This study aims to compare different metabarcoding sequences of commercially fished shrimps collected by tree counties on the North Brazil Shelf Large Marine Ecosystem

The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.

160 whole genomes sequences obtained from 160 individual fish samples representing about 100 different species present in Gulf of Lion, and bay of Biscay.

Develop parentage assignment panels using genetic fingerprinting of pearl oysters for use in commercial hatcheries and research to manage pedigrees in order to limit the risks of loss of genetic variability and increased inbreeding of commercial lines.

WGS of SARS-CoV-2 by Oxford Nanopore Technology from raw wastewater samples collected in France, 2020-2021

This dataset concerns sequences from the metabarcoding analysis (bacteria & archaea) of 4 hydrothermal sites from the TAG field (2 inactive sites & 2 weakly active sites) collected during the HERMINE2 oceanographic campaign.

Here, our study aimed to first assess the influence of plastic on the bacterial community belonging to water, plastic and the microbiome of the giant clam and on the organism's physiology of this putative sentinel species. Our second objective was to identify bacteria whose abundance varies significantly with plastic concentration. Overall, this study will fill the gap towards a better understanding of the impact of plastic pollution on bacterial community assemblages in both inert and living environments.

In order to better characterize the fish biodiversity associated to the presence of cetaceans, especially the common Dolphin, from the Bay of Biscay, sequences from a 16S fragment were obtained from water samples acquired close to groups of dolphins.

Distribution of catch from deep-sea impacting fishing on the North Atlantic (18°N to 76°N and 36°E to 98°W), for the period 2010-2015. The average of yearly fishing catch for the period 2010-2015 is displayed as an index on the ATLAS grid of 25km * 25km resolution. Source data originated from the Global Fisheries Landings V4.0 database. The dataset was filtered to select only the fishing gears that have an impact on large areas of the seafloor (dredges, bottom trawls, and Danish seines). Within each cell, all remaining catch records were summed to get the total catch rate of the considered year. This dataset was built to feed a basin-wide spatial conservation planning exercise, targeting the deep sea of the North Atlantic. The goal of this approach was to identify conservation priority areas for Vulnerable Marine Ecosystems (VMEs) and deep fish species, based on the distribution of species and habitats, human activities and current spatial management.

scRNA-seq reads from a Pacific oyster (Crassostrea gigas) hemocyte preparation. Hemocytes were isolated from a unique immunologically naive animal (Ifremer Standardized Animal, 18 months) and single-cell drop-seq technology was applied to 3,000 individual hemocytes.