The present data set concerne metabarcoding raw reads produced using 4 different PCR targeting polymerase or capside coding region of the genoyupe I and II of norovirus. Test samples of norovirus with serial dilutions in pure water and after a bio-accumulation in oysters. Sequencing was made after VirCapSeq-VERT approach.

Le partenariat entre l’ensapBx et le GIP ATGeRi a permis la réalisation d’un atlas numérique via le catalogue et le visualiseur PIGMA. Cet atlas numérique donne accès à : - une carte sur laquelle sont situés des travaux d’étudiants et enseignants de l’ensapBx, - un lien vers le portail ArchiRès dans lequel sont décrits ces travaux de l’ensapBx avec téléchargement du document (lorsqu’il a été numérisé). De nombreux documents ont été référencés par l'ensapBx dans le catalogue PIGMA. Ils portent essentiellement sur les TPFE (travail personnel de fin d'études) et les PFE (projet de fin d'études). Ce référencement est alimenté progressivement par de nouveaux travaux.

Périmètre de la CAPB

The SDC_GLO_CLIM_TS_V2 product is an improved version of SDC_GLO_CLIM_TS_V1 and contains two different monthly climatologies for temperature and salinity from the World Ocean Data 2018 (WOD-18) database. Along with the basic quality control flags from the WOD-18, an additional quality Control named Nonlinear Quality Control (NQC) is applied. The first climatology, V2_1, considers temperature and salinity profiles from Conductivity Depth Temperature (CTD), Ocean station data (OSD) and Moored buoy data (MRB) along with Profiling Floats (PFL) from 1900 to 2017. The second climatology, V2_2, utilizes only PFL data from 2003 to 2017. V2_1 considers 44 layers from surface to 6000 m while V2_2 only 34 from 0 to 2000 m. The gridded fields are computed using DIVAnd (Data Interpolating Variational Analysis) version 2.3.1. For data access, please register at http://www.marine-id.org/.

The SDC_MED_DP2 product contains 55 sliding decadal temperature fields (1955-1964, 1956-1965, 1957-1966, …, 2009-2018) at 1/8° horizontal resolution obtained in the 0-2000m layer and two derived OHC annual anomaly estimates for the 0-700m and the 0-2000m layers. Sliding decades of annual Temperature fields were obtained from an integrated Mediterranean Sea dataset covering the time period 1955-2018, which combines data extracted from SeaDataNet infrastructure at the end of July 2019 (SDC_MED_DATA_TS_V2, https://doi.org/10.12770/3f8eaace-9f9b-4b1b-a7a4-9c55270e205a) and the Coriolis Ocean Dataset for Reanalysis (CORA 5.2, accessed in July 2020, https://archimer.ifremer.fr/doc/00595/70726/). The resulting annual OHC anomaly time series span the 1960-2014 period. The analysis was performed with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.6.1.

'''DEFINITION''' The global yearly ocean CO2 sink represents the ocean uptake of CO2 from the atmosphere computed over the whole ocean. It is expressed in PgC per year. The ocean monitoring index is presented for the period 1985 to year-1. The yearly estimate of the ocean CO2 sink corresponds to the mean of a 100-member ensemble of CO2 flux estimates (Chau et al. 2022). The range of an estimate with the associated uncertainty is then defined by the empirical 68% interval computed from the ensemble. '''CONTEXT''' Since the onset of the industrial era in 1750, the atmospheric CO2 concentration has increased from about 277±3 ppm (Joos and Spahni, 2008) to 412.44±0.1 ppm in 2020 (Dlugokencky and Tans, 2020). By 2011, the ocean had absorbed approximately 28 ± 5% of all anthropogenic CO2 emissions, thus providing negative feedback to global warming and climate change (Ciais et al., 2013). The ocean CO2 sink is evaluated every year as part of the Global Carbon Budget (Friedlingstein et al. 2022). The uptake of CO2 occurs primarily in response to increasing atmospheric levels. The global flux is characterized by a significant variability on interannual to decadal time scales largely in response to natural climate variability (e.g., ENSO) (Friedlingstein et al. 2022, Chau et al. 2022). '''CMEMS KEY FINDINGS''' The rate of change of the integrated yearly surface downward flux has increased by 0.04±0.03e-1 PgC/yr2 over the period 1985 to year-1. The yearly flux time series shows a plateau in the 90s followed by an increase since 2000 with a growth rate of 0.06±0.04e-1 PgC/yr2. In 2021 (resp. 2020), the global ocean CO2 sink was 2.41±0.13 (resp. 2.50±0.12) PgC/yr. The average over the full period is 1.61±0.10 PgC/yr with an interannual variability (temporal standard deviation) of 0.46 PgC/yr. In order to compare these fluxes to Friedlingstein et al. (2022), the estimate of preindustrial outgassing of riverine carbon of 0.61 PgC/yr, which is in between the estimate by Jacobson et al. (2007) (0.45±0.18 PgC/yr) and the one by Resplandy et al. (2018) (0.78±0.41 PgC/yr) needs to be added. A full discussion regarding this OMI can be found in section 2.10 of the Ocean State Report 4 (Gehlen et al., 2020) and in Chau et al. (2022). '''DOI (product):''' https://doi.org/10.48670/moi-00223

Sediment average grain size in French Mediterranean waters was generated from sediment categories. This rough granulometry estimate may be used for habitat models at meso- and large scale.

This metadata describes the ICES data on the temporal development of the Lusitanian/Boreal species ratio in the period from 19657 to 2016. Key message: The ratio between the number of Lusitanian (warm-favouring) and Boreal (cool-favouring) species are significantly increasing in several North-East Atlantic marine areas whereas there is no significant changes in all the southern areas. Changes in ratios are most apparent in the North Sea, Irish Sea and West of Scotland. Furthermore, it seems that Lusitanian species have not spread in all northward directions, but have followed two particular routes, through the English Channel and north around Scotland Blue dots indicates L/B ratios below 1 (dominance of Boreal species) Yellow dots indicates L/B ratios >=1 and <2 (dominance of Lusitanian species) Red dots indicates L/B ratios >=2 (high dominance of Lusitanian species) The dataset is derived from the ICES data portal 'DATRAS' (the Database of Trawl Surveys). DATRAS is an online database of trawl surveys with access to standard data products. DATRAS stores data collected primarily from bottom trawl fish surveys coordinated by ICES expert groups. The survey data are covering the Baltic Sea, Skagerrak, Kattegat, North Sea, English Channel, Celtic Sea, Irish Sea, Bay of Biscay and the eastern Atlantic from the Shetlands to Gibraltar. At present, there are more than 56 years of continuous time series data in DATRAS, and survey data are continuously updated by national institutions. The dataset has been used in the EEA Indicator "Changes in fish distribution in European seas" https://www.eea.europa.eu/data-and-maps/indicators/fish-distribution-shifts/assessment-1. The dataset has been used for this static map: https://www.eea.europa.eu/en/analysis/indicators/changes-in-fish-distribution-in/temporal-development-of-the-ratio

The SDC_NAT_CLIM_TS_V2 product contains Temperature and Salinity Climatologies for the North Atlantic Ocean including the seasonal and monthly fields for 7 decades starting from 1950 to 2019. One resolution has been processed : 1/2°. The climatic fields were computed from the integrated North Atlantic Ocean dataset that combines data extracted from the 2 major sources: SeaDataNet infrastructure and Coriolis Ocean Dataset for Reanalysis (CORA). The computation was done with the DIVAnd software.

The SDC_GLO_CLIM_O2_AOU product contains two different monthly climatology for dissolved Oxygen and Apparent Oxygen Utilization, SDC_GLO_CLIM_O2 and SDC_GLO_CLIM_AOU respectively from the World Ocean Data (WOD) database. Only basic quality control flags from the WOD are used. The first climatology, SDC_GLO_CLIM_O2, considers Dissolved Oxygen profiles casted together with temperature and salinity from CTD, Profiling Floats (PFL) and Ocean Station Data (OSD) for time duration 2003 to 2017. The second climatology, SDC_GLO_CLIM_AOU, apparent Oxygen utilization, is computed as a difference of dissolved oxygen and saturation O2 profiles. The gridded fields are computed using DIVAnd (Data Interpolating Variational Analysis) version 2.3.1.