Metagenomic analysis of clams from Sanaga river in Cameroon to describe the virome

'''DEFINITION''' The Strong Wave Incidence index is proposed to quantify the variability of strong wave conditions in the Iberia-Biscay-Ireland regional seas. The anomaly of exceeding a threshold of Significant Wave Height is used to characterize the wave behavior. A sensitivity test of the threshold has been performed evaluating the differences using several ones (percentiles 75, 80, 85, 90, and 95). From this indicator, it has been chosen the 90th percentile as the most representative, coinciding with the state-of-the-art. Two Copernicus Marine products are used to compute the Strong Wave Incidence index: * IBI-WAV-MYP: '''IBI_MULTIYEAR_WAV_005_006''' * IBI-WAV-NRT: '''IBI_ANALYSISFORECAST_WAV_005_005''' The Strong Wave Incidence index (SWI) is defined as the difference between the climatic frequency of exceedance (Fclim) and the observational frequency of exceedance (Fobs) of the threshold defined by the 90th percentile (ThP90) of Significant Wave Height (SWH) computed on a monthly basis from hourly data of IBI-WAV-MYP product: SWI = Fobs(SWH > ThP90) – Fclim(SWH > ThP90) Since the Strong Wave Incidence index is defined as a difference of a climatic mean and an observed value, it can be considered an anomaly. Such index represents the percentage that the stormy conditions have occurred above/below the climatic average. Thus, positive/negative values indicate the percentage of hourly data that exceed the threshold above/below the climatic average, respectively. '''CONTEXT''' Ocean waves have a high relevance over the coastal ecosystems and human activities. Extreme wave events can entail severe impacts over human infrastructures and coastal dynamics. However, the incidence of severe (90th percentile) wave events also have valuable relevance affecting the development of human activities and coastal environments. The Strong Wave Incidence index based on the Copernicus Marine regional analysis and reanalysis product provides information on the frequency of severe wave events. The IBI-MFC covers the Europe’s Atlantic coast in a region bounded by the 26ºN and 56ºN parallels, and the 19ºW and 5ºE meridians. The western European coast is located at the end of the long fetch of the subpolar North Atlantic (Mørk et al., 2010), one of the world’s greatest wave generating regions (Folley, 2017). Several studies have analyzed changes of the ocean wave variability in the North Atlantic Ocean (Bacon and Carter, 1991; Kushnir et al., 1997; WASA Group, 1998; Bauer, 2001; Wang and Swail, 2004; Dupuis et al., 2006; Wolf and Woolf, 2006; Dodet et al., 2010; Young et al., 2011; Young and Ribal, 2019). The observed variability is composed of fluctuations ranging from the weather scale to the seasonal scale, together with long-term fluctuations on interannual to decadal scales associated with large-scale climate oscillations. Since the ocean surface state is mainly driven by wind stresses, part of this variability in Iberia-Biscay-Ireland region is connected to the North Atlantic Oscillation (NAO) index (Bacon and Carter, 1991; Hurrell, 1995; Bouws et al., 1996, Bauer, 2001; Woolf et al., 2002; Tsimplis et al., 2005; Gleeson et al., 2017). However, later studies have quantified the relationships between the wave climate and other atmospheric climate modes such as the East Atlantic pattern, the Arctic Oscillation pattern, the East Atlantic Western Russian pattern and the Scandinavian pattern (Izaguirre et al., 2011, Martínez-Asensio et al., 2016). The Strong Wave Incidence index provides information on incidence of stormy events in four monitoring regions in the IBI domain. The selected monitoring regions (Figure 1.A) are aimed to provide a summarized view of the diverse climatic conditions in the IBI regional domain: Wav1 region monitors the influence of stormy conditions in the West coast of Iberian Peninsula, Wav2 region is devoted to monitor the variability of stormy conditions in the Bay of Biscay, Wav3 region is focused in the northern half of IBI domain, this region is strongly affected by the storms transported by the subpolar front, and Wav4 is focused in the influence of marine storms in the North-East African Coast, the Gulf of Cadiz and Canary Islands. More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Pascual et al., 2020). '''CMEMS KEY FINDINGS''' The trend analysis of the SWI index for the period 1980–2024 shows statistically significant trends (at the 99% confidence level) in wave incidence, with an increase of at least 0.05 percentage points per year in regions WAV1, WAV3, and WAV4. The analysis of the historical period, based on reanalysis data, highlights the major wave events recorded in each monitoring region. In region WAV1 (panel B), the maximum wave event occurred in February 2014, resulting in a 28% increase in strong wave conditions. In region WAV2 (panel C), two notable wave events were identified in November 2009 and February 2014, with increases of 16–18% in strong wave conditions. Similarly, in region WAV3 (panel D), a major event occurred in February 2014, marking one of the most intense events in the region with a 20% increase in storm wave conditions. Additionally, a comparable storm affected the region two months earlier, in December 2013. In region WAV4 (panel E), the most extreme event took place in January 1996, producing a 25% increase in strong wave conditions. Although each monitoring region is generally affected by independent wave events, the analysis reveals several historical events with above-average wave activity that propagated across multiple regions: November–December 2010 (WAV3 and WAV2), February 2014 (WAV1, WAV2, and WAV3), and February–March 2018 (WAV1 and WAV4). The analysis of the near-real-time (NRT) period (from January 2024 onward) identifies a significant event in February 2024 that impacted regions WAV1 and WAV4, resulting in increases of 20% and 15% in strong wave conditions, respectively. For region WAV4, this event represents the second most intense event recorded in the region. '''DOI (product):''' https://doi.org/10.48670/moi-00251

'''This product has been archived''' '''DEFINITION''' The CMEMS IBI_OMI_tempsal_extreme_var_temp_mean_and_anomaly OMI indicator is based on the computation of the annual 99th percentile of Sea Surface Temperature (SST) from model data. Two different CMEMS products are used to compute the indicator: The Iberia-Biscay-Ireland Multi Year Product (IBI_MULTIYEAR_PHY_005_002) and the Analysis product (IBI_ANALYSISFORECAST_PHY_005_001). Two parameters have been considered for this OMI: • Map of the 99th mean percentile: It is obtained from the Multi Year Product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged over the whole period (1993-2021). • Anomaly of the 99th percentile in 2022: The 99th percentile of the year 2022 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile from the 2022 percentile. This indicator is aimed at monitoring the extremes of sea surface temperature every year and at checking their variations in space. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This study of extreme variability was first applied to the sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Alvarez Fanjul et al., 2019). More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Alvarez Fanjul et al., 2019). '''CONTEXT''' The Sea Surface Temperature is one of the essential ocean variables, hence the monitoring of this variable is of key importance, since its variations can affect the ocean circulation, marine ecosystems, and ocean-atmosphere exchange processes. As the oceans continuously interact with the atmosphere, trends of sea surface temperature can also have an effect on the global climate. While the global-averaged sea surface temperatures have increased since the beginning of the 20th century (Hartmann et al., 2013) in the North Atlantic, anomalous cold conditions have also been reported since 2014 (Mulet et al., 2018; Dubois et al., 2018). The IBI area is a complex dynamic region with a remarkable variety of ocean physical processes and scales involved. The Sea Surface Temperature field in the region is strongly dependent on latitude, with higher values towards the South (Locarnini et al. 2013). This latitudinal gradient is supported by the presence of the eastern part of the North Atlantic subtropical gyre that transports cool water from the northern latitudes towards the equator. Additionally, the Iberia-Biscay-Ireland region is under the influence of the Sea Level Pressure dipole established between the Icelandic low and the Bermuda high. Therefore, the interannual and interdecadal variability of the surface temperature field may be influenced by the North Atlantic Oscillation pattern (Czaja and Frankignoul, 2002; Flatau et al., 2003). Also relevant in the region are the upwelling processes taking place in the coastal margins. The most referenced one is the eastern boundary coastal upwelling system off the African and western Iberian coast (Sotillo et al., 2016), although other smaller upwelling systems have also been described in the northern coast of the Iberian Peninsula (Alvarez et al., 2011), the south-western Irish coast (Edwars et al., 1996) and the European Continental Slope (Dickson, 1980). '''CMEMS KEY FINDINGS''' In the IBI region, the 99th mean percentile for 1993-2021 shows a north-south pattern driven by the climatological distribution of temperatures in the North Atlantic. In the coastal regions of Africa and the Iberian Peninsula, the mean values are influenced by the upwelling processes (Sotillo et al., 2016). These results are consistent with the ones presented in Álvarez Fanjul (2019) for the period 1993-2016. The analysis of the 99th percentile anomaly in the year 2023 shows that this period has been affected by a severe impact of maximum SST values. Anomalies exceeding the standard deviation affect almost the entire IBI domain, and regions impacted by thermal anomalies surpassing twice the standard deviation are also widespread below the 43ºN parallel. Extreme SST values exceeding twice the standard deviation affect not only the open ocean waters but also the easter boundary upwelling areas such as the northern half of Portugal, the Spanish Atlantic coast up to Cape Ortegal, and the African coast south of Cape Aguer. It is worth noting the impact of anomalies that exceed twice the standard deviation is widespread throughout the entire Mediterranean region included in this analysis. '''DOI (product):''' https://doi.org/10.48670/moi-00254

Assessments run at AFWG provide the scientific basis for the management of cod, haddock, saithe, redfish, Greenland halibut and capelin in subareas 1 and 2. Taking the catch values provided by the Norwegian fisheries ministry for Norwegian catches1 and raising the total landed value to the total catches gives an approximate nominal first-hand landed value for the combined AFWG stocks of ca. 20 billion NOK or ca. 2 billion EUR (2018 estimates).

The present data set concerne metabarcoding raw reads produced using 4 different PCR targeting polymerase or capside coding region of the genoyupe I and II of norovirus. Test samples of norovirus with serial dilutions in pure water and after a bio-accumulation in oysters. Sequencing was made after VirCapSeq-VERT approach.

Cette couche recense les Zones d’Activités Economiques (ZAE) présentes sur le département de la Charente. Initialement crée par Charente Développement, il s'agit d'un surfacique qui permet d'identifier précisément le contour de ces zones en se calant sur les données du Cadastre.

Level 2 sub-skin Sea Surface Temperature derived from AVHRR on Metop, global and provided in full-resolution swath (1 km at nadir), in GHRSST compliant netCDF format. The satellite input data has successively come from Metop-A, Metop-B and Metop-C level 1 data processed at EUMETSAT. SST is retrieved from AVHRR infrared channels (3.7, 10.8 and 12.0 µm) using a multispectral algorithm and a cloud mask. Atmospheric profiles of water vapor and temperature from a numerical weather prediction model, Sea Surface Temperature from an analysis, together with a radiative transfer model, are used to correct the multispectral algorithm for regional and seasonal biases due to changing atmospheric conditions. The quality of the products is monitored regularly by daily comparison of the satellite estimates against buoy measurements.The product format is compliant with the GHRSST Data Specification (GDS) version 2. Users are advised to use data only with quality levels 3,4 and 5.

Pôles de la CAPB correspondant aux anciens EPCI

The GEBCO_2020 Grid was released in May 2020 and is the second global bathymetric product released by the General Bathymetric Chart of the Oceans (GEBCO) and has been developed through the Nippon Foundation-GEBCO Seabed 2030 Project. The GEBCO_2020 Grid provides global coverage of elevation data in meters on a 15 arc-second grid of 43200 rows x 86400 columns, giving 3,732,480,000 data points. Grid Development The GEBCO_2020 Grid is a continuous, global terrain model for ocean and land with a spatial resolution of 15 arc seconds. The grid uses as a ‘base’ Version 2 of the SRTM15+ data set (Tozer et al, 2019). This data set is a fusion of land topography with measured and estimated seafloor topography. It is augmented with the gridded bathymetric data sets developed by the four Seabed 2030 Regional Centers. The Regional Centers have compiled gridded bathymetric data sets, largely based on multibeam data, for their areas of responsibility. These regional grids were then provided to the Global Center. For areas outside of the polar regions (primarily south of 60°N and north of 50°S), these data sets are in the form of 'sparse grids', i.e. only grid cells that contain data were populated. For the polar regions, complete grids were provided due to the complexities of incorporating data held in polar coordinates. The compilation of the GEBCO_2020 Grid from these regional data grids was carried out at the Global Center, with the aim of producing a seamless global terrain model. In contrast to the development of the previous GEBCO grid, GEBCO_2019, the data sets provided as sparse grids by the Regional Centers were included on to the base grid without any blending, i.e. grid cells in the base grid were replaced with data from the sparse grids. This was with aim of avoiding creating edge effects, 'ridges and ripples', at the boundaries between the sparse grids and base grid during the blending process used previously. In addition, this allows a clear identification of the data source within the grid, with no cells being 'blended' values. Routines from Generic Mapping Tools (GMT) system were used to do the merging of the data sets. For the polar data sets, and the adjoining North Sea area, supplied in the form of complete grids these data sets were included using feather blending techniques from GlobalMapper software version 11.0, made available by Blue Marble Geographic. The GEBCO_2020 Grid includes data sets from a number of international and national data repositories and regional mapping initiatives. For information on the data sets included in the GEBCO_2020 Grid, please see the list of contributions included in this release of the grid (https://www.gebco.net/data_and_products/gridded_bathymetry_data/gebco_2020/#compilations).

The Marine Reporting Units (MRUs) are used within the reporting obligations of the Marine Strategy Framework Directive (MSFD) in order to link the implementation of the different articles to specific marine areas. The MRUs can be of varying sizes, according to the appropriate scale for the different reports (e.g. region, sub-region, regional or sub-regional subdivision, Member State marine waters, WFD coastal waters, etc.), as indicated in the Good Environmental Status 2017 Decision. The present data set is the second public version released of the MRUs used during the MSFD 2018 reporting exercise on the update of Articles 8, 9 and 10. Only the MRUs of those countries that have gone through the reporting exercise by June 2020 have been included in this data set. Apart from the countries included already in version 1 of the dataset (SE, FI, EE, LV, PL, DE, DK, NL, BE, FR, ES, HR and RO), this version also includes seven more countries, namely MT, LT, IT, SI, CY, PT and IE. The data set is distributed in SHP and in INSPIRE-compliant GML format, made available also through an INSPIRE compliant ATOM service.