Key physico-chemical parameters (salinity, temperature, turbidity and dissolved oxygen) were measured in surface water during longitudinal transects in the Loire and Gironde estuaries in summers 2017 and 2018. This objective of this work was to determine the distribution of the dissolved oxygen and to detect potential severe desoxygenation. The transects were scheduled in order to begin the measurements at high tide from a site located upstream of an area where severe deoxygenation have been already been reported. Then, the transect was realised by sailing at low speed downstream with a multiparameter probe SAMBAT, maintained at 0.5 m below the surface, that collected a measurement every 2 minutes.

Ifremer conducts numerous fisheries surveys dedicated to benthic and demersal populations (commercial / non-commercial fishes and invertebrates). For several years, in application of the ecosystem approach, all benthic invertebrate fauna collected in fishing gear has been systematically monitored: megabenthic invertebrates captured have been sorted, identified, counted and weighted. All these surveys are based on fixed or random stratified sampling strategy with varying intensity depending on the covered survey area. These data are stored, in historical access-based databases or for the most recent years in the centralised “Harmonie” database held in the Ifremer Fishery Information Systeme (SIH). The species nomenclature used was standardized using WoRMS database. Taxa caught at least once a year are listed for each monitoring area on the basis of already available data series. In order to facilitate the identification of individuals sampled on board vessels and to improve the training of onboard scientists, the present work aims to define the minimum level of identification for each of them. The analysis identifies taxa that appears recurrently on available historical series or gathers them on less precise taxonomic levels if this is not the case, which may indicate potential identification difficulties. The following procedure was used: all taxa expressed at the species level were first aggregated at genus level if they occurred less 90% of the years over the available time series. For MEDITS, EPIBENGOL and ORHAGO, the occurrence threshold was set to 70% and to only 50% for NOURMONT because the datasets were less than 10 years long. Then to be kept at that taxonomic level, a given genus had to be observed over 90% of the time (for example over at least 9 years if the dataset contains 10 years). Otherwise it was iteratively regrouped into a higher taxonomic level (family, order, class, division) following the same criteria (Foveau et al, 2017). For instance, for the NOURSEINE survey, this resulted into the aggregation of the 103 origin taxa into 35 taxonomic groups. The name of the final taxon after data processing represents the minimum level of identification defined by the analysis. However, these results are very theoretical. This is why they were sent to scientists who embark regularly in order to refine the level of taxonomic identification with field experience. The first dataset is composed of 8 tables relevant to the different vessel surveys. The first column of each table represents the permanent code of the taxon in the Ifremer taxonomic referential, the second the systematic number and the third the species abbreviated code. The other columns are the different taxonomic levels of the taxon. The minimum level of identification at sea defined by the data processing appears in blue. The level determined by feedback of scientist’s field experience, which is the one to use at sea, appears in green. The second dataset summaries the results detailed in the first table and indicates directly for each taxon identified to far, the minimum level of identification required for the benthic invertebrates by-catch of each fisheries surveys studied.

Marine microfossils (dinoflagellate cysts and planktonic foraminifera) and geochemical (XRF-Ti/Ca)-based climatic records from a core located off the Fleuve Manche (FM) paleo-mouth (MD13-3438) have revealed that sustained warm summer sea surface temperatures (SSTs) during sub-millennial climate changes within HS1 (~18–14.7 ka) may have played a key role in the FM regime related to the European Ice Sheet (EIS) melting rate. In this study, we have analyzed the MD13-3438 pollen content over the HS1 at a mean resolution of ~50 years to test whether vegetation-based air temperatures were coupled to SSTs face to this rapid climate variability. First, our results highlight two major phases of pollen sources at site MD13-3438, preventing the pollen record to be interpreted as a continuous record of the evolution of vegetation and climate occupying a single watershed across HS1. The first phase, i.e. the HS1-a interval (~18–16.8 ka), is marked by strong occurrences of boreal pollen taxa (especially Picea-Abies). Considering their spatial distribution and the coalescence of the British and Scandinavian ice sheets into the North Sea during the Last Glacial Maximum, these taxa probably originated from the North European Plain, i.e., eastern FM tributaries (east of the Rhine River), where cool-humid conditions generally prevailed. Then, the second phase, i.e. the HS1-b interval (~16.8–14.7 ka BP), is characterized by a deceleration of the EIS retreat and the drop of boreal pollen values at site MD13-3438 further signing a less influence of the upstream FM drainage system and thus a better characterization of pollen sources related with western FM tributaries. Superimposed to these two HS1 main phases, pollen fluctuations are concomitant with sub-millennial variability in the EIS deglaciation intensity. During the early HS1 (HS1-a), we discussed two short-term increases in the ratio between deciduous trees (Quercus-Corylus-Alnus) and herbaceous plants (Plantago-Amaranthaceae-Artemisia). These events were coeval with phases of increasing FM meltwater runoff and SST seasonality (i.e., dinocyst-based summer SST amplification). We associated these events with lower contribution of the upstream FM catchment as well as, possibly, atmospheric warming and regional sea-level positive oscillations. The HS1-b is composed of three main phases that appear more influenced by the downstream FM drainage system. HS1-b1 (16.8–16.3 ka BP) corresponds to the driest and coldest conditions west of the Rhine River. HS1-b2 (16.3–15.6 ka BP) is coeval with large arrivals of iceberg from the Hudson strait in the Bay of Biscay and thus likely to a major sea-level positive oscillation associated with a phase of FM valley reworking. HS1-b3 (15.6–14.7 ka BP) corresponds to persistent arid conditions that preceded the subsequent more humid conditions recorded from 14.7 ka BP at the start of the Bölling-Alleröd.

This dataset gathers data used to infer the trophic structure and functioning of fish assemblages in the Eastern English Channel, the Bay of Biscay and the Gulf of Lions : - Biomass data, resulting from accoustic monitoring for pelagic species, or bottom trawling for demersal species, after extrapolation based on stratification scheme - Individual C and N isotopic ratios, length and mass, for all individuals considered - Individual energetic density values

This set of data documents the radiocarbon dates (n=19) obtained thanks to the accelerator mass spectrometry method (AMS) at the LMC14/ARTEMIS French national facility on the cores (Multicorer, Kullenberg) retrieved from the West-Gironde mud patch (WGMP) during the JERICObent-7 cruise (10-15 July 2019; NR Côtes de la Manche, https://doi.org/10.17600/18001022). The WGMP registers very high sedimentation rates since the last 600 years (≥ 0.3 cm/yr) and is thus of great interest for palaeoceanographic investigations. At present, this depocenter marks the mid-shelf of the temperate Bay of Biscay off major French rivers from the Aquitaine basin. The fine mud deposits of the WGMP are of 3 to 4 meters thick and lie on palimpsest levels rich in gravels and shells. They cover a V-shaped structure, oriented SW-NE, which is attributed to the incision(s) of a paleovalley in the Cenozoic substrate, mainly linked to the paleo-Gironde routing changes during past glacials/interglacials, and its potential past convergences with the paleo-rivers of the Antioche perthuis (Seudre, Charente paleovalleys?) at that times. Detailed information on each sample is presented with the 14C results obtained by the Artemis AMS facility at LMC14 laboratory (Dumoulin et al. 2017- https://doi.org/10.1017/RDC.2016.116, Beck et al. 2024- https://doi.org/10.1017/RDC.2023.23). Raw ages are indicated together with calibration calculations using the last two versions of the Calib software (http://calib.org/, Calib 7 and 8) to show the dispersion of ages linked to the updating of calibration curves (Marine13, Intcal13, Marine20, Intcal 20). The calibrated ages finally retained for publications (used in the related Seanoe document - https://doi.org/10.17882/104237 - and published in Eynaud et al., 2025 for the ST3c core, https://doi.org/10.1016/j.gloplacha.2025.105039) are those obtained with the last Calib 8.1 version. Raw 14C ages were calibrated and converted to calendar ages using the IntCal20 calibration curve with a reservoir age correction of 400 years deduced from Radionuclide analyses (137Cs and 210Pb) at the top of the studied cores (see Schmidt, 2025, https://www.seanoe.org/data/00968/107979/). 

The spatial distributions of (1) surface sediment characteristics (D0.5, Sediment Surface Area (SSA), Particulate Organic Carbon (POC), Chlorophyll-a (Chl-a), Phaeophytin-a (Phaeo-a), Total and Enzymatically Hydrolyzable Amino Acids (THAA, EHAA), δ13C) and (2) sediment profile image (apparent Redox Potential Discontinuity (aRPD), numbers and depths of biological traces) characteristics were quantified based on the sampling of 32 stations located within the West Gironde Mud Patch (Bay of Biscay, NE Atlantic) in view of (1) assessing the spatial structuration of a temperate river-dominated ocean margin located in a high-energy area, (2) disentangling the impacts of hydrodynamics and bottom trawling on this structuration, and (3) comparing the West Gironde Mud Patch with the Rhône River Prodelta (located in a low-energy area). Results support the subdivision of the West Gironde Mud Patch in a proximal and a distal part and show (1) the existence of depth gradients in surface sedimentary organics characteristics and bioturbation within the distal part; (2) no evidence for a significant effect of bottom trawling, as opposed to Bottom Shear Stress, on the West Gironde Mud Patch spatial structuration; and (3) major discrepancies between spatial structuration in the West Gironde Mud Patch and the Rhône River Prodelta, which were attributed to differences in tidal regimes, sedimentation processes, and local hydrodynamics, which is in agreement with current river-dominated ocean margin typologies.

The ARCHYD dataset, which have been collected since 1988, represents the longest long-term hydrologic data sets in Arcachon Bay. The objectives of this monitoring programme are to assess the influence of oceanic and continental inputs on the water quality of the bay and their implications on biological processes. It also aims to estimate the effectiveness of management policies in the bay by providing information on trends and/or shifts in pressure, state, and impact variables. Sampling is carried on stations spread across the entire bay, but since 1988, the number and location of stations have changed slightly to better take into account the gradient of ocean and continental inputs. In 2005, the ARCHYD network was reduced to 8 stations that are still sampled by Ifremer to date. All the stations are sampled at a weekly frequency, at midday, alternately around the low spring tide and the high neap tide. Data are complementary to REPHY dataset. Physico-chemical measures include temperature, salinity, turbidity, suspended matters (organic, mineral), dissolved oxygen and dissolved inorganic nutrients (ammonium, nitrite+nitrate, phosphate, silicate). Biological measures include pigment proxies of phytoplankton biomass and state (chlorophyll a and phaeopigment).

The data file present detailed individual congener/compound concentrations  for a large variety of hydrophobic organic contaminants including polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs), legacy and alternative brominated flame retardants (BFRs) and per- and polyfluoroalkyl substances (PFASs) in meso- and bathypelagic organisms collected in the Bay of Biscay, northeast Atlantic, in October 2017. The studied species include 3 crustacean species (Pasiphaea sivado, Sergia robusta, Ephyrina figueirai) and 11 fish species (Xenodermichthys copei, Searsia koefoedi, Myctophum punctatum, Notoscopelus kroeyeri, Lampanyctus crocodilus, Argyropelecus olfersii, Arctozenus risso, Stomias boa, Serrivomer beanii, Chauliodus sloani, Aphanopus carbo). The organisms were collected at night during one single trawling using a 25 m vertical opening pelagic trawl in the deep scattering layer (ca 800 m depth in the water column; 1330 m bottom floor). This dataset was used in the article entitled "A large diversity of organohalogen contaminants reach the meso- and bathypelagic organisms in the Bay of Biscay (northeast Atlantic)" published in Marine Pollution Bulletin.

Sardine physiological measurments from september to november 2020

The West Gironde Mud Patch (WGMP) is a 420-km2 mud belt in the Bay of Biscay, located 25 km off the mouth of the Gironde estuary. This clay-silt feature of 4 m in thickness extends between 30 and 75m water depth, surrounded by the sands and gravels that cover the North Aquitaine continental shelf. Interface cores were collected during JERICOBent-1 cruise (October 2016; Deflandre (2016) doi.org/10.17600/16010400) along two cross-shelf transects for a total of 9 sites. Each sediment core was carefully extruded every 0.5 cm from the top core to 4 cm and every 1 cm below until the core bottom. The sediment layers were used to determine dry bulk density, grain size and selected radioisotope activities (210Pb, 226Ra, 137Cs, 228Th, K).