16S sequencing of a synthetic bacterial community associated with microalgae (Alexandrium minutum and Prymnesium parvum)

This study aims to characterize the assemblage of a synthetic bacterial community when exposed to the exudates of Alexandrium minutum and Prymnesium parvum in presence and absence of microalgal cells. Both free-living and host-cell-attached bacterial communities were analyzed.

Simple

Date (Creation)
2023-01-20
Date (Publication)
2023-05-15
Identifier
FR-330-715-368-00032-IFR_BIOINFO_IMOTEP_20230120_GENALG_EB

Identifier

No information provided.
Credit
Ifremer
Publisher
  IFREMER -
Author
  IFREMER - Briand Enora
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 40 34
Author
  IFREMER - Garnier Matthieu
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 42 30
Author
  IFREMER - Lassudrie Duchesne Malwenn
Station Ifremer de Concarneau - Place de la Croix - BP 40537 - 29185 Concarneau Cedex , Concarneau , France
02 98 10 42 96
Author
  IFREMER - Noel Cyril
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané , Brest , France
02 98 22 43 34
Author
  IFREMER - Jauzein Cecile
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané , Brest , France
02 98 22 49 45
Author
  IFREMER - Labry Claire
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané , Brest , France
02 98 22 49 14
02 98 22 45 48
Author
  IFREMER - Lacour Thomas
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 41 33
Author
  IFREMER - Berard Jean-Baptiste
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 43 36
Author
  IBENS - Nef Charlotte
Author
  IFREMER - Raimbault Virginie
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 42 26
02 40 37 42 41
Author
  IFREMER - Sibat Manoella
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 42 54
02 40 37 42 41
Author
  IFREMER - Schreiber Nathalie
GEMET - INSPIRE themes, version 1.0
  • Habitats and biotopes
Thèmes Sextant
  • /Biological Environment/Bioinformatics
ODATIS aggregation parameters and Essential Variable names
  • Bioinformatics
  -
Use limitation
CC-BY (Creative Commons - Attribution)
Access constraints
License
Use constraints
License
Spatial representation type
Grid
Metadata language
English
Character set
UTF8
Reference system identifier
EPSG / WGS 84 (EPSG:4326) / 8.6

Spatial representation info

No information provided.

Spatial representation info

No information provided.
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  • ( )

OnLine resource
/home/ref-bioinfo-public/ifremer/phytox/imotep ( NETWORK:LINK )
OnLine resource
Digital Object Identifier (DOI) ( WWW:LINK-1.0-http--metadata-URL )
Hierarchy level
Dataset
Statement
16S rDNA gene (V3-V4 region) were sequenced within one run using the 2x250 paired-end method on an Illumina MiSeq instrument with a MiSeq Reagent Kit V3 chemistry (Illumina).
File identifier
f5cc068f-1080-41bf-ab6c-e05430ca54d5 XML
Metadata language
English
Character set
UTF8
Hierarchy level
Dataset
Date stamp
2023-07-06T10:39:43.85Z
Metadata standard name
ISO 19115:2003/19139 - SEXTANT
Metadata standard version
1.0
Point of contact
  IFREMER - Briand Enora
Centre Atlantique - Rue de l'Ile d'Yeu - BP 21105 - 44311 Nantes Cedex 03 , Nantes , France
02 40 37 40 34
 
 

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GEMET - INSPIRE themes, version 1.0
Habitats and biotopes
ODATIS aggregation parameters and Essential Variable names
Bioinformatics
Thèmes Sextant
/Biological Environment/Bioinformatics

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