coastal wetlands, reduce the risks from sea level rise (IPCC, 2022c). ""KEY FINDINGS "" Over the [1999/02/20 to 2025/10/18] period, global mean sea level rises at an average rate of 3.8  0.3 mm/year. This trend estimation is based on the altimeter measurements corrected from the global GIA correction (Spada, 2017) to consider the ongoing movement of land. The TOPEX-A is no longer included in the computation of regional mean sea level parameters (trend and acceleration) with version 2024 products due to potential drifts, and ongoing work aims to develop a new empirical correction. Calculation begins in February 1999 (the start of the TOPEX-B period). The observed global trend agrees with other recent estimates (Oppenheimer et al., 2019; IPCC WGI, 2021). About 30% of this rise can be attributed to ocean thermal expansion (WCRP Global Sea Level Budget Group, 2018; von Schuckmann et al., 2018), 60% is due to land ice melt from glaciers and from the Antarctic and Greenland ice sheets. The remaining 10% is attributed to changes in land water storage, such as soil moisture, surface water and groundwater. From year to year, the global mean sea level record shows significant variations related mainly to the El Niño Southern Oscillation (Cazenave and Cozannet, 2014). '''DOI (product):''' https://doi.org/10.48670/moi-00237

'''DEFINITION''' The OMI_EXTREME_SST_IBI_sst_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable sea surface temperature measured by in situ buoys at depths between 0 and 5 meters. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The percentiles are temporally averaged, and the spatial evolution is displayed, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Sea surface temperature (SST) is one of the essential ocean variables affected by climate change (mean SST trends, SST spatial and interannual variability, and extreme events). In Europe, several studies show warming trends in mean SST for the last years (von Schuckmann, 2016; IPCC, 2021, 2022). An exception seems to be the North Atlantic, where, in contrast, anomalous cold conditions have been observed since 2014 (Mulet et al., 2018; Dubois et al. 2018; IPCC 2021, 2022). Extremes may have a stronger direct influence in population dynamics and biodiversity. According to Alexander et al. 2018 the observed warming trend will continue during the 21st Century and this can result in exceptionally large warm extremes. Monitoring the evolution of sea surface temperature extremes is, therefore, crucial. The Iberia Biscay Ireland area is characterized by a great complexity in terms of processes that take place in it. The sea surface temperature varies depending on the latitude with higher values to the South. In this area, the clear warming trend observed in other European Seas is not so evident. The northwest part is influenced by the refreshing trend in the North Atlantic, and a mild warming trend has been observed in the last decade (Pisano et al. 2020). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The mean 99th percentiles showed in the area present a range from 16-21ºC in the Southwest of the British Isles and the English Channel, 21-22ºC in the Galician Coast, 22-24ºC in the South of Bay of Biscay and the Gulf of Cadiz to 24.5ºC in the Canary Island. The standard deviations are between 0.6ºC and 1.8ºC in the Southwest of the British Isles and the English Channel and between 0.6ºC and 1.3ºC in the south of Bay of Biscay with a narrow margin in the rest of the areas (0.5-0.8ºC). Results for this year show a general positive anomaly in all the areas reaching +0.5ºC in the Gulf of Cadiz, and +1.3ºC in the Southwest of the British Isles and the English Channel inside the std margin in these areas. Only one coastal stations in the Irish Sea present a low negative anomaly (-0.4ºC). More significant are the positve anomalies found in the other areas: +1.2ºC in the South of Bay of Biscay +1.5º in the Canary Island, 2.2ºC in the Galician Coast, all of them out of the std margin of the respective areas. '''DOI (product):''' https://doi.org/10.48670/moi-00255

'''DEFINITION''' The omi_climate_sst_ibi_trend product includes the Sea Surface Temperature (SST) trend for the Iberia-Biscay-Irish areas over the period 1982-2024, i.e. the rate of change (°C/year). This OMI is derived from the CMEMS REP ATL L4 SST product (SST_ATL_SST_L4_REP_OBSERVATIONS_010_026), see e.g. the OMI QUID, http://marine.copernicus.eu/documents/QUID/CMEMS-OMI-QUID-CLIMATE-SST-IBI_v3.pdf), which provided the SSTs used to compute the SST trend over the Iberia-Biscay-Irish areas. This reprocessed product consists of daily (nighttime) interpolated 0.05° grid resolution SST maps built from re-processed ESA SST CCI, C3S (Embury et al., 2024). Trend analysis has been performed by using the X-11 seasonal adjustment procedure (see e.g. Pezzulli et al., 2005), which has the effect of filtering the input SST time series acting as a low bandpass filter for interannual variations. Mann-Kendall test and Sens’s method (Sen 1968) were applied to assess whether there was a monotonic upward or downward trend and to estimate the slope of the trend and its 95% confidence interval. The reference for this OMI can be found in the first and second issue of the Copernicus Marine Service Ocean State Report (OSR), Section 1.1 (Roquet et al., 2016; Mulet et al., 2018). '''CONTEXT''' Sea surface temperature (SST) is a key climate variable since it deeply contributes in regulating climate and its variability (Deser et al., 2010). SST is then essential to monitor and characterise the state of the global climate system (GCOS 2010). Long-term SST variability, from interannual to (multi-)decadal timescales, provides insight into the slow variations/changes in SST, i.e. the temperature trend (e.g., Pezzulli et al., 2005). In addition, on shorter timescales, SST anomalies become an essential indicator for extreme events, as e.g. marine heatwaves (Hobday et al., 2018). '''CMEMS KEY FINDINGS''' The overall trend in the SST anomalies in this region is 0.012 ±0.001 °C/year over the period 1982-2024. '''DOI (product):''' https://doi.org/10.48670/moi-00257

EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity and contaminants. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on potential hazardous substances, despite the fact that some data might not be related to pollution (e.g. collected by deep corer). Temperature, salinity and additional parameters are included when available. It covers the Northeast Atlantic Ocean (40W). Data were harmonised and validated by the '‘IFREMER / IDM / SISMER - Scientific Information Systems for the SEA’ in France. The dataset contains water (profiles), sediment (profiles and timeseries) and biota (timeseries). The temporal coverage is 1974–2018 for water measurements, 1966–2014 for sediment measurements and 1979–2021 for biota measurements. Regional datasets concerning contaminants are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.6092/8b52e8d7-dc92-4305-9337-7634a5cae3f4). Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/. The harmonised dataset can be downloaded as as an ODV spreadsheet, which is composed of a metadata header followed by tab separated values. This spreadsheet can be imported into ODV Software for visualisation (more information can be found at: https://www.seadatanet.org/Software/ODV). In addition, the same dataset is offered also as a txt file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms into subcomponents (substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications (e.g. LibreOffice Calc).