Metagenomic analysis of clams from Sanaga river in Cameroon to describe the virome

Pôles de la CAPB correspondant aux anciens EPCI

'''DEFINITION''' The global yearly ocean CO2 sink represents the ocean uptake of CO2 from the atmosphere computed over the whole ocean. It is expressed in PgC per year. The ocean monitoring index is presented for the period 1985 to year-1. The yearly estimate of the ocean CO2 sink corresponds to the mean of a 100-member ensemble of CO2 flux estimates (Chau et al. 2022). The range of an estimate with the associated uncertainty is then defined by the empirical 68% interval computed from the ensemble. '''CONTEXT''' Since the onset of the industrial era in 1750, the atmospheric CO2 concentration has increased from about 277±3 ppm (Joos and Spahni, 2008) to 412.44±0.1 ppm in 2020 (Dlugokencky and Tans, 2020). By 2011, the ocean had absorbed approximately 28 ± 5% of all anthropogenic CO2 emissions, thus providing negative feedback to global warming and climate change (Ciais et al., 2013). The ocean CO2 sink is evaluated every year as part of the Global Carbon Budget (Friedlingstein et al. 2022). The uptake of CO2 occurs primarily in response to increasing atmospheric levels. The global flux is characterized by a significant variability on interannual to decadal time scales largely in response to natural climate variability (e.g., ENSO) (Friedlingstein et al. 2022, Chau et al. 2022). '''CMEMS KEY FINDINGS''' The rate of change of the integrated yearly surface downward flux has increased by 0.04±0.01e-1 PgC/yr2 over the period 1985 to year-1. The yearly flux time series shows a plateau in the 90s followed by an increase since 2000 with a growth rate of 0.06±0.04e-1 PgC/yr2. In 2021 (resp. 2020), the global ocean CO2 sink was 2.41±0.13 (resp. 2.50±0.12) PgC/yr. The average over the full period is 1.61±0.10 PgC/yr with an interannual variability (temporal standard deviation) of 0.46 PgC/yr. In order to compare these fluxes to Friedlingstein et al. (2022), the estimate of preindustrial outgassing of riverine carbon of 0.61 PgC/yr, which is in between the estimate by Jacobson et al. (2007) (0.45±0.18 PgC/yr) and the one by Resplandy et al. (2018) (0.78±0.41 PgC/yr) needs to be added. A full discussion regarding this OMI can be found in section 2.10 of the Ocean State Report 4 (Gehlen et al., 2020) and in Chau et al. (2022). '''DOI (product):''' https://doi.org/10.48670/moi-00223

'''This product has been archived''' '''DEFINITION''' The temporal evolution of thermosteric sea level in an ocean layer is obtained from an integration of temperature driven ocean density variations, which are subtracted from a reference climatology to obtain the fluctuations from an average field. The regional thermosteric sea level values are then averaged from 60°S-60°N aiming to monitor interannual to long term global sea level variations caused by temperature driven ocean volume changes through thermal expansion as expressed in meters (m). '''CONTEXT''' Most of the interannual variability and trends in regional sea level is caused by changes in steric sea level. At mid and low latitudes, the steric sea level signal is essentially due to temperature changes, i.e. the thermosteric effect (Stammer et al., 2013, Meyssignac et al., 2016). Salinity changes play only a local role. Regional trends of thermosteric sea level can be significantly larger compared to their globally averaged versions (Storto et al., 2018). Except for shallow shelf sea and high latitudes (> 60° latitude), regional thermosteric sea level variations are mostly related to ocean circulation changes, in particular in the tropics where the sea level variations and trends are the most intense over the last two decades. '''CMEMS KEY FINDINGS''' Significant (i.e. when the signal exceeds the noise) regional trends for the period 2005-2019 from the Copernicus Marine Service multi-ensemble approach show a thermosteric sea level rise at rates ranging from the global mean average up to more than 8 mm/year. There are specific regions where a negative trend is observed above noise at rates up to about -8 mm/year such as in the subpolar North Atlantic, or the western tropical Pacific. These areas are characterized by strong year-to-year variability (Dubois et al., 2018; Capotondi et al., 2020). Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00241

The technologies developed will expand our knowledge of the ocean’s interconnected systems and provide tangible benefits to the industries that rely on them, such as fisheries and aquaculture. The data generated will also support conservation initiatives and provide vital information to policy makers. The future impact of these valuable technologies relies on their accessibility. Therefore, TechOceanS technology pilots will be low-cost and place minimal demands on existing infrastructure, allowing them to be made available for use by all countries regardless of resources. TechOceanS will also work with the IOC-UNESCO to develop “ocean best practices” standards for training and monitoring of metrology and ocean systems.

In integrated multi-trophic aquaculture (IMTA), multiple aquatic species from different trophic levels are farmed together. Thus, waste from one species can be used as input (fertiliser and food) for another species. The EU-funded ASTRAL project will develop IMTA production chains for the Atlantic markets. Focusing on a regional challenge-based perspective, it will bring together labs in Ireland and Scotland (open offshore labs), South Africa (flow-through inshore) and Brazil (recirculation inshore) as well as Argentina (prospective IMTA lab). The aim is to increase circularity by as much as 60 % compared to monoculture baseline aquaculture and to boost revenue diversification for aquaculture producers. ASTRAL will share, integrate, and co-generate knowledge, technology and best practices fostering a collaborative ecosystem along the Atlantic.

The Ocean Colour Climate Change Initiative project aims to: Develop and validate algorithms to meet the Ocean Colour GCOS ECV requirements for consistent, stable, error-characterized global satellite data products from multi-sensor data archives. Produce and validate, within an R&D context, the most complete and consistent possible time series of multi-sensor global satellite data products for climate research and modelling. Optimize the impact of MERIS data on climate data records. Generate complete specifications for an operational production system. Strengthen inter-disciplinary cooperation between international Earth observation, climate research and modelling communities, in pursuit of scientific excellence. The ESA OC CCI project is following a data reprocessing paradigm of regular re-processings utilising on-going research and developments in atmospheric correction, in-water algorithms, data merging techniques and bias correction. This requires flexibility and rapid turn-around of processing of extensive ocean colour datasets from a number of ESA and NASA missions to both trial new algorithms and methods and undertake the complete data set production. Read more about the Ocean Colour project on ESA's project website. https://climate.esa.int/en/projects/ocean-colour/.

Level 3, four times a day, sub-skin Sea Surface Temperature derived from AVHRR on Metop satellites and VIIRS or AVHRR on NOAA and NPP satellites, over North Atlantic and European Seas and re-projected on a polar stereographic at 2 km resolution, in GHRSST compliant netCDF format. This catalogue entry presents NOAA-20 North Atlantic Regional Sea Surface Temperature. SST is retrieved from infrared channels using a multispectral algorithm and a cloud mask. Atmospheric profiles of water vapor and temperature from a numerical weather prediction model, Sea Surface Temperature from an analysis, together with a radiative transfer model, are used to correct the multispectral algorithm for regional and seasonal biases due to changing atmospheric conditions. The quality of the products is monitored regularly by daily comparison of the satellite estimates against buoy measurements. The product format is compliant with the GHRSST Data Specification (GDS) version 2.Users are advised to use data only with quality levels 3,4 and 5.

'''DEFINITION''' The Copernicus Marine IBI_OMI_seastate_extreme_var_swh_mean_and_anomaly OMI indicator is based on the computation of the annual 99th percentile of Significant Wave Height (SWH) from model data. Two different CMEMS products are used to compute the indicator: The Iberia-Biscay-Ireland Multi Year Product (IBI_MULTIYEAR_WAV_005_006) and the Analysis product (IBI_ANALYSISFORECAST_WAV_005_005). Two parameters have been considered for this OMI: * Map of the 99th mean percentile: It is obtained from the Multi-Year Product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged in the whole period (1980-2023). * Anomaly of the 99th percentile in 2024: The 99th percentile of the year 2024 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile to the percentile in 2024. This indicator is aimed at monitoring the extremes of annual significant wave height and evaluate the spatio-temporal variability. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This approach was first successfully applied to sea level variable (Pérez Gómez et al., 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Álvarez-Fanjul et al., 2019). Further details and in-depth scientific evaluation can be found in the CMEMS Ocean State report (Álvarez- Fanjul et al., 2019). '''CONTEXT''' The sea state and its related spatio-temporal variability affect dramatically maritime activities and the physical connectivity between offshore waters and coastal ecosystems, impacting therefore on the biodiversity of marine protected areas (González-Marco et al., 2008; Savina et al., 2003; Hewitt, 2003). Over the last decades, significant attention has been devoted to extreme wave height events since their destructive effects in both the shoreline environment and human infrastructures have prompted a wide range of adaptation strategies to deal with natural hazards in coastal areas (Hansom et al., 2015). Complementarily, there is also an emerging question about the role of anthropogenic global climate change on present and future extreme wave conditions (Young and Ribal, 2019). The Iberia-Biscay-Ireland region, which covers the North-East Atlantic Ocean from Canary Islands to Ireland, is characterized by two different sea state wave climate regions: whereas the northern half, impacted by the North Atlantic subpolar front, is of one of the world’s greatest wave generating regions (Mørk et al., 2010; Folley, 2017), the southern half, located at subtropical latitudes, is by contrast influenced by persistent trade winds and thus by constant and moderate wave regimes. The North Atlantic Oscillation (NAO), which refers to changes in the atmospheric sea level pressure difference between the Azores and Iceland, is a significant driver of wave climate variability in the Northern Hemisphere. The influence of North Atlantic Oscillation on waves along the Atlantic coast of Europe is particularly strong in and has a major impact on northern latitudes wintertime (Gleeson et al., 2017; Martínez-Asensio et al. 2016; Wolf et al., 2002; Bauer, 2001; Kushnir et al., 1997; Bouws et al., 1996; Bacon and Carter, 1991). Swings in the North Atlantic Oscillation index produce changes in the storms track and subsequently in the wind speed and direction over the Atlantic that alter the wave regime. When North Atlantic Oscillation index is in its positive phase, storms usually track northeast of Europe and enhanced westerly winds induce higher than average waves in the northernmost Atlantic Ocean. Conversely, in the negative North Atlantic Oscillation phase, the track of the storms is more zonal and south than usual, with trade winds (mid latitude westerlies) being slower and producing higher than average waves in southern latitudes (Marshall et al., 2001; Wolf et al., 2002; Wolf and Woolf, 2006). Additionally, a variety of previous studies have uniquevocally determined the relationship between the sea state variability in the IBI region and other atmospheric climate modes such as the East Atlantic pattern, the Arctic Oscillation, the East Atlantic Western Russian pattern and the Scandinavian pattern (Izaguirre et al., 2011, Martínez-Asensio et al., 2016). In this context, long‐term statistical analysis of reanalyzed model data is mandatory not only to disentangle other driving agents of wave climate but also to attempt inferring any potential trend in the number and/or intensity of extreme wave events in coastal areas with subsequent socio-economic and environmental consequences. '''CMEMS KEY FINDINGS''' The climatic mean of 99th percentile (1980-2023) reveals a north-south gradient of Significant Wave Height with the highest values in northern latitudes (above 8m) and lowest values (2-3 m) detected southeastward of Canary Islands, in the seas between Canary Islands and the African Continental Shelf. This north-south pattern is the result of the two climatic conditions prevailing in the region and previously described. The 99th percentile anomalies in 2024 show that during this period, virtually the entire IBI region was affected by positive anomalies in maximum SWH, which exceeded the standard deviation of the historical record in the waters west of the Iberian Peninsula, the Spanish coast of the Bay of Biscay, and the African coast south of Cape Ghir. Anomalies reaching twice the standard deviation of the time series were also observed in coastal regions of the English Channel. '''DOI (product):''' https://doi.org/10.48670/moi-00249

'''DEFINITION''' The Iberia Biscay Ireland (IBI) Sea Surface Temperature extreme from Reanalysis ocean monitoring indicator (OMI) (OMI_CLIMATE_TEMPSAL_IBI_extreme_var_temp_mean_and_anomaly) is based on the computation of the annual 99th percentile of Sea Surface Temperature (SST) from model data. Two different Copernicus Marine products are used to compute the indicator: The IBI Reanalysis (IBI_MULTIYEAR_PHY_005_002) and the IBI Analysis product (IBI_ANALYSISFORECAST_PHY_005_001). Two parameters have been considered for this OMI: * '''Map of the 99th mean percentile''': It is obtained from the reanalysis product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged over the whole period (1993-2023). * '''Anomaly of the 99th percentile in 2024''': The 99th percentile of the year 2024 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile from the 2024 percentile. This indicator is aimed at monitoring the extremes of sea surface temperature every year and at checking their variations in space. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This study of extreme variability was first applied to the sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Alvarez Fanjul et al., 2019). More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Alvarez Fanjul et al., 2019). '''CONTEXT''' The Sea Surface Temperature (SST) is one of the essential ocean variables, hence the monitoring of this variable is of key importance, since its variations can affect the ocean circulation, marine ecosystems, and ocean-atmosphere exchange processes. As the oceans continuously interact with the atmosphere, trends of sea surface temperature can also have an effect on the global climate. While the global-averaged sea surface temperatures have increased since the beginning of the 20th century (Hartmann et al., 2013) in the North Atlantic, anomalous cold conditions have also been reported since 2014 (Mulet et al., 2018; Dubois et al., 2018). The IBI area is a complex dynamic region with a remarkable variety of ocean physical processes and scales involved. The SST field in the region is strongly dependent on latitude, with higher values towards the South (Locarnini et al. 2013). This latitudinal gradient is supported by the presence of the eastern part of the North Atlantic subtropical gyre that transports cool water from the northern latitudes towards the equator. Additionally, the IBI region is under the influence of the Sea Level Pressure dipole established between the Icelandic low and the Bermuda high. Therefore, the interannual and interdecadal variability of the surface temperature field may be influenced by the North Atlantic Oscillation pattern (Czaja and Frankignoul, 2002; Flatau et al., 2003). Upwelling processes, taking place in the coastal margins, are also relevant in the IBI region. The most referenced one is the eastern boundary coastal upwelling system off the African and western Iberian coast (Sotillo et al., 2016), although other smaller upwelling systems have also been described in the northern coast of the Iberian Peninsula (Alvarez et al., 2011), the south-western Irish coast (Edwars et al., 1996) and the European Continental Slope (Dickson, 1980). '''CMEMS KEY FINDINGS''' In the IBI region, the 99th mean percentile for 1993-2023 shows a north-south pattern driven by the climatological distribution of temperatures in the North Atlantic. In the coastal regions of Africa and the Iberian Peninsula, the mean values are influenced by the upwelling processes (Sotillo et al., 2016). These results are consistent with the ones presented in Álvarez Fanjul (2019) for the period 1993-2016. The analysis of the 99th percentile SST anomaly for the year 2024 reveals that the northeastern Atlantic region, between latitudes 36° N and 48° N, experienced thermal anomalies exceeding twice the standard deviation. Similar anomalies are also observed near the northeastern Iberian Peninsula, suggesting that inshore and coastal areas may have been affected as well. In contrast, the upwelling region west of the Iberian Peninsula shows negative anomalies in maximum SST, indicating an intensification of upwelling processes in this area. '''DOI (product):''' https://doi.org/10.48670/moi-00254