This product displays for Cadmium, median values of the last 6 available years that have been measured per matrix and are present in EMODnet regional contaminants aggregated datasets, v2022. The median values ranges are derived from the following percentiles: 0-25%, 25-75%, 75-90%, >90%. Only "good data" are used, namely data with Quality Flag=1, 2, 6, Q (SeaDataNet Quality Flag schema). For water, only surface values are used (0-15 m), for sediment and biota data at all depths are used.

This visualization product displays the color of litter in percent per net per year from specific protocols different from research and monitoring protocols. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10). A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter. European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization. A filter is applied to represent only micro-litter sampled according to a very specific protocol such as the Volvo Ocean Race (VOR) or Oceaneye. To calculate percentages for each color, formula applied is: Color (%) = (∑number of particles of each color)*100 / (∑number of particles of all color) When the number of microlitters was not filled or zero, the percentage could not be calculated. Standard vocabularies for microliter colors are taken from Seadatanet's H04 library (https://vocab.seadatanet.org/v_bodc_vocab_v2/search.asp?lib=H04) Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.

Moving 6-year analysis of Water body dissolved inorganic nitrogen (DIN) for each season: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Every year of the time dimension corresponds to the 6-year centered average of the season. 6-years periods span from 1990-1995 until 2017-2022. Data Sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Units: umol/l. Description of DIVA analysis: The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.9, using GEBCO 30sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps grids is dx=dy=0.125 degrees (around 13.5km and 10.9km accordingly). The vertical resolution is 21 depth levels: [0.,5.,10.,20.,30.,50.,75.,100., 125.,150.,200.,250.,300.,400.,500.,600.,700.,800.,900.,1000.,1100.]. The horizontal correlation length is 200km. The vertical correlation length (in meters) was set twices the vertical resolution: [10.,10.,20.,20.,40.,50.,50.,50.,50.,100.,100.,100.,200.,200.,200.,200.,200.,200.,200.,200.,200.]. Duplicates check was performed using the following criteria for space and time: dlon=0.001deg., dlat=0.001deg., ddepth=1m, dtime=1hour, dvalue=0.1. The error variance (epsilon2) was set equal to 1 for profiles and 10 for time series to reduce the influence of close data near the coasts. An anamorphosis transformation was applied to the data (function DIVAnd.Anam.loglin) to avoid unrealistic negative values: threshold value=200. A background analysis field was used for all years (1990-2022) with correlation length equal to 600km and error variance (epsilon2) equal to 20. Quality control of the observations was applied using the interpolated field (QCMETHOD=3). Residuals (differences between the observations and the analysis (interpolated linearly to the location of the observations) were calculated. Observations with residuals outside the minimum and maximum values of the 99% quantile were discarded from the analysis. Originators of Italian data sets-List of contributors: - Brunetti Fabio (OGS) - Cardin Vanessa, Bensi Manuel doi:10.6092/36728450-4296-4e6a-967d-d5b6da55f306 - Cardin Vanessa, Bensi Manuel, Ursella Laura, Siena Giuseppe doi:10.6092/f8e6d18e-f877-4aa5-a983-a03b06ccb987 - Cataletto Bruno (OGS) - Cinzia Comici Cinzia (OGS) - Civitarese Giuseppe (OGS) - DeVittor Cinzia (OGS) - Giani Michele (OGS) - Kovacevic Vedrana (OGS) - Mosetti Renzo (OGS) - Solidoro C.,Beran A.,Cataletto B.,Celussi M.,Cibic T.,Comici C.,Del Negro P.,De Vittor C.,Minocci M.,Monti M.,Fabbro C.,Falconi C.,Franzo A.,Libralato S.,Lipizer M.,Negussanti J.S.,Russel H.,Valli G., doi:10.6092/e5518899-b914-43b0-8139-023718aa63f5 - Celio Massimo (ARPA FVG) - Malaguti Antonella (ENEA) - Fonda Umani Serena (UNITS) - Bignami Francesco (ISAC/CNR) - Boldrini Alfredo (ISMAR/CNR) - Marini Mauro (ISMAR/CNR) - Miserocchi Stefano (ISMAR/CNR) - Zaccone Renata (IAMC/CNR) - Lavezza, R., Dubroca, L. F. C., Ludicone, D., Kress, N., Herut, B., Civitarese, G., Cruzado, A., Lefèvre, D.,Souvermezoglou, E., Yilmaz, A., Tugrul, S., and Ribera d'Alcala, M.: Compilation of quality controlled nutrient profiles from the Mediterranean Sea, doi:10.1594/PANGAEA.771907, 2011.

'''DEFINITION''' The OMI_EXTREME_WAVE_IBI_swh_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable significant wave height (swh) measured by in situ buoys. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The percentiles are temporally averaged, and the spatial evolution is displayed, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Projections on Climate Change foresee a future with a greater frequency of extreme sea states (Stott, 2016; Mitchell, 2006). The damages caused by severe wave storms can be considerable not only in infrastructure and buildings but also in the natural habitat, crops and ecosystems affected by erosion and flooding aggravated by the extreme wave heights. In addition, wave storms strongly hamper the maritime activities, especially in harbours. These extreme phenomena drive complex hydrodynamic processes, whose understanding is paramount for proper infrastructure management, design and maintenance (Goda, 2010). In recent years, there have been several studies searching possible trends in wave conditions focusing on both mean and extreme values of significant wave height using a multi-source approach with model reanalysis information with high variability in the time coverage, satellite altimeter records covering the last 30 years and in situ buoy measured data since the 1980s decade but with sparse information and gaps in the time series (e.g. Dodet et al., 2020; Timmermans et al., 2020; Young & Ribal, 2019). These studies highlight a remarkable interannual, seasonal and spatial variability of wave conditions and suggest that the possible observed trends are not clearly associated with anthropogenic forcing (Hochet et al. 2021, 2023). In the North Atlantic, the mean wave height shows some weak trends not very statistically significant. Young & Ribal (2019) found a mostly positive weak trend in the European Coasts while Timmermans et al. (2020) showed a weak negative trend in high latitudes, including the North Sea and even more intense in the Norwegian Sea. For extreme values, some authors have found a clearer positive trend in high percentiles (90th-99th) (Young, 2011; Young & Ribal, 2019). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The mean 99th percentiles showed in the area present a wide range from 2-3.5m in the Canary Island with 0.1-0.3 m of standard deviation (std), 3.5m in the Gulf of Cadiz with 0.5m of std, 3-6m in the English Channel and the Irish Sea with 0.5-0.6m of std, 4-7m in the Bay of Biscay with 0.4-0.9m of std to 8-10m in the West of the British Isles with 0.7-1.4m of std. Results for this year show slight negative anomalies in the Canary Island (-0.4/0.0m) and in the Gulf of Cadiz (-0.8m) barely out of the standard deviation range in both areas, slight positive or negative anomalies in the West of the British Isles (-0.6/+0.4m) and in the English Channel and the Irish Sea (-0.6/+0.3m) but inside the range of the standard deviation and a general positive anomaly in the Bay of Biscay reaching +1.0m but close to the limit of the standard deviation. '''DOI (product):''' https://doi.org/10.48670/moi-00250

'''DEFINITION''' The sea level ocean monitoring indicator has been presented in the Copernicus Ocean State Report #8. The ocean monitoring indicator on regional mean sea level is derived from the DUACS delayed-time (DT-2024 version, “my” (multi-year) dataset used when available) sea level anomaly maps from satellite altimetry based on a stable number of altimeters (two) in the satellite constellation. These products are distributed by the Copernicus Climate Change Service and the Copernicus Marine Service (SEALEVEL_GLO_PHY_CLIMATE_L4_MY_008_057). The time series of area averaged anomalies correspond to the area average of the maps in the Irish-Biscay-Iberian (IBI) Sea weighted by the cosine of the latitude (to consider the changing area in each grid with latitude) and by the proportion of ocean in each grid (to consider the coastal areas). The time series are corrected from regional mean GIA correction (weighted GIA mean of a 27 ensemble model following Spada et Melini, 2019). The time series are adjusted for seasonal annual and semi-annual signals and low-pass filtered at 6 months. Then, the trends/accelerations are estimated on the time series using ordinary least square fit.The trend uncertainty is provided in a 90% confidence interval. It is calculated as the weighted mean uncertainties in the region from Prandi et al., 2021. This estimate only considers errors related to the altimeter observation system (i.e., orbit determination errors, geophysical correction errors and inter-mission bias correction errors). The presence of the interannual signal can strongly influence the trend estimation considering to the altimeter period considered (Wang et al., 2021; Cazenave et al., 2014). The uncertainty linked to this effect is not considered. ""CONTEXT "" Change in mean sea level is an essential indicator of our evolving climate, as it reflects both the thermal expansion of the ocean in response to its warming and the increase in ocean mass due to the melting of ice sheets and glaciers (WCRP Global Sea Level Budget Group, 2018). At regional scale, sea level does not change homogenously. It is influenced by various other processes, with different spatial and temporal scales, such as local ocean dynamic, atmospheric forcing, Earth gravity and vertical land motion changes (IPCC WGI, 2021). The adverse effects of floods, storms and tropical cyclones, and the resulting losses and damage, have increased as a result of rising sea levels, increasing people and infrastructure vulnerability and food security risks, particularly in low-lying areas and island states (IPCC, 2022a). Adaptation and mitigation measures such as the restoration of mangroves and coastal wetlands, reduce the risks from sea level rise (IPCC, 2022b). In IBI region, the RMSL trend is modulated by decadal variations. As observed over the global ocean, the main actors of the long-term RMSL trend are associated with anthropogenic global/regional warming. Decadal variability is mainly linked to the strengthening or weakening of the Atlantic Meridional Overturning Circulation (AMOC) (e.g. Chafik et al., 2019). The latest is driven by the North Atlantic Oscillation (NAO) for decadal (20-30y) timescales (e.g. Delworth and Zeng, 2016). Along the European coast, the NAO also influences the along-slope winds dynamic which in return significantly contributes to the local sea level variability observed (Chafik et al., 2019). ""KEY FINDINGS "" Over the [1999/02/20 to 2025/10/18] period, the area-averaged sea level in the IBI area rises at a rate of 5.0 ± 0.8 mm/yr with an acceleration of 0.29 ± 0.06 mm/yr². This trend estimation is based on the altimeter measurements corrected from global GIA correction (Spada et Melini, 2019) to consider the ongoing movement of land. The TOPEX-A is no longer included in the computation of regional mean sea level parameters (trend and acceleration) with version 2024 products due to potential drifts, and ongoing work aims to develop a new empirical correction. Calculation begins in February 1999 (the start of the TOPEX-B period). '''DOI (product):''' https://doi.org/10.48670/moi-00252

This visualization product displays the fishing & aquaculture related plastic items abundance of marine macro-litter (> 2.5cm) per beach per year from non-MSFD monitoring surveys, research & cleaning operations. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale. Preliminary processing were necessary to harmonize all the data: - Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring; - Selection of surveys from non-MSFD monitoring, cleaning and research operations; - Exclusion of beaches without coordinates; - Selection of fishing and aquaculture related plastic items only. The list of selected items is attached to this metadata. This list was created using EU Marine Beach Litter Baselines and EU Threshold Value for Macro Litter on Coastlines from JRC (these two documents are attached to this metadata); - Exclusion of surveys without associated length; - Normalization of survey lengths to 100m & 1 survey / year: in some case, the survey length was not 100m, so in order to be able to compare the abundance of litter from different beaches a normalization is applied using this formula: Number of fishing & aquaculture related plastic items of the survey (normalized by 100 m) = Number of fishing & aquaculture related items of the survey x (100 / survey length) Then, this normalized number of fishing & aquaculture related plastic items is summed to obtain the total normalized number of fishing & aquaculture related plastic items for each survey. Finally, the median abundance of fishing & aquaculture related plastic items for each beach and year is calculated from these normalized abundances of fishing & aquaculture related items per survey. Percentiles 50, 75, 95 & 99 have been calculated taking into account fishing & aquaculture related plastic items from other sources data for all years. More information is available in the attached documents. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.

This visualization product displays the number of Marine Strategy Framework Directive (MSFD) monitoring surveys and the associated temporal coverage per beach. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale. Preliminary processing were necessary to harmonize all the data: - Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring; - Selection of MSFD surveys only (exclusion of other monitoring, cleaning and research operations); - Exclusion of beaches without coordinates. More information is available in the attached documents. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.

'''DEFINITION''' The OMI_EXTREME_SST_NORTHWESTSHELF_sst_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable sea surface temperature measured by in situ buoys at depths between 0 and 5 meters. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The percentiles are temporally averaged, and the spatial evolution is displayed, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Sea surface temperature (SST) is one of the essential ocean variables affected by climate change (mean SST trends, SST spatial and interannual variability, and extreme events). In Europe, several studies show warming trends in mean SST for the last years (von Schuckmann, 2016; IPCC, 2021, 2022). An exception seems to be the North Atlantic, where, in contrast, anomalous cold conditions have been observed since 2014 (Mulet et al., 2018; Dubois et al. 2018; IPCC 2021, 2022). Extremes may have a stronger direct influence in population dynamics and biodiversity. According to Alexander et al. 2018 the observed warming trend will continue during the 21st Century and this can result in exceptionally large warm extremes. Monitoring the evolution of sea surface temperature extremes is, therefore, crucial. The North-West Self area comprises part of the North Atlantic, where this refreshing trend has been observed, and the North Sea, where a warming trend has been taking place in the last three decades (e.g. Høyer and Karagali, 2016). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The mean 99th percentiles showed in the area present a range from 14-15ºC in the North of the British Isles, 16-19ºC in the West of the North Sea to 19-20ºC in the Helgoland Bight. The standard deviation ranges from 0.7-0.8ºC in the North of the British Isles, 0.6-2ºC in the West of the North Sea to 0.8-3ºC in in the Helgoland Bight. Results for this year show positive moderate anomalies (+0.3/+1.0ºC) in all the positions except in one station in the West of the Noth Sea where the anomaly is negative (-0.3ºC), all of them inside the standard deviation margin. '''DOI (product):''' https://doi.org/10.48670/moi-00274

DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron

'''Short description:''' Altimeter satellite along-track sea surface heights anomalies (SLA) computed with respect to a twenty-year [1993, 2012] mean with a 1Hz (~7km) and 5Hz (~1km) sampling. It serves in near-real time applications. This product is processed by the DUACS multimission altimeter data processing system. It processes data from all altimeter missions available (e.g. Sentinel-6A, Jason-3, Sentinel-3A, Sentinel-3B, Saral/AltiKa, Cryosat-2, HY-2B). The system exploits the most recent datasets available based on the enhanced OGDR/NRT+IGDR/STC production. All the missions are homogenized with respect to a reference mission. Part of the processing is fitted to the European Seas. (see QUID document or http://duacs.cls.fr [http://duacs.cls.fr] pages for processing details). The product gives additional variables (e.g. Mean Dynamic Topography, Dynamic Atmospheric Correction, Ocean Tides, Long Wavelength Errors) that can be used to change the physical content for specific needs (see PUM document for details) '''Associated products''' A time invariant product http://marine.copernicus.eu/services-portfolio/access-to-products/?option=com_csw&view=details&product_id=SEALEVEL_GLO_PHY_NOISE_L4_STATIC_008_033 [http://marine.copernicus.eu/services-portfolio/access-to-products/?option=com_csw&view=details&product_id=SEALEVEL_GLO_PHY_NOISE_L4_STATIC_008_033] describing the noise level of along-track measurements is available. It is associated to the sla_filtered variable. It is a gridded product. One file is provided for the global ocean and those values must be applied for Arctic and Europe products. For Mediterranean and Black seas, one value is given in the QUID document. '''DOI (product) :''' https://doi.org/10.48670/moi-00140