'''DEFINITION''' The Copernicus Marine IBI_OMI_seastate_extreme_var_swh_mean_and_anomaly OMI indicator is based on the computation of the annual 99th percentile of Significant Wave Height (SWH) from model data. Two different CMEMS products are used to compute the indicator: The Iberia-Biscay-Ireland Multi Year Product (IBI_MULTIYEAR_WAV_005_006) and the Analysis product (IBI_ANALYSISFORECAST_WAV_005_005). Two parameters have been considered for this OMI: * Map of the 99th mean percentile: It is obtained from the Multi-Year Product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged in the whole period (1980-2023). * Anomaly of the 99th percentile in 2024: The 99th percentile of the year 2024 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile to the percentile in 2024. This indicator is aimed at monitoring the extremes of annual significant wave height and evaluate the spatio-temporal variability. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This approach was first successfully applied to sea level variable (Pérez Gómez et al., 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Álvarez-Fanjul et al., 2019). Further details and in-depth scientific evaluation can be found in the CMEMS Ocean State report (Álvarez- Fanjul et al., 2019). '''CONTEXT''' The sea state and its related spatio-temporal variability affect dramatically maritime activities and the physical connectivity between offshore waters and coastal ecosystems, impacting therefore on the biodiversity of marine protected areas (González-Marco et al., 2008; Savina et al., 2003; Hewitt, 2003). Over the last decades, significant attention has been devoted to extreme wave height events since their destructive effects in both the shoreline environment and human infrastructures have prompted a wide range of adaptation strategies to deal with natural hazards in coastal areas (Hansom et al., 2015). Complementarily, there is also an emerging question about the role of anthropogenic global climate change on present and future extreme wave conditions (Young and Ribal, 2019). The Iberia-Biscay-Ireland region, which covers the North-East Atlantic Ocean from Canary Islands to Ireland, is characterized by two different sea state wave climate regions: whereas the northern half, impacted by the North Atlantic subpolar front, is of one of the world’s greatest wave generating regions (Mørk et al., 2010; Folley, 2017), the southern half, located at subtropical latitudes, is by contrast influenced by persistent trade winds and thus by constant and moderate wave regimes. The North Atlantic Oscillation (NAO), which refers to changes in the atmospheric sea level pressure difference between the Azores and Iceland, is a significant driver of wave climate variability in the Northern Hemisphere. The influence of North Atlantic Oscillation on waves along the Atlantic coast of Europe is particularly strong in and has a major impact on northern latitudes wintertime (Gleeson et al., 2017; Martínez-Asensio et al. 2016; Wolf et al., 2002; Bauer, 2001; Kushnir et al., 1997; Bouws et al., 1996; Bacon and Carter, 1991). Swings in the North Atlantic Oscillation index produce changes in the storms track and subsequently in the wind speed and direction over the Atlantic that alter the wave regime. When North Atlantic Oscillation index is in its positive phase, storms usually track northeast of Europe and enhanced westerly winds induce higher than average waves in the northernmost Atlantic Ocean. Conversely, in the negative North Atlantic Oscillation phase, the track of the storms is more zonal and south than usual, with trade winds (mid latitude westerlies) being slower and producing higher than average waves in southern latitudes (Marshall et al., 2001; Wolf et al., 2002; Wolf and Woolf, 2006). Additionally, a variety of previous studies have uniquevocally determined the relationship between the sea state variability in the IBI region and other atmospheric climate modes such as the East Atlantic pattern, the Arctic Oscillation, the East Atlantic Western Russian pattern and the Scandinavian pattern (Izaguirre et al., 2011, Martínez-Asensio et al., 2016). In this context, long‐term statistical analysis of reanalyzed model data is mandatory not only to disentangle other driving agents of wave climate but also to attempt inferring any potential trend in the number and/or intensity of extreme wave events in coastal areas with subsequent socio-economic and environmental consequences. '''CMEMS KEY FINDINGS''' The climatic mean of 99th percentile (1980-2023) reveals a north-south gradient of Significant Wave Height with the highest values in northern latitudes (above 8m) and lowest values (2-3 m) detected southeastward of Canary Islands, in the seas between Canary Islands and the African Continental Shelf. This north-south pattern is the result of the two climatic conditions prevailing in the region and previously described. The 99th percentile anomalies in 2024 show that during this period, virtually the entire IBI region was affected by positive anomalies in maximum SWH, which exceeded the standard deviation of the historical record in the waters west of the Iberian Peninsula, the Spanish coast of the Bay of Biscay, and the African coast south of Cape Ghir. Anomalies reaching twice the standard deviation of the time series were also observed in coastal regions of the English Channel. '''DOI (product):''' https://doi.org/10.48670/moi-00249

The technologies developed will expand our knowledge of the ocean’s interconnected systems and provide tangible benefits to the industries that rely on them, such as fisheries and aquaculture. The data generated will also support conservation initiatives and provide vital information to policy makers. The future impact of these valuable technologies relies on their accessibility. Therefore, TechOceanS technology pilots will be low-cost and place minimal demands on existing infrastructure, allowing them to be made available for use by all countries regardless of resources. TechOceanS will also work with the IOC-UNESCO to develop “ocean best practices” standards for training and monitoring of metrology and ocean systems.

Le partenariat entre l’ensapBx et le GIP ATGeRi a permis la réalisation d’un atlas numérique via le catalogue et le visualiseur PIGMA. Cet atlas numérique donne accès à : - une carte sur laquelle sont situés des travaux d’étudiants et enseignants de l’ensapBx, - un lien vers le portail ArchiRès dans lequel sont décrits ces travaux de l’ensapBx avec téléchargement du document (lorsqu’il a été numérisé). De nombreux documents ont été référencés par l'ensapBx dans le catalogue PIGMA. Ils portent essentiellement sur les TPFE (travail personnel de fin d'études) et les PFE (projet de fin d'études). Ce référencement est alimenté progressivement par de nouveaux travaux.

'''This product has been archived''' '''Short description''': You can find here the OMEGA3D observation-based quasi-geostrophic vertical and horizontal ocean currents developed by the Consiglio Nazionale delle RIcerche. The data are provided weekly over a regular grid at 1/4° horizontal resolution, from the surface to 1500 m depth (representative of each Wednesday). The velocities are obtained by solving a diabatic formulation of the Omega equation, starting from ARMOR3D data (MULTIOBS_GLO_PHY_REP_015_002 which corresponds to former version of MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012) and ERA-Interim surface fluxes. '''DOI (product) :''' https://doi.org/10.25423/cmcc/multiobs_glo_phy_w_rep_015_007

Level 3, four times a day, sub-skin Sea Surface Temperature derived from AVHRR on Metop satellites and VIIRS or AVHRR on NOAA and NPP satellites, over North Atlantic and European Seas and re-projected on a polar stereographic at 2 km resolution, in GHRSST compliant netCDF format. This catalogue entry presents NOAA-20 North Atlantic Regional Sea Surface Temperature. SST is retrieved from infrared channels using a multispectral algorithm and a cloud mask. Atmospheric profiles of water vapor and temperature from a numerical weather prediction model, Sea Surface Temperature from an analysis, together with a radiative transfer model, are used to correct the multispectral algorithm for regional and seasonal biases due to changing atmospheric conditions. The quality of the products is monitored regularly by daily comparison of the satellite estimates against buoy measurements. The product format is compliant with the GHRSST Data Specification (GDS) version 2.Users are advised to use data only with quality levels 3,4 and 5.

'''DEFINITION''' The Strong Wave Incidence index is proposed to quantify the variability of strong wave conditions in the Iberia-Biscay-Ireland regional seas. The anomaly of exceeding a threshold of Significant Wave Height is used to characterize the wave behavior. A sensitivity test of the threshold has been performed evaluating the differences using several ones (percentiles 75, 80, 85, 90, and 95). From this indicator, it has been chosen the 90th percentile as the most representative, coinciding with the state-of-the-art. Two Copernicus Marine products are used to compute the Strong Wave Incidence index: * IBI-WAV-MYP: '''IBI_MULTIYEAR_WAV_005_006''' * IBI-WAV-NRT: '''IBI_ANALYSISFORECAST_WAV_005_005''' The Strong Wave Incidence index (SWI) is defined as the difference between the climatic frequency of exceedance (Fclim) and the observational frequency of exceedance (Fobs) of the threshold defined by the 90th percentile (ThP90) of Significant Wave Height (SWH) computed on a monthly basis from hourly data of IBI-WAV-MYP product: SWI = Fobs(SWH > ThP90) – Fclim(SWH > ThP90) Since the Strong Wave Incidence index is defined as a difference of a climatic mean and an observed value, it can be considered an anomaly. Such index represents the percentage that the stormy conditions have occurred above/below the climatic average. Thus, positive/negative values indicate the percentage of hourly data that exceed the threshold above/below the climatic average, respectively. '''CONTEXT''' Ocean waves have a high relevance over the coastal ecosystems and human activities. Extreme wave events can entail severe impacts over human infrastructures and coastal dynamics. However, the incidence of severe (90th percentile) wave events also have valuable relevance affecting the development of human activities and coastal environments. The Strong Wave Incidence index based on the Copernicus Marine regional analysis and reanalysis product provides information on the frequency of severe wave events. The IBI-MFC covers the Europe’s Atlantic coast in a region bounded by the 26ºN and 56ºN parallels, and the 19ºW and 5ºE meridians. The western European coast is located at the end of the long fetch of the subpolar North Atlantic (Mørk et al., 2010), one of the world’s greatest wave generating regions (Folley, 2017). Several studies have analyzed changes of the ocean wave variability in the North Atlantic Ocean (Bacon and Carter, 1991; Kushnir et al., 1997; WASA Group, 1998; Bauer, 2001; Wang and Swail, 2004; Dupuis et al., 2006; Wolf and Woolf, 2006; Dodet et al., 2010; Young et al., 2011; Young and Ribal, 2019). The observed variability is composed of fluctuations ranging from the weather scale to the seasonal scale, together with long-term fluctuations on interannual to decadal scales associated with large-scale climate oscillations. Since the ocean surface state is mainly driven by wind stresses, part of this variability in Iberia-Biscay-Ireland region is connected to the North Atlantic Oscillation (NAO) index (Bacon and Carter, 1991; Hurrell, 1995; Bouws et al., 1996, Bauer, 2001; Woolf et al., 2002; Tsimplis et al., 2005; Gleeson et al., 2017). However, later studies have quantified the relationships between the wave climate and other atmospheric climate modes such as the East Atlantic pattern, the Arctic Oscillation pattern, the East Atlantic Western Russian pattern and the Scandinavian pattern (Izaguirre et al., 2011, Martínez-Asensio et al., 2016). The Strong Wave Incidence index provides information on incidence of stormy events in four monitoring regions in the IBI domain. The selected monitoring regions (Figure 1.A) are aimed to provide a summarized view of the diverse climatic conditions in the IBI regional domain: Wav1 region monitors the influence of stormy conditions in the West coast of Iberian Peninsula, Wav2 region is devoted to monitor the variability of stormy conditions in the Bay of Biscay, Wav3 region is focused in the northern half of IBI domain, this region is strongly affected by the storms transported by the subpolar front, and Wav4 is focused in the influence of marine storms in the North-East African Coast, the Gulf of Cadiz and Canary Islands. More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Pascual et al., 2020). '''CMEMS KEY FINDINGS''' The trend analysis of the SWI index for the period 1980–2024 shows statistically significant trends (at the 99% confidence level) in wave incidence, with an increase of at least 0.05 percentage points per year in regions WAV1, WAV3, and WAV4. The analysis of the historical period, based on reanalysis data, highlights the major wave events recorded in each monitoring region. In region WAV1 (panel B), the maximum wave event occurred in February 2014, resulting in a 28% increase in strong wave conditions. In region WAV2 (panel C), two notable wave events were identified in November 2009 and February 2014, with increases of 16–18% in strong wave conditions. Similarly, in region WAV3 (panel D), a major event occurred in February 2014, marking one of the most intense events in the region with a 20% increase in storm wave conditions. Additionally, a comparable storm affected the region two months earlier, in December 2013. In region WAV4 (panel E), the most extreme event took place in January 1996, producing a 25% increase in strong wave conditions. Although each monitoring region is generally affected by independent wave events, the analysis reveals several historical events with above-average wave activity that propagated across multiple regions: November–December 2010 (WAV3 and WAV2), February 2014 (WAV1, WAV2, and WAV3), and February–March 2018 (WAV1 and WAV4). The analysis of the near-real-time (NRT) period (from January 2024 onward) identifies a significant event in February 2024 that impacted regions WAV1 and WAV4, resulting in increases of 20% and 15% in strong wave conditions, respectively. For region WAV4, this event represents the second most intense event recorded in the region. '''DOI (product):''' https://doi.org/10.48670/moi-00251

scRNA-seq reads from a Pacific oyster (Crassostrea gigas) hemocyte preparation. Hemocytes were isolated from a unique immunologically naive animal (Ifremer Standardized Animal, 18 months) and single-cell drop-seq technology was applied to 3,000 individual hemocytes.

'''DEFINITION''' The global yearly ocean CO2 sink represents the ocean uptake of CO2 from the atmosphere computed over the whole ocean. It is expressed in PgC per year. The ocean monitoring index is presented for the period 1985 to year-1. The yearly estimate of the ocean CO2 sink corresponds to the mean of a 100-member ensemble of CO2 flux estimates (Chau et al. 2022). The range of an estimate with the associated uncertainty is then defined by the empirical 68% interval computed from the ensemble. '''CONTEXT''' Since the onset of the industrial era in 1750, the atmospheric CO2 concentration has increased from about 277±3 ppm (Joos and Spahni, 2008) to 412.44±0.1 ppm in 2020 (Dlugokencky and Tans, 2020). By 2011, the ocean had absorbed approximately 28 ± 5% of all anthropogenic CO2 emissions, thus providing negative feedback to global warming and climate change (Ciais et al., 2013). The ocean CO2 sink is evaluated every year as part of the Global Carbon Budget (Friedlingstein et al. 2022). The uptake of CO2 occurs primarily in response to increasing atmospheric levels. The global flux is characterized by a significant variability on interannual to decadal time scales largely in response to natural climate variability (e.g., ENSO) (Friedlingstein et al. 2022, Chau et al. 2022). '''CMEMS KEY FINDINGS''' The rate of change of the integrated yearly surface downward flux has increased by 0.04±0.01e-1 PgC/yr2 over the period 1985 to year-1. The yearly flux time series shows a plateau in the 90s followed by an increase since 2000 with a growth rate of 0.06±0.04e-1 PgC/yr2. In 2021 (resp. 2020), the global ocean CO2 sink was 2.41±0.13 (resp. 2.50±0.12) PgC/yr. The average over the full period is 1.61±0.10 PgC/yr with an interannual variability (temporal standard deviation) of 0.46 PgC/yr. In order to compare these fluxes to Friedlingstein et al. (2022), the estimate of preindustrial outgassing of riverine carbon of 0.61 PgC/yr, which is in between the estimate by Jacobson et al. (2007) (0.45±0.18 PgC/yr) and the one by Resplandy et al. (2018) (0.78±0.41 PgC/yr) needs to be added. A full discussion regarding this OMI can be found in section 2.10 of the Ocean State Report 4 (Gehlen et al., 2020) and in Chau et al. (2022). '''DOI (product):''' https://doi.org/10.48670/moi-00223

Metagenomic analysis of clams from Sanaga river in Cameroon to describe the virome

'''DEFINITION''' The Mediterranean water mass formation rates are evaluated in 4 areas as defined in the Ocean State Report issue 2 (OSR2, von Schuckmann et al., 2018) section 3.4 (Simoncelli and Pinardi, 2018): (1) the Gulf of Lions for the Western Mediterranean Deep Waters (WMDW); (2) the Southern Adriatic Sea Pit for the Eastern Mediterranean Deep Waters (EMDW); (3) the Cretan Sea for Cretan Intermediate Waters (CIW) and Cretan Deep Waters (CDW); (4) the Rhodes Gyre, the area of formation of the so-called Levantine Intermediate Waters (LIW) and Levantine Deep Waters (LDW). Annual water mass formation rates have been computed using daily mixed layer depth estimates (density criteria Δσ = 0.01 kg/m3, 10 m reference level) considering the annual maximum volume of water above mixed layer depth with potential density within or higher the specific thresholds specified in Table 1 then divided by seconds per year. Annual mean values are provided using the Mediterranean 1/24o eddy resolving reanalysis (Escudier et al. 2020, 2021). Time spans from 1987 to the year preceding the current one [-1Y], operationally extended yearly. '''CONTEXT''' The formation of intermediate and deep water masses is one of the most important processes occurring in the Mediterranean Sea, being a component of its general overturning circulation. This circulation varies at interannual and multidecadal time scales and it is composed of an upper zonal cell (Zonal Overturning Circulation) and two main meridional cells in the western and eastern Mediterranean (Pinardi and Masetti 2000). The objective is to monitor the main water mass formation events using the eddy resolving Mediterranean Sea Reanalysis (MEDSEA_MULTIYEAR_PHY_006_004, Escudier et al. 2020, 2021) and considering Pinardi et al. (2015) and Simoncelli and Pinardi (2018) as references for the methodology. The Mediterranean Sea Reanalysis can reproduce both Eastern Mediterranean Transient and Western Mediterranean Transition phenomena and catches the principal water mass formation events reported in the literature. This will permit constant monitoring of the open ocean deep convection process in the Mediterranean Sea and a better understanding of the multiple drivers of the general overturning circulation at interannual and multidecadal time scales. Deep and intermediate water formation events reveal themselves by a deep mixed layer depth distribution in four Mediterranean areas: Gulf of Lions, Southern Adriatic Sea Pit, Cretan Sea and Rhodes Gyre. '''KEY FINDINGS''' The Western Mediterranean Deep Water (WMDW) formation events in the Gulf of Lion appear to be larger after 1999 consistently with Schroeder et al. (2006, 2008) related to the Eastern Mediterranean Transient event. This modification of WMDW after 2005 has been called Western Mediterranean Transition. WMDW formation events are consistent with Somot et al. (2016) and the event in 2009 is also reported in Houpert et al. (2016). The Eastern Mediterranean Deep Water (EMDW) formation in the Southern Adriatic Pit region displays a period of water mass formation between 1988 and 1993, in agreement with Pinardi et al. (2015), in 1996, 1999 and 2000 as documented by Manca et al. (2002). Weak deep water formation in winter 2006 is confirmed by observations in Vilibić and Šantić (2008). An intense deep water formation event is detected in 2012-2013 (Gačić et al., 2014). Last years are characterized by large events starting from 2017 (Mihanovic et al., 2021). Cretan Intermediate Water formation rates present larger peaks between 1989 and 1993 with the ones in 1992 and 1993 composing the Eastern Mediterranean Transient phenomena. The Cretan Deep Water formed in 1992 and 1993 is characterized by the highest densities of the entire period in accordance with Velaoras et al. (2014). The Levantine Deep Water formation rate in the Rhode Gyre region presents the largest values between 1992 and 1993 in agreement with Kontoyiannis et al. (1999). '''DOI (product):''' https://doi.org/10.48670/mds-00318