2023
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'''Short description:''' Altimeter satellite gridded Sea Level Anomalies (SLA) computed with respect to a twenty-year [1993, 2012] mean. The SLA is estimated by Optimal Interpolation, merging the L3 along-track measurement from the different altimeter missions available. Part of the processing is fitted to the Global Ocean. (see QUID document or http://duacs.cls.fr [http://duacs.cls.fr] pages for processing details). The product gives additional variables (i.e. Absolute Dynamic Topography and geostrophic currents (absolute and anomalies)). It serves in near-real time applications. This product is processed by the DUACS multimission altimeter data processing system. '''DOI (product) :''' https://doi.org/10.48670/moi-00149
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Hydrodynamic and sediment dynamic hindcast modelling with a resolution of 2.5 km in the Bay of Biscay and Channel, produced by coupling the hydrodynamic model CROCO with the sediment dynamic module MUSTANG.
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This dataset is composed of 702,111 zooplankton individuals, zooplankton pieces, non-living particles and imaging artefacts, ranging from 300 µm to 3.39 mm Equivalent Spherical Diameter, individually imaged and measured with the ZooCAM (Colas et al., 2018). The objects were sorted in 127 taxonomic and morphological groups. The imaged objects originate from samples collected on the Bay of Biscay continental shelf, in spring, from 2016 to 2019 during the PELGAS ecosystemic surveys (Doray et al., 2018). The samples were collected with a WP2 200 µm mesh size fitted with a Hydrobios (back-run stop) mechanical flowmeter, generally from 100 m depth to the surface, or 5 m above the sea floor (if bottom depth less than 100 m) in vertical hauls, at night. The samples were imaged on board, live, after collection and subsampling, and preserved in 4% buffered formaldehyde seawater. Each imaged object is geolocated, associated to a station, a cruise, a year and other metadata that enable the reconstruction of quantitative zooplankton communities for ecological studies (i.e. Grandrémy et al., 2023a). Each object is described by 52 morphological and grey level based features (8 bits encoding, 0 = black, 255 = white), including size, automatically extracted on each individual image by the ZooCAM software. Each object was taxonomically identified using the ZooCAM software and the web based application Ecotaxa with built-in, random forest and CNN based, semi-automatic sorting tools followed by expert validation or correction (Picheral et al., 2017). Images from 2016-2017 contain ROI bounding box limits, metadata at the bottom of each image, and non-homogenised background within and around the ROI bounding box; Images from 2018 contain non-homogenised background within the ROI bounding box only; images from 2019 have a completely homogeneous and thresholded background around the object. The differences arose from successive ZooCAM software updates that do not modify the calculation of object’s features. This dataset is intended to be used for ecological studies as well as machine learning applied to plankton studies. The archive contains : - One tab separated file (PELGAS ZooCAM zooplankton dataset) containing all data and metadata associated to each imaged and identified object. Metadata and features are in columns (n =72) and objects are in rows (n = 702,111). - One comma separated file containing the name, type, definition and unit of each field (column) in the .tsv (dataset descriptor zoocam). - One comma separated file containing the taxonomic list of the dataset, with counts and nature of the content of the category, i.e. “T” for taxonomical category, and “M” for morphological category (taxonomy descriptor zoocam). - A individual_images directory containing images of each object, named according to the object id objid and sorted in subdirectories according to their taxonomic identification, across years and sampling stations. - A Map of the sampling station location over the 2016-2019 period.
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This product displays for Cadmium, positions with percentages of all available data values per group of animals that are present in EMODnet regional contaminants aggregated datasets, v2022. The product displays positions for all available years.
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This product displays for Anthracene, positions with values counts that have been measured per matrix for each year and are present in EMODnet regional contaminants aggregated datasets, v2022. The product displays positions for every available year.
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This product displays for Benzo(a)pyrene, positions with values counts that have been measured per matrix for each year and are present in EMODnet regional contaminants aggregated datasets, v2022. The product displays positions for every available year.
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This product displays for Hexachlorobenzene, positions with values counts that have been measured per matrix for each year and are present in EMODnet regional contaminants aggregated datasets, v2022. The product displays positions for every available year.
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This visualization product displays beaches locations where non-MSFD monitoring surveys, research & cleaning operations have been applied to collate data on macrolitter (> 2.5 cm). Reference lists associated with these protocols have been indicated with different colors in the map. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale. Preliminary processing were necessary to harmonize all the data: - Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring; - Selection of surveys from non-MSFD monitoring, cleaning and research operations; - Exclusion of beaches without coordinates; - Some categories & some litter types like organic litter, small fragments (paraffin and wax; items > 2.5cm) and pollutants have been removed. The list of selected items is attached to this metadata. This list was created using EU Marine Beach Litter Baselines and EU Threshold Value for Macro Litter on Coastlines from JRC (these two documents are attached to this metadata). More information is available in the attached documents. Warning: the absence of data on the map doesn't necessarily mean that they don't exist, but that no information has been entered in the Marine Litter Database for this area.
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In this study, we examined the capacity of two bi-parental progenies of the black-lip pearl oyster, Pinctada margaritifera, to increase their later-life thermal tolerance and performance, through developmental thermal priming. Embryos (3-24 hours post-fertilization) were incubated until hatching at either control (28°C; naive) or warm (32°C; primed; ecological extremes) temperatures, and raised four months under common conditions at 28°C.
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EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification and contaminants. The chemicals chosen EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity and contaminants. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on potential hazardous substances, despite the fact that some data might not be related to pollution (e.g. collected by deep corer). Temperature, salinity and additional parameters are included when available. It covers the Mediterranean Sea. Data were harmonised and validated by the ‘Hellenic Centre for Marine Research, Hellenic National Oceanographic Data Centre (HCMR/HNODC)’ in Greece. The dataset contains water, sediment and biota profiles and timeseries. The temporal coverage is 1974–2020 for water measurements, 1971–2020 for sediment measurements and 1979-2021 for biota measurements. Regional datasets concerning contaminants are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.6092/8b52e8d7-dc92-4305-9337-7634a5cae3f4). Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/. The harmonised dataset can be downloaded as as an ODV spreadsheet, which is composed of a metadata header followed by tab separated values. This spreadsheet can be imported into ODV Software for visualisation (more information can be found at: https://www.seadatanet.org/Software/ODV). In addition, the same dataset is offered also as a txt file in a long/vertical format, in which each P01 measurement is a record line. Additionally, there are a series of columns that split P01 terms into subcomponents (substance, CAS number, matrix...).This transposed format is more adapted to worksheet applications (e.g. LibreOffice Calc).
Catalogue PIGMA