Fish NGS sequences associated to cetaceans from eDNA samples

In order to better characterize the fish biodiversity associated to the presence of cetaceans, especially the common Dolphin, from the Bay of Biscay, sequences from a 16S fragment were obtained from water samples acquired close to groups of dolphins.

Simple

Date (Creation)
2023-11-13
Date (Publication)
2024-01-29
Identifier
FR-330-715-368-00032-IFR_BIOINFO_delmoges_20231123_MARBEC_SL

Identifier

No information provided.
Credit
IFREMER (MARBEC/LEGPM)
Publisher
  IFREMER -
Author
  IFREMER - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
Type de jeux de donnée ODATIS
  • /Sequences
ODATIS aggregation parameters and Essential Variable names
  • Bioinformatics
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
License
Use constraints
License
Spatial representation type
Grid
Metadata language
English
Character set
UTF8
Topic category
  • Oceans
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E
W
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Begin date
2022-06-01
End date
2022-06-30
Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6

Spatial representation info

No information provided.
Distribution format
  • ( )

OnLine resource
/home/ref-bioinfo-extranet/ifremer/marbec/delmoges-fish-2022 ( NETWORK:LINK )
Hierarchy level
Dataset
Statement
A total of 21 Waterra capsules were used to samples about 80l of water close to groups of dolphins in the Bay of Biscay in June 2022. DNA was extracted and libraries were construted for a 16S mitochondrial fragment. After purification, 8 replicates of each sample were submitted to NGS sequencing.
File identifier
7c2b753e-ba6d-46a9-ba8d-56e5a075970d XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2024-01-29T12:54:13.594Z
Metadata standard name
ISO 19115:2003/19139 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5 , Montpellier , France
 
 

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N
S
E
W
thumbnail


Keywords

GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
ODATIS aggregation parameters and Essential Variable names
Bioinformatics
Thèmes Sextant
/Biological Environment/Bioinformatics
Type de jeux de donnée ODATIS
/Sequences

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