Catalogue PIGMA
Common dolphin (Delphinus delphis) and other delphinid sdRAD-seq sequences, digested with the SbfI enzyme
In order to better characterize the population structure of common dolphins (Delphinus delphis) in the Bay of Biscay, a single digest RADseq (SbfI enzyme) protocol was used to obtain paired-end, 150bp NGS sequences on the Illumina NovaSeq 6000 sequencing platform. D. delphis samples from the Western North Atlantic, and samples from three other delphinid species were included as outgroups.
Simple
- Date (Creation)
- 2025-01-31
- Date (Publication)
- 2025-02-06
- Identifier
- FR-330-715-368-00032-delmoges_dolphin_sdRAD_SEQ
- Credit
- Marbec / Laboratoire Evolution et Génétique des Populations and UBO - Projet DELMOGES
Author
Observatoire Pelagis, UAR 3462 La Rochelle Université/CNRS, 17000 La Rochelle, France
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Dabin, Willy
Author
MARBEC (Marine Biodiversity, Exploitation, and Conservation), UMR IRD/Ifremer/Université de Montpellier/CNRS, 34203 Sète cedex, France
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Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5
,
Montpellier
,
France
04 67 14 36 72
- GEMET - INSPIRE themes, version 1.0
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- Habitats and biotopes
- Thèmes Sextant
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- /Biological Environment/Bioinformatics
- Use limitation
- CC-BY (Creative Commons - Attribution)
- Access constraints
- Copyright
- Use constraints
- Other restrictions
- Spatial representation type
- Grid
- Metadata language
- English
- Character set
- UTF8
- Topic category
-
- Oceans
N
S
E
W
))
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
- Distribution format
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(
)
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(
)
- OnLine resource
- /home/ref-bioinfo-extranet/ifremer/marbec/delmoges-rad ( NETWORK:LINK )
- OnLine resource
- Digital Object Identifier (DOI) ( DOI )
- Hierarchy level
- Dataset
- Statement
- A total of 137 individuals were sequenced (110 individuals of Delphinus delphis, including 4 technical replicates; 4 Stenella coeruleoalba; 4 Cephalorhynchus commersonii; 1 Orcinus orca). Libraries were prepared and sequenced by Montpellier GenomiX in 2024. The raw reads were demultiplexed, and PCR clones were filtered.
- File identifier
- e4be6a50-9b54-4b81-85de-f94c09fa9286 XML
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2025-02-17T11:01:39.434544Z
- Metadata standard name
- ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
- 1.0
Point of contact
IFREMER
-
Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5
,
Montpellier
,
France
Overviews
Spatial extent
N
S
E
W
Provided by
Associated resources
Not available