EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification and contaminants. The chemicals chosen EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity and contaminants. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on potential hazardous substances, despite the fact that some data might not be related to pollution (e.g. collected by deep corer). Temperature, salinity and additional parameters are included when available. It covers the Mediterranean Sea. Data were harmonised and validated by the ‘Hellenic Centre for Marine Research, Hellenic National Oceanographic Data Centre (HCMR/HNODC)’ in Greece. The dataset contains water, sediment and biota profiles and timeseries. The temporal coverage is 1974–2020 for water measurements, 1971–2020 for sediment measurements and 1979-2021 for biota measurements. Regional datasets concerning contaminants are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.6092/8b52e8d7-dc92-4305-9337-7634a5cae3f4). Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/. The harmonised dataset can be downloaded as as an ODV spreadsheet, which is composed of a metadata header followed by tab separated values. This spreadsheet can be imported into ODV Software for visualisation (more information can be found at: https://www.seadatanet.org/Software/ODV). In addition, the same dataset is offered also as a txt file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms into subcomponents (substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications (e.g. LibreOffice Calc).

'''DEFINITION''' The OMI_EXTREME_SST_NORTHWESTSHELF_sst_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable sea surface temperature measured by in situ buoys at depths between 0 and 5 meters. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The percentiles are temporally averaged, and the spatial evolution is displayed, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Sea surface temperature (SST) is one of the essential ocean variables affected by climate change (mean SST trends, SST spatial and interannual variability, and extreme events). In Europe, several studies show warming trends in mean SST for the last years (von Schuckmann, 2016; IPCC, 2021, 2022). An exception seems to be the North Atlantic, where, in contrast, anomalous cold conditions have been observed since 2014 (Mulet et al., 2018; Dubois et al. 2018; IPCC 2021, 2022). Extremes may have a stronger direct influence in population dynamics and biodiversity. According to Alexander et al. 2018 the observed warming trend will continue during the 21st Century and this can result in exceptionally large warm extremes. Monitoring the evolution of sea surface temperature extremes is, therefore, crucial. The North-West Self area comprises part of the North Atlantic, where this refreshing trend has been observed, and the North Sea, where a warming trend has been taking place in the last three decades (e.g. Høyer and Karagali, 2016). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The mean 99th percentiles showed in the area present a range from 14-15ºC in the North of the British Isles, 16-19ºC in the West of the North Sea to 19-20ºC in the Helgoland Bight. The standard deviation ranges from 0.7-0.8ºC in the North of the British Isles, 0.6-2ºC in the West of the North Sea to 0.8-3ºC in in the Helgoland Bight. Results for this year show positive moderate anomalies (+0.3/+1.0ºC) in all the positions except in one station in the West of the Noth Sea where the anomaly is negative (-0.3ºC), all of them inside the standard deviation margin. '''DOI (product):''' https://doi.org/10.48670/moi-00274

The Level-2 Ka-band Radar Interferometer (KaRIn) low rate (LR, ocean) sea surface height (SSH) data product from the Surface Water and Ocean Topography (SWOT) mission, also referenced by the short name L2_LR_SSH, provides ocean topography measurements from the low rate ocean data stream of the KaRIn instrument, spanning 60 km on either side of the nadir altimeter with a nadir gap. The L2_LR_SSH product is available continuously and globally, although different versions of the product may be produced at different latencies and/or through different reprocessing with refined input data. Note that L2_LR_SSH does not include SSH data from the SWOT nadir altimeter. The SWOT L2_LR_SSH product is organized in four files, the L2_LR_SSH ['WindWave'] is described in this metadata sheet. The 3 other file types (['Basic'], ['Expert'], ['Unsmoothed']) are described by 3 different metadata sheets that can be accessed via the links below. The ['WindWave'] file is intended for users interested in wind and wave information. The ['Basic'] file is intended for users who are interested in SSH measurements and who will use the KaRIn measurements as provided. The ['Expert'] file is intended for expert users who are interested in the details of how the KaRIn measurements were derived and who may use detailed information for their own custom processing. The ['Unsmoothed'] file, also intended for expert users, is provided on a finer 'native' grid of 250-m (with minimal smoothing applied), and has a significantly larger data volume than the other files. The ['WindWave'] L2_LR_SSH includes measured significant wave height (SWH), normalized radar cross section (NRCS or backscatter cross section or sigma0), wind speed derived from sigma0 and SWH, wind and wave model information, and quality flags on a 2 km geographically fixed grid. May 2025: v3.0 (version D) Production and distribution of the L2_LR_SSH version D products: - PID0 for forward-processed version D products: from May 6, 2025 onward, - PGD0 for reprocessed version D products: from March 30 to July 10, 2023 (phase CalVal) and from July 26, 2023 to May 19, 2025 (phase Science) is ongoing. August 2024: v2.0 (version D) L2_LR_SSH version C products declared as validated by the SWOT project. March 2024: v2.0 (version C) Production and distribution of the pre-validated L2_LR_SSH version C products: - PIC0 for forward-processed version C products: November 23, 2023 to present, - PGC0 for reprocessed version C products: from March 30 to July 10, 2023 (phase CalVal) and from July 26, 2023 to January 25, 2024 (phase Science) November 2023: v1.0 The beta pre-validated L2_LR_SSH version 1.0 product (summer 2023 reprocessing release) is available only for the 1-day CalVal orbit phase, from March 29 to July 10, 2023, and the 21-day Science orbit phase from September 7 to November 21, 2023.

This visualization product displays plastic bags density per trawl. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during fishing bottom trawl surveys. In cases where the wingspread and/or number of items were unknown, data could not be used because these fields are needed to calculate the density. Data collected before 2011 are affected by this filter. When the distance reported in the data was null, it was calculated from: - the ground speed and the haul duration using this formula: Distance (km) = Haul duration (h) * Ground speed (km/h); - the trawl coordinates if the ground speed and the haul duration were not filled in. The swept area is calculated from the wingspread (which depends on the fishing gear type) and the distance trawled: Swept area (km²) = Distance (km) * Wingspread (km) Densities have been calculated on each trawl and year using the following computation: Density of plastic bags (number of items per km²) = ∑Number of plastic bags related items / Swept area (km²) Percentiles 50, 75, 95 & 99 have been calculated taking into account data for all years. The list of selected items for this product is attached to this metadata. Information on data processing and calculation is detailed in the attached methodology document. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.

DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron

Water body chlorophyll-a - Monthly Climatology for the European Seas for the period 1960-2020 on the domain from longitude -45.0 to 70.0 degrees East and latitude 24.0 to 83.0 degrees North. Data Sources: observational data from SeaDataNet/EMODnet Chemistry Data Network. Description of DIVA analysis: The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.9, using GEBCO 30sec topography for the spatial connectivity of water masses. Horizontal correlation length and vertical correlation length vary spatially depending on the topography and domain. Depth range: 0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0, 35.0, 40.0, 45.0, 50.0, 55.0, 60.0, 65.0, 70.0, 75.0, 80.0, 85.0, 90.0, 95.0, 100.0, 125.0, 150.0, 175.0, 200.0, 225.0, 250.0, 275.0, 300.0, 325.0, 350.0, 375.0, 400.0, 425.0, 450.0, 475.0, 500.0, 550.0, 600.0, 650.0, 700.0, 750.0, 800.0, 850.0, 900.0, 950.0, 1000.0, 1050.0, 1100.0, 1150.0, 1200.0, 1250.0, 1300.0, 1350.0, 1400.0, 1450.0, 1500.0, 1550.0, 1600.0, 1650.0, 1700.0, 1750.0, 1800.0, 1850.0, 1900.0, 1950.0, 2000.0, 2100.0, 2200.0, 2300.0, 2400.0, 2500.0, 2600.0, 2700.0, 2800.0, 2900.0, 3000.0, 3100.0, 3200.0, 3300.0, 3400.0, 3500.0, 3600.0, 3700.0, 3800.0, 3900.0, 4000.0, 4100.0, 4200.0, 4300.0, 4400.0, 4500.0, 4600.0, 4700.0, 4800.0, 4900.0, 5000.0, 5100.0, 5200.0, 5300.0, 5400.0, 5500.0 m. Units: mg/m3. The horizontal resolution of the produced DIVAnd analysis is 0.25 degrees.

This visualization product displays the spatial distribution of seafloor litter density per trawl. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during fishing bottom trawl surveys. In cases where the wingspread and/or number of items were unknown, data could not be used because these fields are needed to calculate the density. Data collected before 2011 are affected by this filter. When the distance reported in the data was null, it was calculated from: - the ground speed and the haul duration using this formula: Distance (km) = Haul duration (h) * Ground speed (km/h); - the trawl coordinates if the ground speed and the haul duration were not filled in. The swept area is calculated from the wingspread (which depends on the fishing gear type) and the distance trawled: Swept area (km²) = Distance (km) * Wingspread (km) Densities have been calculated on each trawl and year using the following computation: Density (number of items per km²) = ∑Number of items / Swept area (km²) Then a grid with 30km x 30km cells is used to calculate the weighted mean of densities in each cell from the formula : Weighted mean (number of items per km²) = ∑ (Distance (km) * Density (number of items per km²)) / ∑ Distance (km) Percentiles 50, 75, 95 & 99 have been calculated taking into account data for all years. More information on data processing and calculation are detailed in the document attached. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area. This work is based on the work presented in the following scientific article: O. Gerigny, M. Brun, M.C. Fabri, C. Tomasino, M. Le Moigne, A. Jadaud, F. Galgani, Seafloor litter from the continental shelf and canyons in French Mediterranean Water: Distribution, typologies and trends, Marine Pollution Bulletin, Volume 146, 2019, Pages 653-666, ISSN 0025-326X, https://doi.org/10.1016/j.marpolbul.2019.07.030.

'''DEFINITION''' The indicator of the Kuroshio extension phase variations is based on the standardized high frequency altimeter Eddy Kinetic Energy (EKE) averaged in the area 142-149°E and 32-37°N and computed from the DUACS delayed-time (CMEMS SEALEVEL_GLO_PHY_L4_MY_008_047) and near real-time (CMEMS SEALEVEL_GLO_PHY_L4_NRT _008_046) altimeter sea level gridded products. ""CONTEXT"" The Kuroshio Extension is an eastward-flowing current in the subtropical western North Pacific after the Kuroshio separates from the coast of Japan at 35°N, 140°E. Being the extension of a wind-driven western boundary current, the Kuroshio Extension is characterized by a strong variability and is rich in large-amplitude meanders and energetic eddies (Niiler et al., 2003; Qiu, 2003, 2002). The Kuroshio Extension region has the largest sea surface height variability on sub-annual and decadal time scales in the extratropical North Pacific Ocean (Jayne et al., 2009; Qiu and Chen, 2010, 2005). Prediction and monitoring of the path of the Kuroshio are of huge importance for local economies as the position of the Kuroshio extension strongly determines the regions where phytoplankton and hence fish are located. Unstable (contracted) phase of the Kuroshio enhance the production of Chlorophyll (Lin et al., 2014). ""CMEMS KEY FINDINGS"" The different states of the Kuroshio extension phase have been presented and validated by (Bessières et al., 2013) and further reported by Drévillon et al. (2018) in the Copernicus Ocean State Report #2. Two rather different states of the Kuroshio extension are observed: an ‘elongated state’ (also called ‘strong state’) corresponding to a narrow strong steady jet, and a ‘contracted state’ (also called ‘weak state’) in which the jet is weaker and more unsteady, spreading on a wider latitudinal band. When the Kuroshio Extension jet is in a contracted (elongated) state, the upstream Kuroshio Extension path tends to become more (less) variable and regional eddy kinetic energy level tends to be higher (lower). In between these two opposite phases, the Kuroshio extension jet has many intermediate states of transition and presents either progressively weakening or strengthening trends. In 2018, the indicator reveals an elongated state followed by a weakening neutral phase since then. '''DOI (product):''' https://doi.org/10.48670/moi-00222

'''DEFINITION''' The OMI_EXTREME_SL_IBI_slev_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable sea level measured by tide gauges along the coast. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The annual percentiles referred to annual mean sea level are temporally averaged and their spatial evolution is displayed in the dataset omi_extreme_sl_ibi_slev_mean_and_anomaly_obs, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Sea level (SLEV) is one of the Essential Ocean Variables most affected by climate change. Global mean sea level rise has accelerated since the 1990’s (Abram et al., 2019, Legeais et al., 2020), due to the increase of ocean temperature and mass volume caused by land ice melting (WCRP, 2018). Basin scale oceanographic and meteorological features lead to regional variations of this trend that combined with changes in the frequency and intensity of storms could also rise extreme sea levels up to one meter by the end of the century (Vousdoukas et al., 2020, Tebaldi et al., 2021). This will significantly increase coastal vulnerability to storms, with important consequences on the extent of flooding events, coastal erosion and damage to infrastructures caused by waves (Boumis et al., 2023). The increase in extreme sea levels over recent decades is, therefore, primarily due to the rise in mean sea level. Note, however, that the methodology used to compute this OMI removes the annual 50th percentile, thereby discarding the mean sea level trend to isolate changes in storminess. The Iberian Biscay Ireland region shows positive sea level trend modulated by decadal-to-multidecadal variations driven by ocean dynamics and superposed to the long-term trend (Chafik et al., 2019). '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The completeness index criteria is fulfilled by 62 stations in 2023, five more than those available in 2022 (57), recently added to the multi-year product INSITU_GLO_PHY_SSH_DISCRETE_MY_013_053. The mean 99th percentiles reflect the great tide spatial variability around the UK and the north of France. Minimum values are observed in the Irish eastern coast (e.g.: 0.66 m above mean sea level in Arklow Harbour) and the Canary Islands (e.g.: 0.93 and 0.96 m above mean sea level in Gomera and Hierro, respectively). Maximum values are observed in the Bristol Channel (e.g.: 6.25 and 5.78 m above mean sea level in Newport and Hinkley, respectively), and in the English Channel (e.g.: 5.16 m above mean sea level in St. Helier). The annual 99th percentiles standard deviation reflects the south-north increase of storminess, ranging between 1-3 cm in the Canary Islands to 15 cm in Hinkley (Bristol Channel). Negative or close to zero anomalies of 2023 99th percentile prevail throughout the region this year, reaching < -20 cm in several stations of the UK western coast and the English Channel (e.g.: -22 cm in Newport; -21 cm in St.Helier). Significantly positive anomaly of 2023 99th percentile is only found in Arcklow Harbour, in the eastern Irish coast. '''DOI (product):''' https://doi.org/10.48670/moi-00253

This product displays for Hexachlorobenzene, positions with percentages of all available data values per group of animals that are present in EMODnet regional contaminants aggregated datasets, v2022. The product displays positions for all available years.