Coastal micro-eukaryote community metatranscriptomic reads
This dataset consists of metatranscriptomic sequencing reads corresponding to coastal micro-eukaryote communities sampled in Western Europe in 2018 and 2019.
Simple
- Date (Creation)
- 2022-05-02
- Date (Publication)
- 2022-05-23
- Identifier
- FR-330-715-368-00032-IFR_BIOINFO_COSATAL_MIC_EUKARYOTE_METATRANSC
- Identifier
- DOI:10.12770/44f3c5bd-1286-443d-8b82-40ac0504066d
- Credit
- Ifremer - Laboratoire d'Ecologie Pélagique (DYNECO-PELAGOS)
Author
IFREMER
-
Le Gac Mickael
02 98 22 45 48
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané
,
Brest
,
France
02 98 22 43 58
02 98 22 45 48
Author
IFREMER
-
Quere Julien
02 98 22 45 48
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané
,
Brest
,
France
02 98 22 44 68
02 98 22 45 48
- GEMET - INSPIRE themes, version 1.0
-
- Habitats and biotopes
- Thèmes Sextant
-
- /Biological Environment/Bioinformatics
- Spatial representation type
- Grid
- Metadata language
- English
- Character set
- UTF8
N
S
E
W
Vertical extent
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
Spatial representation info
No information provided.
- Number of dimensions
- 0
- Cell geometry
- Area
- Distribution format
-
-
(
)
-
(
)
- OnLine resource
- /home/ref-bioinfo/ifremer/dyneco/Phytoplankton_communities_metaT_2021 ( NETWORK:LINK )
- OnLine resource
-
Publication
(
WWW:LINK-1.0-http--publication-URL
)
Publication
- OnLine resource
- Digital Object Identifier (DOI) ( WWW:LINK-1.0-http--metadata-URL )
- Hierarchy level
- Dataset
- Statement
- Several liters of water were filtered on polycarbonate filters (10-20µm), nitrogen frozen with RNA later solution and strored at -80C. Total RNA was extracted using NucleoSpin® RNA Plus kit (Macherey-Nagel), library prepared using Illumina mRNA TruSeq stranded kit starting and sequenced in 2 x 150 bp on Illumina Hiseq3000 at the GeT-PlaGe France Genomics sequencing platform (Toulouse, France).
- File identifier
- 44f3c5bd-1286-443d-8b82-40ac0504066d XML
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2023-07-06T12:22:38.128Z
- Metadata standard name
- ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
- 1.0
Point of contact
IFREMER
-
Le Gac Mickael
02 98 22 45 48
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané
,
Brest
,
France
02 98 22 43 58
02 98 22 45 48
Overviews
Spatial extent
N
S
E
W
Provided by
Associated resources
Not available