Pôles de la CAPB correspondant aux anciens EPCI

The present data set concerne metabarcoding raw reads produced using 4 different PCR targeting polymerase or capside coding region of the genoyupe I and II of norovirus. Test samples of norovirus with serial dilutions in pure water and after a bio-accumulation in oysters. Sequencing was made after VirCapSeq-VERT approach.

The SDC_GLO_CLIM_N2 product contains seasonally averaged Brunt-Vaisala squared frequency profiles using the density profiles computed in SeadataCloud Global Ocean Climatology - Density Climatology. The Density Climatology product uses the Profiling Floats (PFL) data from World Ocean database 18 for the time period 2003 to 2017 with a Nonlinear Quality procedure applied on it. Computed BVF profiles are averaged seasonally into 5x5 degree boxes for Atlantic and Pacific Oceans. For data access, please register at http://www.marine-id.org/.

'''DEFINITION''' The Strong Wave Incidence index is proposed to quantify the variability of strong wave conditions in the Iberia-Biscay-Ireland regional seas. The anomaly of exceeding a threshold of Significant Wave Height is used to characterize the wave behavior. A sensitivity test of the threshold has been performed evaluating the differences using several ones (percentiles 75, 80, 85, 90, and 95). From this indicator, it has been chosen the 90th percentile as the most representative, coinciding with the state-of-the-art. Two Copernicus Marine products are used to compute the Strong Wave Incidence index: * IBI-WAV-MYP: '''IBI_MULTIYEAR_WAV_005_006''' * IBI-WAV-NRT: '''IBI_ANALYSISFORECAST_WAV_005_005''' The Strong Wave Incidence index (SWI) is defined as the difference between the climatic frequency of exceedance (Fclim) and the observational frequency of exceedance (Fobs) of the threshold defined by the 90th percentile (ThP90) of Significant Wave Height (SWH) computed on a monthly basis from hourly data of IBI-WAV-MYP product: SWI = Fobs(SWH > ThP90) – Fclim(SWH > ThP90) Since the Strong Wave Incidence index is defined as a difference of a climatic mean and an observed value, it can be considered an anomaly. Such index represents the percentage that the stormy conditions have occurred above/below the climatic average. Thus, positive/negative values indicate the percentage of hourly data that exceed the threshold above/below the climatic average, respectively. '''CONTEXT''' Ocean waves have a high relevance over the coastal ecosystems and human activities. Extreme wave events can entail severe impacts over human infrastructures and coastal dynamics. However, the incidence of severe (90th percentile) wave events also have valuable relevance affecting the development of human activities and coastal environments. The Strong Wave Incidence index based on the Copernicus Marine regional analysis and reanalysis product provides information on the frequency of severe wave events. The IBI-MFC covers the Europe’s Atlantic coast in a region bounded by the 26ºN and 56ºN parallels, and the 19ºW and 5ºE meridians. The western European coast is located at the end of the long fetch of the subpolar North Atlantic (Mørk et al., 2010), one of the world’s greatest wave generating regions (Folley, 2017). Several studies have analyzed changes of the ocean wave variability in the North Atlantic Ocean (Bacon and Carter, 1991; Kushnir et al., 1997; WASA Group, 1998; Bauer, 2001; Wang and Swail, 2004; Dupuis et al., 2006; Wolf and Woolf, 2006; Dodet et al., 2010; Young et al., 2011; Young and Ribal, 2019). The observed variability is composed of fluctuations ranging from the weather scale to the seasonal scale, together with long-term fluctuations on interannual to decadal scales associated with large-scale climate oscillations. Since the ocean surface state is mainly driven by wind stresses, part of this variability in Iberia-Biscay-Ireland region is connected to the North Atlantic Oscillation (NAO) index (Bacon and Carter, 1991; Hurrell, 1995; Bouws et al., 1996, Bauer, 2001; Woolf et al., 2002; Tsimplis et al., 2005; Gleeson et al., 2017). However, later studies have quantified the relationships between the wave climate and other atmospheric climate modes such as the East Atlantic pattern, the Arctic Oscillation pattern, the East Atlantic Western Russian pattern and the Scandinavian pattern (Izaguirre et al., 2011, Martínez-Asensio et al., 2016). The Strong Wave Incidence index provides information on incidence of stormy events in four monitoring regions in the IBI domain. The selected monitoring regions (Figure 1.A) are aimed to provide a summarized view of the diverse climatic conditions in the IBI regional domain: Wav1 region monitors the influence of stormy conditions in the West coast of Iberian Peninsula, Wav2 region is devoted to monitor the variability of stormy conditions in the Bay of Biscay, Wav3 region is focused in the northern half of IBI domain, this region is strongly affected by the storms transported by the subpolar front, and Wav4 is focused in the influence of marine storms in the North-East African Coast, the Gulf of Cadiz and Canary Islands. More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Pascual et al., 2020). '''CMEMS KEY FINDINGS''' The trend analysis of the SWI index for the period 1980–2024 shows statistically significant trends (at the 99% confidence level) in wave incidence, with an increase of at least 0.05 percentage points per year in regions WAV1, WAV3, and WAV4. The analysis of the historical period, based on reanalysis data, highlights the major wave events recorded in each monitoring region. In region WAV1 (panel B), the maximum wave event occurred in February 2014, resulting in a 28% increase in strong wave conditions. In region WAV2 (panel C), two notable wave events were identified in November 2009 and February 2014, with increases of 16–18% in strong wave conditions. Similarly, in region WAV3 (panel D), a major event occurred in February 2014, marking one of the most intense events in the region with a 20% increase in storm wave conditions. Additionally, a comparable storm affected the region two months earlier, in December 2013. In region WAV4 (panel E), the most extreme event took place in January 1996, producing a 25% increase in strong wave conditions. Although each monitoring region is generally affected by independent wave events, the analysis reveals several historical events with above-average wave activity that propagated across multiple regions: November–December 2010 (WAV3 and WAV2), February 2014 (WAV1, WAV2, and WAV3), and February–March 2018 (WAV1 and WAV4). The analysis of the near-real-time (NRT) period (from January 2024 onward) identifies a significant event in February 2024 that impacted regions WAV1 and WAV4, resulting in increases of 20% and 15% in strong wave conditions, respectively. For region WAV4, this event represents the second most intense event recorded in the region. '''DOI (product):''' https://doi.org/10.48670/moi-00251

This study gathers multi-year environmental sequencing datasets generated within the French ROME pilot observatory network. It includes eDNA metabarcoding and RNA-based analyses from water samples, oyster tissues, and viral fractions collected across four French estuarine ecosystems between 2020 and 2023, supporting integrated monitoring of coastal microbiomes and microbial hazards.

This dataset is the coastal zone land surface region from Europe, derived from the coastline towards inland, as a series of 10 consecutive buffers of 1km width each. The coastline is defined by the extent of the Corine Land Cover 2018 (raster 100m) version 20 accounting layer. In this version all Corine Land Cover pixels with a value of 523, corresponding to sea and oceans, were considered as non-land surface and thus were excluded from the buffer zone.

The technologies developed will expand our knowledge of the ocean’s interconnected systems and provide tangible benefits to the industries that rely on them, such as fisheries and aquaculture. The data generated will also support conservation initiatives and provide vital information to policy makers. The future impact of these valuable technologies relies on their accessibility. Therefore, TechOceanS technology pilots will be low-cost and place minimal demands on existing infrastructure, allowing them to be made available for use by all countries regardless of resources. TechOceanS will also work with the IOC-UNESCO to develop “ocean best practices” standards for training and monitoring of metrology and ocean systems.

'''DEFINITION''' The CMEMS NORTHWESTSHELF_OMI_tempsal_extreme_var_temp_mean_and_anomaly OMI indicator is based on the computation of the annual 99th percentile of Sea Surface Temperature (SST) from model data. Two different CMEMS products are used to compute the indicator: The North-West Shelf Multi Year Product (NWSHELF_MULTIYEAR_PHY_004_009) and the Analysis product (NORTHWESTSHELF_ANALYSIS_FORECAST_PHY_004_013). Two parameters are included on this OMI: * Map of the 99th mean percentile: It is obtained from the Multi Year Product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged over the whole period (1993-2019). * Anomaly of the 99th percentile in 2020: The 99th percentile of the year 2020 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile from the 2020 percentile. This indicator is aimed at monitoring the extremes of sea surface temperature every year and at checking their variations in space. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This study of extreme variability was first applied to the sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Alvarez Fanjul et al., 2019). More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Alvarez Fanjul et al., 2019). '''CONTEXT''' This domain comprises the North West European continental shelf where depths do not exceed 200m and deeper Atlantic waters to the North and West. For these deeper waters, the North-South temperature gradient dominates (Liu and Tanhua, 2021). Temperature over the continental shelf is affected also by the various local currents in this region and by the shallow depth of the water (Elliott et al., 1990). Atmospheric heat waves can warm the whole water column, especially in the southern North Sea, much of which is no more than 30m deep (Holt et al., 2012). Warm summertime water observed in the Norwegian trench is outflow heading North from the Baltic Sea and from the North Sea itself. '''CMEMS KEY FINDINGS''' The 99th percentile SST product can be considered to represent approximately the warmest 4 days for the sea surface in Summer. Maximum anomalies for 2020 are up to 4oC warmer than the 1993-2019 average in the western approaches, Celtic and Irish Seas, English Channel and the southern North Sea. For the atmosphere, Summer 2020 was exceptionally warm and sunny in southern UK (Kendon et al., 2021), with heatwaves in June and August. Further north in the UK, the atmosphere was closer to long-term average temperatures. Overall, the 99th percentile SST anomalies show a similar pattern, with the exceptional warm anomalies in the south of the domain. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product)''' https://doi.org/10.48670/moi-00273

Level 2 sub-skin Sea Surface Temperature derived from AVHRR on Metop, global and provided in full-resolution swath (1 km at nadir), in GHRSST compliant netCDF format. The satellite input data has successively come from Metop-A, Metop-B and Metop-C level 1 data processed at EUMETSAT. SST is retrieved from AVHRR infrared channels (3.7, 10.8 and 12.0 µm) using a multispectral algorithm and a cloud mask. Atmospheric profiles of water vapor and temperature from a numerical weather prediction model, Sea Surface Temperature from an analysis, together with a radiative transfer model, are used to correct the multispectral algorithm for regional and seasonal biases due to changing atmospheric conditions. The quality of the products is monitored regularly by daily comparison of the satellite estimates against buoy measurements.The product format is compliant with the GHRSST Data Specification (GDS) version 2. Users are advised to use data only with quality levels 3,4 and 5.

'''DEFINITION''' The Iberia Biscay Ireland (IBI) Sea Surface Temperature extreme from Reanalysis ocean monitoring indicator (OMI) (OMI_CLIMATE_TEMPSAL_IBI_extreme_var_temp_mean_and_anomaly) is based on the computation of the annual 99th percentile of Sea Surface Temperature (SST) from model data. Two different Copernicus Marine products are used to compute the indicator: The IBI Reanalysis (IBI_MULTIYEAR_PHY_005_002) and the IBI Analysis product (IBI_ANALYSISFORECAST_PHY_005_001). Two parameters have been considered for this OMI: * '''Map of the 99th mean percentile''': It is obtained from the reanalysis product, the annual 99th percentile is computed for each year of the product. The percentiles are temporally averaged over the whole period (1993-2023). * '''Anomaly of the 99th percentile in 2024''': The 99th percentile of the year 2024 is computed from the Analysis product. The anomaly is obtained by subtracting the mean percentile from the 2024 percentile. This indicator is aimed at monitoring the extremes of sea surface temperature every year and at checking their variations in space. The use of percentiles instead of annual maxima, makes this extremes study less affected by individual data. This study of extreme variability was first applied to the sea level variable (Pérez Gómez et al 2016) and then extended to other essential variables, such as sea surface temperature and significant wave height (Pérez Gómez et al 2018 and Alvarez Fanjul et al., 2019). More details and a full scientific evaluation can be found in the CMEMS Ocean State report (Alvarez Fanjul et al., 2019). '''CONTEXT''' The Sea Surface Temperature (SST) is one of the essential ocean variables, hence the monitoring of this variable is of key importance, since its variations can affect the ocean circulation, marine ecosystems, and ocean-atmosphere exchange processes. As the oceans continuously interact with the atmosphere, trends of sea surface temperature can also have an effect on the global climate. While the global-averaged sea surface temperatures have increased since the beginning of the 20th century (Hartmann et al., 2013) in the North Atlantic, anomalous cold conditions have also been reported since 2014 (Mulet et al., 2018; Dubois et al., 2018). The IBI area is a complex dynamic region with a remarkable variety of ocean physical processes and scales involved. The SST field in the region is strongly dependent on latitude, with higher values towards the South (Locarnini et al. 2013). This latitudinal gradient is supported by the presence of the eastern part of the North Atlantic subtropical gyre that transports cool water from the northern latitudes towards the equator. Additionally, the IBI region is under the influence of the Sea Level Pressure dipole established between the Icelandic low and the Bermuda high. Therefore, the interannual and interdecadal variability of the surface temperature field may be influenced by the North Atlantic Oscillation pattern (Czaja and Frankignoul, 2002; Flatau et al., 2003). Upwelling processes, taking place in the coastal margins, are also relevant in the IBI region. The most referenced one is the eastern boundary coastal upwelling system off the African and western Iberian coast (Sotillo et al., 2016), although other smaller upwelling systems have also been described in the northern coast of the Iberian Peninsula (Alvarez et al., 2011), the south-western Irish coast (Edwars et al., 1996) and the European Continental Slope (Dickson, 1980). '''CMEMS KEY FINDINGS''' In the IBI region, the 99th mean percentile for 1993-2023 shows a north-south pattern driven by the climatological distribution of temperatures in the North Atlantic. In the coastal regions of Africa and the Iberian Peninsula, the mean values are influenced by the upwelling processes (Sotillo et al., 2016). These results are consistent with the ones presented in Álvarez Fanjul (2019) for the period 1993-2016. The analysis of the 99th percentile SST anomaly for the year 2024 reveals that the northeastern Atlantic region, between latitudes 36° N and 48° N, experienced thermal anomalies exceeding twice the standard deviation. Similar anomalies are also observed near the northeastern Iberian Peninsula, suggesting that inshore and coastal areas may have been affected as well. In contrast, the upwelling region west of the Iberian Peninsula shows negative anomalies in maximum SST, indicating an intensification of upwelling processes in this area. '''DOI (product):''' https://doi.org/10.48670/moi-00254