Metagenomic analysis of clams from Sanaga river in Cameroon to describe the virome

'''DEFINITION''' The global yearly ocean CO2 sink represents the ocean uptake of CO2 from the atmosphere computed over the whole ocean. It is expressed in PgC per year. The ocean monitoring index is presented for the period 1985 to year-1. The yearly estimate of the ocean CO2 sink corresponds to the mean of a 100-member ensemble of CO2 flux estimates (Chau et al. 2022). The range of an estimate with the associated uncertainty is then defined by the empirical 68% interval computed from the ensemble. '''CONTEXT''' Since the onset of the industrial era in 1750, the atmospheric CO2 concentration has increased from about 277±3 ppm (Joos and Spahni, 2008) to 412.44±0.1 ppm in 2020 (Dlugokencky and Tans, 2020). By 2011, the ocean had absorbed approximately 28 ± 5% of all anthropogenic CO2 emissions, thus providing negative feedback to global warming and climate change (Ciais et al., 2013). The ocean CO2 sink is evaluated every year as part of the Global Carbon Budget (Friedlingstein et al. 2022). The uptake of CO2 occurs primarily in response to increasing atmospheric levels. The global flux is characterized by a significant variability on interannual to decadal time scales largely in response to natural climate variability (e.g., ENSO) (Friedlingstein et al. 2022, Chau et al. 2022). '''CMEMS KEY FINDINGS''' The rate of change of the integrated yearly surface downward flux has increased by 0.04±0.01e-1 PgC/yr2 over the period 1985 to year-1. The yearly flux time series shows a plateau in the 90s followed by an increase since 2000 with a growth rate of 0.06±0.04e-1 PgC/yr2. In 2021 (resp. 2020), the global ocean CO2 sink was 2.41±0.13 (resp. 2.50±0.12) PgC/yr. The average over the full period is 1.61±0.10 PgC/yr with an interannual variability (temporal standard deviation) of 0.46 PgC/yr. In order to compare these fluxes to Friedlingstein et al. (2022), the estimate of preindustrial outgassing of riverine carbon of 0.61 PgC/yr, which is in between the estimate by Jacobson et al. (2007) (0.45±0.18 PgC/yr) and the one by Resplandy et al. (2018) (0.78±0.41 PgC/yr) needs to be added. A full discussion regarding this OMI can be found in section 2.10 of the Ocean State Report 4 (Gehlen et al., 2020) and in Chau et al. (2022). '''DOI (product):''' https://doi.org/10.48670/moi-00223

The SDC_MED_DP2 product contains 55 sliding decadal temperature fields (1955-1964, 1956-1965, 1957-1966, …, 2009-2018) at 1/8° horizontal resolution obtained in the 0-2000m layer and two derived OHC annual anomaly estimates for the 0-700m and the 0-2000m layers. Sliding decades of annual Temperature fields were obtained from an integrated Mediterranean Sea dataset covering the time period 1955-2018, which combines data extracted from SeaDataNet infrastructure at the end of July 2019 (SDC_MED_DATA_TS_V2, https://doi.org/10.12770/3f8eaace-9f9b-4b1b-a7a4-9c55270e205a) and the Coriolis Ocean Dataset for Reanalysis (CORA 5.2, accessed in July 2020, https://archimer.ifremer.fr/doc/00595/70726/). The resulting annual OHC anomaly time series span the 1960-2014 period. The analysis was performed with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.6.1.

'''DEFINITION''' The Iberia Biscay Ireland (IBI) Sea Surface Temperature extreme from Reanalysis ocean monitoring indicator (OMI) (OMI_CLIMATE_TEMPSAL_IBI_extreme_var_temp_mean_and_anomaly) is based on the computation of the annual 99th percentile of Sea Surface Temperature (SST) from model data. Two different Copernicus Marine products are used to compute the indicator: The IBI Reanalysis (IBI_MULTIYEAR_PHY_005_002) and the IBI Analysis product (IBI_ANALYSISFORECAST_PHY_005_001). Two parameters have been considered for this OMI: * '''Map of the 99th mean percentile''': It is obtained from the reanalysis product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged over the whole period (1993-2023). * '''Anomaly of the 99th percentile in 2024''': The 99th percentile of the year 2024 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile from the 2024 percentile. This indicator is aimed at monitoring the extremes of sea surface temperature every year and at checking their variations in space. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This study of extreme variability was first applied to the sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Alvarez Fanjul et al., 2019). More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Alvarez Fanjul et al., 2019). '''CONTEXT''' The Sea Surface Temperature (SST) is one of the essential ocean variables, hence the monitoring of this variable is of key importance, since its variations can affect the ocean circulation, marine ecosystems, and ocean-atmosphere exchange processes. As the oceans continuously interact with the atmosphere, trends of sea surface temperature can also have an effect on the global climate. While the global-averaged sea surface temperatures have increased since the beginning of the 20th century (Hartmann et al., 2013) in the North Atlantic, anomalous cold conditions have also been reported since 2014 (Mulet et al., 2018; Dubois et al., 2018). The IBI area is a complex dynamic region with a remarkable variety of ocean physical processes and scales involved. The SST field in the region is strongly dependent on latitude, with higher values towards the South (Locarnini et al. 2013). This latitudinal gradient is supported by the presence of the eastern part of the North Atlantic subtropical gyre that transports cool water from the northern latitudes towards the equator. Additionally, the IBI region is under the influence of the Sea Level Pressure dipole established between the Icelandic low and the Bermuda high. Therefore, the interannual and interdecadal variability of the surface temperature field may be influenced by the North Atlantic Oscillation pattern (Czaja and Frankignoul, 2002; Flatau et al., 2003). Upwelling processes, taking place in the coastal margins, are also relevant in the IBI region. The most referenced one is the eastern boundary coastal upwelling system off the African and western Iberian coast (Sotillo et al., 2016), although other smaller upwelling systems have also been described in the northern coast of the Iberian Peninsula (Alvarez et al., 2011), the south-western Irish coast (Edwars et al., 1996) and the European Continental Slope (Dickson, 1980). '''CMEMS KEY FINDINGS''' In the IBI region, the 99th mean percentile for 1993-2023 shows a north-south pattern driven by the climatological distribution of temperatures in the North Atlantic. In the coastal regions of Africa and the Iberian Peninsula, the mean values are influenced by the upwelling processes (Sotillo et al., 2016). These results are consistent with the ones presented in Álvarez Fanjul (2019) for the period 1993-2016. The analysis of the 99th percentile SST anomaly for the year 2024 reveals that the northeastern Atlantic region, between latitudes 36° N and 48° N, experienced thermal anomalies exceeding twice the standard deviation. Similar anomalies are also observed near the northeastern Iberian Peninsula, suggesting that inshore and coastal areas may have been affected as well. In contrast, the upwelling region west of the Iberian Peninsula shows negative anomalies in maximum SST, indicating an intensification of upwelling processes in this area. '''DOI (product):''' https://doi.org/10.48670/moi-00254

'''This product has been archived''' '''DEFINITION''' The CMEMS IBI_OMI_tempsal_extreme_var_temp_mean_and_anomaly OMI indicator is based on the computation of the annual 99th percentile of Sea Surface Temperature (SST) from model data. Two different CMEMS products are used to compute the indicator: The Iberia-Biscay-Ireland Multi Year Product (IBI_MULTIYEAR_PHY_005_002) and the Analysis product (IBI_ANALYSISFORECAST_PHY_005_001). Two parameters have been considered for this OMI: • Map of the 99th mean percentile: It is obtained from the Multi Year Product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged over the whole period (1993-2021). • Anomaly of the 99th percentile in 2022: The 99th percentile of the year 2022 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile from the 2022 percentile. This indicator is aimed at monitoring the extremes of sea surface temperature every year and at checking their variations in space. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This study of extreme variability was first applied to the sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Alvarez Fanjul et al., 2019). More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Alvarez Fanjul et al., 2019). '''CONTEXT''' The Sea Surface Temperature is one of the essential ocean variables, hence the monitoring of this variable is of key importance, since its variations can affect the ocean circulation, marine ecosystems, and ocean-atmosphere exchange processes. As the oceans continuously interact with the atmosphere, trends of sea surface temperature can also have an effect on the global climate. While the global-averaged sea surface temperatures have increased since the beginning of the 20th century (Hartmann et al., 2013) in the North Atlantic, anomalous cold conditions have also been reported since 2014 (Mulet et al., 2018; Dubois et al., 2018). The IBI area is a complex dynamic region with a remarkable variety of ocean physical processes and scales involved. The Sea Surface Temperature field in the region is strongly dependent on latitude, with higher values towards the South (Locarnini et al. 2013). This latitudinal gradient is supported by the presence of the eastern part of the North Atlantic subtropical gyre that transports cool water from the northern latitudes towards the equator. Additionally, the Iberia-Biscay-Ireland region is under the influence of the Sea Level Pressure dipole established between the Icelandic low and the Bermuda high. Therefore, the interannual and interdecadal variability of the surface temperature field may be influenced by the North Atlantic Oscillation pattern (Czaja and Frankignoul, 2002; Flatau et al., 2003). Also relevant in the region are the upwelling processes taking place in the coastal margins. The most referenced one is the eastern boundary coastal upwelling system off the African and western Iberian coast (Sotillo et al., 2016), although other smaller upwelling systems have also been described in the northern coast of the Iberian Peninsula (Alvarez et al., 2011), the south-western Irish coast (Edwars et al., 1996) and the European Continental Slope (Dickson, 1980). '''CMEMS KEY FINDINGS''' In the IBI region, the 99th mean percentile for 1993-2021 shows a north-south pattern driven by the climatological distribution of temperatures in the North Atlantic. In the coastal regions of Africa and the Iberian Peninsula, the mean values are influenced by the upwelling processes (Sotillo et al., 2016). These results are consistent with the ones presented in Álvarez Fanjul (2019) for the period 1993-2016. The analysis of the 99th percentile anomaly in the year 2023 shows that this period has been affected by a severe impact of maximum SST values. Anomalies exceeding the standard deviation affect almost the entire IBI domain, and regions impacted by thermal anomalies surpassing twice the standard deviation are also widespread below the 43ºN parallel. Extreme SST values exceeding twice the standard deviation affect not only the open ocean waters but also the easter boundary upwelling areas such as the northern half of Portugal, the Spanish Atlantic coast up to Cape Ortegal, and the African coast south of Cape Aguer. It is worth noting the impact of anomalies that exceed twice the standard deviation is widespread throughout the entire Mediterranean region included in this analysis. '''DOI (product):''' https://doi.org/10.48670/moi-00254

'''DEFINITION''' The CMEMS MEDSEA_OMI_tempsal_extreme_var_temp_mean_and_anomaly OMI indicator is based on the computation of the annual 99th percentile of Sea Surface Temperature (SST) from model data. Two different CMEMS products are used to compute the indicator: The Iberia-Biscay-Ireland Multi Year Product (MEDSEA_MULTIYEAR_PHY_006_004) and the Analysis product (MEDSEA_ANALYSISFORECAST_PHY_006_013). Two parameters have been considered for this OMI: * Map of the 99th mean percentile: It is obtained from the Multi Year Product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged over the whole period (1987-2019). * Anomaly of the 99th percentile in 2020: The 99th percentile of the year 2020 is computed from the Near Real Time product. The anomaly is obtained by subtracting the mean percentile from the 2020 percentile. This indicator is aimed at monitoring the extremes of sea surface temperature every year and at checking their variations in space. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This study of extreme variability was first applied to the sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Alvarez Fanjul et al., 2019). More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Alvarez Fanjul et al., 2019). '''CONTEXT''' The Sea Surface Temperature is one of the Essential Ocean Variables, hence the monitoring of this variable is of key importance, since its variations can affect the ocean circulation, marine ecosystems, and ocean-atmosphere exchange processes. As the oceans continuously interact with the atmosphere, trends of sea surface temperature can also have an effect on the global climate. In recent decades (from mid ‘80s) the Mediterranean Sea showed a trend of increasing temperatures (Ducrocq et al., 2016), which has been observed also by means of the CMEMS SST_MED_SST_L4_REP_OBSERVATIONS_010_021 satellite product and reported in the following CMEMS OMI: MEDSEA_OMI_TEMPSAL_sst_area_averaged_anomalies and MEDSEA_OMI_TEMPSAL_sst_trend. The Mediterranean Sea is a semi-enclosed sea characterized by an annual average surface temperature which varies horizontally from ~14°C in the Northwestern part of the basin to ~23°C in the Southeastern areas. Large-scale temperature variations in the upper layers are mainly related to the heat exchange with the atmosphere and surrounding oceanic regions. The Mediterranean Sea annual 99th percentile presents a significant interannual and multidecadal variability with a significant increase starting from the 80’s as shown in Marbà et al. (2015) which is also in good agreement with the multidecadal change of the mean SST reported in Mariotti et al. (2012). Moreover the spatial variability of the SST 99th percentile shows large differences at regional scale (Darmariaki et al., 2019; Pastor et al. 2018). '''CMEMS KEY FINDINGS''' The Mediterranean mean Sea Surface Temperature 99th percentile evaluated in the period 1987-2019 (upper panel) presents highest values (~ 28-30 °C) in the eastern Mediterranean-Levantine basin and along the Tunisian coasts especially in the area of the Gulf of Gabes, while the lowest (~ 23–25 °C) are found in the Gulf of Lyon (a deep water formation area), in the Alboran Sea (affected by incoming Atlantic waters) and the eastern part of the Aegean Sea (an upwelling region). These results are in agreement with previous findings in Darmariaki et al. (2019) and Pastor et al. (2018) and are consistent with the ones presented in CMEMS OSR3 (Alvarez Fanjul et al., 2019) for the period 1993-2016. The 2020 Sea Surface Temperature 99th percentile anomaly map (bottom panel) shows a general positive pattern up to +3°C in the North-West Mediterranean area while colder anomalies are visible in the Gulf of Lion and North Aegean Sea . This Ocean Monitoring Indicator confirms the continuous warming of the SST and in particular it shows that the year 2020 is characterized by an overall increase of the extreme Sea Surface Temperature values in almost the whole domain with respect to the reference period. This finding can be probably affected by the different dataset used to evaluate this anomaly map: the 2020 Sea Surface Temperature 99th percentile derived from the Near Real Time Analysis product compared to the mean (1987-2019) Sea Surface Temperature 99th percentile evaluated from the Reanalysis product which, among the others, is characterized by different atmospheric forcing). Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00266

'''DEFINITION''' The Strong Wave Incidence index is proposed to quantify the variability of strong wave conditions in the Iberia-Biscay-Ireland regional seas. The anomaly of exceeding a threshold of Significant Wave Height is used to characterize the wave behavior. A sensitivity test of the threshold has been performed evaluating the differences using several ones (percentiles 75, 80, 85, 90, and 95). From this indicator, it has been chosen the 90th percentile as the most representative, coinciding with the state-of-the-art. Two Copernicus Marine products are used to compute the Strong Wave Incidence index: * IBI-WAV-MYP: '''IBI_MULTIYEAR_WAV_005_006''' * IBI-WAV-NRT: '''IBI_ANALYSISFORECAST_WAV_005_005''' The Strong Wave Incidence index (SWI) is defined as the difference between the climatic frequency of exceedance (Fclim) and the observational frequency of exceedance (Fobs) of the threshold defined by the 90th percentile (ThP90) of Significant Wave Height (SWH) computed on a monthly basis from hourly data of IBI-WAV-MYP product: SWI = Fobs(SWH > ThP90) – Fclim(SWH > ThP90) Since the Strong Wave Incidence index is defined as a difference of a climatic mean and an observed value, it can be considered an anomaly. Such index represents the percentage that the stormy conditions have occurred above/below the climatic average. Thus, positive/negative values indicate the percentage of hourly data that exceed the threshold above/below the climatic average, respectively. '''CONTEXT''' Ocean waves have a high relevance over the coastal ecosystems and human activities. Extreme wave events can entail severe impacts over human infrastructures and coastal dynamics. However, the incidence of severe (90th percentile) wave events also have valuable relevance affecting the development of human activities and coastal environments. The Strong Wave Incidence index based on the Copernicus Marine regional analysis and reanalysis product provides information on the frequency of severe wave events. The IBI-MFC covers the Europe’s Atlantic coast in a region bounded by the 26ºN and 56ºN parallels, and the 19ºW and 5ºE meridians. The western European coast is located at the end of the long fetch of the subpolar North Atlantic (Mørk et al., 2010), one of the world’s greatest wave generating regions (Folley, 2017). Several studies have analyzed changes of the ocean wave variability in the North Atlantic Ocean (Bacon and Carter, 1991; Kushnir et al., 1997; WASA Group, 1998; Bauer, 2001; Wang and Swail, 2004; Dupuis et al., 2006; Wolf and Woolf, 2006; Dodet et al., 2010; Young et al., 2011; Young and Ribal, 2019). The observed variability is composed of fluctuations ranging from the weather scale to the seasonal scale, together with long-term fluctuations on interannual to decadal scales associated with large-scale climate oscillations. Since the ocean surface state is mainly driven by wind stresses, part of this variability in Iberia-Biscay-Ireland region is connected to the North Atlantic Oscillation (NAO) index (Bacon and Carter, 1991; Hurrell, 1995; Bouws et al., 1996, Bauer, 2001; Woolf et al., 2002; Tsimplis et al., 2005; Gleeson et al., 2017). However, later studies have quantified the relationships between the wave climate and other atmospheric climate modes such as the East Atlantic pattern, the Arctic Oscillation pattern, the East Atlantic Western Russian pattern and the Scandinavian pattern (Izaguirre et al., 2011, Martínez-Asensio et al., 2016). The Strong Wave Incidence index provides information on incidence of stormy events in four monitoring regions in the IBI domain. The selected monitoring regions (Figure 1.A) are aimed to provide a summarized view of the diverse climatic conditions in the IBI regional domain: Wav1 region monitors the influence of stormy conditions in the West coast of Iberian Peninsula, Wav2 region is devoted to monitor the variability of stormy conditions in the Bay of Biscay, Wav3 region is focused in the northern half of IBI domain, this region is strongly affected by the storms transported by the subpolar front, and Wav4 is focused in the influence of marine storms in the North-East African Coast, the Gulf of Cadiz and Canary Islands. More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Pascual et al., 2020). '''CMEMS KEY FINDINGS''' The trend analysis of the SWI index for the period 1980–2024 shows statistically significant trends (at the 99% confidence level) in wave incidence, with an increase of at least 0.05 percentage points per year in regions WAV1, WAV3, and WAV4. The analysis of the historical period, based on reanalysis data, highlights the major wave events recorded in each monitoring region. In region WAV1 (panel B), the maximum wave event occurred in February 2014, resulting in a 28% increase in strong wave conditions. In region WAV2 (panel C), two notable wave events were identified in November 2009 and February 2014, with increases of 16–18% in strong wave conditions. Similarly, in region WAV3 (panel D), a major event occurred in February 2014, marking one of the most intense events in the region with a 20% increase in storm wave conditions. Additionally, a comparable storm affected the region two months earlier, in December 2013. In region WAV4 (panel E), the most extreme event took place in January 1996, producing a 25% increase in strong wave conditions. Although each monitoring region is generally affected by independent wave events, the analysis reveals several historical events with above-average wave activity that propagated across multiple regions: November–December 2010 (WAV3 and WAV2), February 2014 (WAV1, WAV2, and WAV3), and February–March 2018 (WAV1 and WAV4). The analysis of the near-real-time (NRT) period (from January 2024 onward) identifies a significant event in February 2024 that impacted regions WAV1 and WAV4, resulting in increases of 20% and 15% in strong wave conditions, respectively. For region WAV4, this event represents the second most intense event recorded in the region. '''DOI (product):''' https://doi.org/10.48670/moi-00251

This data set corresponds to the global offshore wind farm boundaries with the following attributes for each project: + WindfarmId (ID of the windfarm) + Name (Name of the windfarm) + Country (Country code) + Status (Status code) + WindfarmStatus (Windfarm Status or Project Status) + StatusComments (Comments on the Windfarm Status or Project Status) + CapacityMWMin (Capacity of the windfarm - Min) + CapacityMWMax (Capacity of the windfarm - Max) + NoTurbinesMin (Number of turbines - Min) + NoTurbinesMax (Number of turbines - Max) + Comments (Comments) + TurbineMWMin (Capacity of the turbine (set-up in the windfarm) - Min) + TurbineMWMax (Capacity of the turbine (set-up in the windfarm) - Max) + OtherNames (Other name of the windfarm) + CountryName (Country where the windfarm is set) + Lat (Geographic coordinate - centre latitude) + Lon (Geographic coordinate - centre longitude) + IsEstimatedLocation (This is where we know that a project exists but we don't know its exact location.) + IsOnHold + Developers (Developer(s) of the windfarm) + Owners (Owner of the windfarm) + Operators (Operator of the windfarm) + OffshoreConstructionStarts The frequency of the database release is monthly. This data set corresponds to the release of January 2020. This data set is strictly for internal EEA use as is subjected to a commercial license. Given the limited user subscriptions available, interested users should contact the SDI Team (sdi@eea.europa.eu) to be granted access to the data set.

Level 3, four times a day, sub-skin Sea Surface Temperature derived from AVHRR on Metop satellites and VIIRS or AVHRR on NOAA and NPP satellites, over North Atlantic and European Seas and re-projected on a polar stereographic at 2 km resolution, in GHRSST compliant netCDF format. This catalogue entry presents NOAA-20 North Atlantic Regional Sea Surface Temperature. SST is retrieved from infrared channels using a multispectral algorithm and a cloud mask. Atmospheric profiles of water vapor and temperature from a numerical weather prediction model, Sea Surface Temperature from an analysis, together with a radiative transfer model, are used to correct the multispectral algorithm for regional and seasonal biases due to changing atmospheric conditions. The quality of the products is monitored regularly by daily comparison of the satellite estimates against buoy measurements. The product format is compliant with the GHRSST Data Specification (GDS) version 2.Users are advised to use data only with quality levels 3,4 and 5.

The SDC_NAT_DP1 product contains the North Atlantic Ocean monthly climatology for mixed layer depth (MLD) based on temperature climatology spanning 60 years (1955-2015). The MLD fields have spatial resolution 1/4°. The profiles of temperature combines data from 2 major sources, the SeaDataNet infrastructure and a part of data of the Coriolis Ocean Dataset for Reanalysis (CORA). The used climatology is the SeaDataCloud North Atlantic Ocean Temperature Climatology V1 (https://doi.org/10.13155/61810) done with the DIVA software, version 4.7.2. The product was developed in framework of the SeaDataCloud project. This product must be considered as feasibility study for the next phases, it is a beta-version and that further research needs to be done before its usage from users.