This product displays for Nickel, positions with percentages of all available data values per group of animals that are present in EMODnet regional contaminants aggregated datasets, v2022. The product displays positions for all available years.

'''DEFINITION''' The OMI_EXTREME_WAVE_MEDSEA_swh_mean_and_anomaly_obs indicator is based on the computation of the 99th and the 1st percentiles from in situ data (observations). It is computed for the variable significant wave height (swh) measured by in situ buoys. The use of percentiles instead of annual maximum and minimum values, makes this extremes study less affected by individual data measurement errors. The percentiles are temporally averaged, and the spatial evolution is displayed, jointly with the anomaly in the target year. This study of extreme variability was first applied to sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, sea surface temperature and significant wave height (Pérez Gómez et al 2018). '''CONTEXT''' Projections on Climate Change foresee a future with a greater frequency of extreme sea states (Stott, 2016; Mitchell, 2006). The damages caused by severe wave storms can be considerable not only in infrastructure and buildings but also in the natural habitat, crops and ecosystems affected by erosion and flooding aggravated by the extreme wave heights. In addition, wave storms strongly hamper the maritime activities, especially in harbours. These extreme phenomena drive complex hydrodynamic processes, whose understanding is paramount for proper infrastructure management, design and maintenance (Goda, 2010). In recent years, there have been several studies searching possible trends in wave conditions focusing on both mean and extreme values of significant wave height using a multi-source approach with model reanalysis information with high variability in the time coverage, satellite altimeter records covering the last 30 years and in situ buoy measured data since the 1980s decade but with sparse information and gaps in the time series (e.g. Dodet et al., 2020; Timmermans et al., 2020; Young & Ribal, 2019). These studies highlight a remarkable interannual, seasonal and spatial variability of wave conditions and suggest that the possible observed trends are not clearly associated with anthropogenic forcing (Hochet et al. 2021, 2023). For the Mediterranean Sea an interesting publication (De Leo et al., 2024) analyses recent studies in this basin showing the variability in the different results and the difficulties to reach a consensus, especially in the mean wave conditions. The only significant conclusion is the positive trend in extreme values for the western Mediterranean Sea and in particular in the Gulf of Lion and in the Tyrrhenian Sea. '''COPERNICUS MARINE SERVICE KEY FINDINGS''' The mean 99th percentiles showed in the area present a range from 1.5-3.5 in the Gibraltar Strait and Alboran Sea with 0.25-0.6 of standard deviation (std), 2-5m in the East coast of the Iberian Peninsula and Balearic Islands with 0.2-0.4m of std, 3-4m in the Aegean Sea with 0.4-0.6m of std to 2-5m in the Gulf of Lyon with 0.3-0.5m of std. Results for this year show a slight negative anomaly in the Gibraltar Strait reaching -0.95m and the Gulf of Lyon (-0.3/-0.7m) slightly over the std in the respective areas, close to zero anomaly in the Aegean Sea (-0.1m) and slight positive or negative anomalies in the East coast of the Iberian Peninsula and Balearic Islands (-0.4/+0.3m) inside the margin of the std. '''DOI (product):''' https://doi.org/10.48670/moi-00263

'''DEFINITION''' Time mean meridional Eulerian streamfunctions are computed using the velocity field estimate provided by the Copernicus Marine Mediterranean Sea reanalysis over the period from 1987 to the year preceding the current one [-1Y], operationally extended yearly. The Eulerian meridional streamfunction is evaluated by integrating meridional velocity daily data first in a vertical direction, then in a meridional direction, and finally averaging over the reanalysis period. The Mediterranean overturning indices are derived for the eastern and western Mediterranean Sea by computing the annual streamfunction in the two areas separated by the Strait of Sicily around 36.5°N, and then considering the associated maxima. In each case a geographical constraint focused the computation on the main region of interest. For the western index, we focused on deep-water formation regions, thus excluding both the effect of shallow physical processes and the Gibraltar net inflow. For the eastern index, we investigate the Levantine and Cretan areas corresponding to the strongest meridional overturning cell locations, thus only a zonal constraint is defined. Time series of annual mean values is provided for the Mediterranean Sea using the Mediterranean 1/24o eddy resolving reanalysis (Escudier et al., 2020, 2021). More details can be found in the Copernicus Marine Ocean State Report issue 4 (OSR4, von Schuckmann et al., 2020) Section 2.4 (Lyubartsev et al., 2020) and in the QUID. '''CONTEXT''' The western and eastern Mediterranean clockwise meridional overturning circulation is connected to deep-water formation processes. The Mediterranean Sea 1/24o eddy resolving reanalysis (MEDSEA_MULTIYEAR_PHY_006_004, Escudier et al., 2020, 2021) is used to show the interannual variability of the Meridional Overturning Index. Details on the product are delivered in the PUM and QUID of this OMI. The Mediterranean Meridional Overturning Index is defined here as the maxima of the clockwise cells in the eastern and western Mediterranean Sea and is associated with deep and intermediate water mass formation processes that occur in specific areas of the basin: Gulf of Lion, Southern Adriatic Sea, Cretan Sea and Rhodes Gyre (Pinardi et al., 2015). As in the global ocean, the overturning circulation of the western and eastern Mediterranean are paramount to determine the stratification of the basins (Cessi, 2019). In turn, the stratification and deep water formation mediate the exchange of oxygen and other tracers between the surface and the deep ocean (e.g., Johnson et al., 2009; Yoon et al., 2018). In this sense, the overturning indices are potential gauges of the ecosystem health of the Mediterranean Sea, and in particular they could instruct early warning indices for the Mediterranean Sea to support the Sustainable Development Goal (SDG) 13 Target 13.3. '''CMEMS KEY FINDINGS''' The western and eastern Mediterranean overturning indices (WMOI and EMOI) are synthetic indices of changes in the thermohaline properties of the Mediterranean basin related to changes in the main drivers of the basin scale circulation. The western sub-basin clockwise overturning circulation is associated with the deep-water formation area of the Gulf of Lion, while the eastern clockwise meridional overturning circulation is composed of multiple cells associated with different intermediate and deep-water sources in the Levantine, Aegean, and Adriatic Seas. On average, the EMOI shows higher values than the WMOI indicating a more vigorous overturning circulation in eastern Mediterranean. The difference is mostly related to the occurrence of the eastern Mediterranean transient (EMT) climatic event, and linked to a peak of the EMOI in 1992 (Roether et al. 1996, 2014, Gertman et al. 2006). In 1999, the difference between the two indices started to decrease because EMT water masses reached the Sicily Strait flowing into the western Mediterranean Sea (Schroeder et al., 2016). The western peak in 2006 is discussed to be linked to anomalous deep-water formation during the Western Mediterranean Transition (Smith, 2008; Schroeder et al., 2016). Thus, the WMOI and EMOI indices are a useful tool for long-term climate monitoring of overturning changes in the Mediterranean Sea. '''DOI (product):''' https://doi.org/10.48670/mds-00317

This product displays for Mercury, median values of the last 6 available years that have been measured per matrix and are present in EMODnet regional contaminants aggregated datasets, v2022. The median values ranges are derived from the following percentiles: 0-25%, 25-75%, 75-90%, >90%. Only "good data" are used, namely data with Quality Flag=1, 2, 6, Q (SeaDataNet Quality Flag schema). For water, only surface values are used (0-15 m), for sediment and biota data at all depths are used.

Moving 6-year analysis of Water body dissolved oxygen concentration in the Mediterranean Sea for each season: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Every year of the time dimension corresponds to the 6-year centered average of the season. 6-years periods span from 1971-1976 until 2017-2022. Data Sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Description of DIVA analysis: The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.9, using GEBCO 30sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps grids is dx=dy=0.125 degrees (around 13.5km and 10.9km accordingly). The vertical resolution is 27 depth levels: [0.,5.,10.,20.,30.,50.,75.,100.,125.,150.,200.,250.,300.,400.,500.,600.,700.,800.,900.,1000.,1100.,1200.,1300.,1400.,1500.,1750.,2000.]. The horizontal correlation length is 200km. The vertical correlation length (in meters) was set twices the vertical resolution: [10.,10.,20.,20.,40.,50.,50.,50.,50.,100.,100.,100.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,500.,500.,500.]. Duplicates check was performed using the following criteria for space and time: dlon=0.001deg., dlat=0.001deg., ddepth=1m, dtime=1hour, dvalue=0.1. The error variance (epsilon2) was set equal to 1 for profiles and 10 for time series to reduce the influence of close data near the coasts. An anamorphosis transformation was applied to the data (function DIVAnd.Anam.loglin) to avoid unrealistic negative values: threshold value=200. A background analysis field was used for all years (1971-2022) with correlation length equal to 600km and error variance (epsilon2) equal to 20. Quality control of the observations was applied using the interpolated field (QCMETHOD=3). Residuals (differences between the observations and the analysis (interpolated linearly to the location of the observations) were calculated. Observations with residuals outside the minimum and maximum values of the 99% quantile were discarded from the analysis. Originators of Italian data sets-List of contributors: - Brunetti Fabio (OGS) - Cardin Vanessa, Bensi Manuel doi:10.6092/36728450-4296-4e6a-967d-d5b6da55f306 - Cardin Vanessa, Bensi Manuel, Ursella Laura, Siena Giuseppe doi:10.6092/f8e6d18e-f877-4aa5-a983-a03b06ccb987 - Cataletto Bruno (OGS) - Cinzia Comici Cinzia (OGS) - Civitarese Giuseppe (OGS) - DeVittor Cinzia (OGS) - Giani Michele (OGS) - Kovacevic Vedrana (OGS) - Mosetti Renzo (OGS) - Solidoro C.,Beran A.,Cataletto B.,Celussi M.,Cibic T.,Comici C.,Del Negro P.,De Vittor C.,Minocci M.,Monti M.,Fabbro C.,Falconi C.,Franzo A.,Libralato S.,Lipizer M.,Negussanti J.S.,Russel H.,Valli G., doi:10.6092/e5518899-b914-43b0-8139-023718aa63f5 - Celio Massimo (ARPA FVG) - Malaguti Antonella (ENEA) - Fonda Umani Serena (UNITS) - Bignami Francesco (ISAC/CNR) - Boldrini Alfredo (ISMAR/CNR) - Marini Mauro (ISMAR/CNR) - Miserocchi Stefano (ISMAR/CNR) - Zaccone Renata (IAMC/CNR) - Lavezza, R., Dubroca, L. F. C., Ludicone, D., Kress, N., Herut, B., Civitarese, G., Cruzado, A., Lefèvre, D.,Souvermezoglou, E., Yilmaz, A., Tugrul, S., and Ribera d'Alcala, M.: Compilation of quality controlled nutrient profiles from the Mediterranean Sea, doi:10.1594/PANGAEA.771907, 2011.

Moving 6-year analysis and visualization of Water body dissolved oxygen concentration in the North Sea. Four seasons (December-February, March-May, June-August, September-November). Data Sources: observational data from SeaDataNet/EMODnet Chemistry Data Network. Description of DIVA analysis: Geostatistical data analysis by DIVAnd (Data-Interpolating Variational Analysis) tool, version 2.7.9. results were subjected to the minfield option in DIVAnd to avoid negative/underestimated values in the interpolated results; error threshold masks L1 (0.3) and L2 (0.5) are included as well as the unmasked field. The depth dimension allows visualizing the gridded field at various depths.

This visualization product displays the location of all the surveys present in the EMODnet marine litter database (MLDB). The different fishing gears used are represented by different colors. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during fishing bottom trawl surveys. Unlike other EMODnet seafloor litter products, all trawls surveyed since 2006 are included in this map even if the wingspread and/or the distance are unknown. Only surveys with an unknown number of items were excluded from this product. More information on data processing and calculation are detailed in the document attached. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.

EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity and contaminants. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on potential hazardous substances, despite the fact that some data might not be related to pollution (e.g. collected by deep corer). Temperature, salinity and additional parameters are included when available. It covers the Northeast Atlantic Ocean (40W). Data were harmonised and validated by the '‘IFREMER / IDM / SISMER - Scientific Information Systems for the SEA’ in France. The dataset contains water (profiles), sediment (profiles and timeseries) and biota (timeseries). The temporal coverage is 1974–2018 for water measurements, 1966–2014 for sediment measurements and 1979–2021 for biota measurements. Regional datasets concerning contaminants are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.6092/8b52e8d7-dc92-4305-9337-7634a5cae3f4). Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/. The harmonised dataset can be downloaded as as an ODV spreadsheet, which is composed of a metadata header followed by tab separated values. This spreadsheet can be imported into ODV Software for visualisation (more information can be found at: https://www.seadatanet.org/Software/ODV). In addition, the same dataset is offered also as a txt file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms into subcomponents (substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications (e.g. LibreOffice Calc).

'''DEFINITION''' The indicator of the Kuroshio extension phase variations is based on the standardized high frequency altimeter Eddy Kinetic Energy (EKE) averaged in the area 142-149°E and 32-37°N and computed from the DUACS delayed-time (CMEMS SEALEVEL_GLO_PHY_L4_MY_008_047) and near real-time (CMEMS SEALEVEL_GLO_PHY_L4_NRT _008_046) altimeter sea level gridded products. ""CONTEXT"" The Kuroshio Extension is an eastward-flowing current in the subtropical western North Pacific after the Kuroshio separates from the coast of Japan at 35°N, 140°E. Being the extension of a wind-driven western boundary current, the Kuroshio Extension is characterized by a strong variability and is rich in large-amplitude meanders and energetic eddies (Niiler et al., 2003; Qiu, 2003, 2002). The Kuroshio Extension region has the largest sea surface height variability on sub-annual and decadal time scales in the extratropical North Pacific Ocean (Jayne et al., 2009; Qiu and Chen, 2010, 2005). Prediction and monitoring of the path of the Kuroshio are of huge importance for local economies as the position of the Kuroshio extension strongly determines the regions where phytoplankton and hence fish are located. Unstable (contracted) phase of the Kuroshio enhance the production of Chlorophyll (Lin et al., 2014). ""CMEMS KEY FINDINGS"" The different states of the Kuroshio extension phase have been presented and validated by (Bessières et al., 2013) and further reported by Drévillon et al. (2018) in the Copernicus Ocean State Report #2. Two rather different states of the Kuroshio extension are observed: an ‘elongated state’ (also called ‘strong state’) corresponding to a narrow strong steady jet, and a ‘contracted state’ (also called ‘weak state’) in which the jet is weaker and more unsteady, spreading on a wider latitudinal band. When the Kuroshio Extension jet is in a contracted (elongated) state, the upstream Kuroshio Extension path tends to become more (less) variable and regional eddy kinetic energy level tends to be higher (lower). In between these two opposite phases, the Kuroshio extension jet has many intermediate states of transition and presents either progressively weakening or strengthening trends. In 2018, the indicator reveals an elongated state followed by a weakening neutral phase since then. '''DOI (product):''' https://doi.org/10.48670/moi-00222

DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron