This product displays the stations where anthracene has been measured and the values present in EMODnet Chemistry infrastructure are always above the limit of detection or quantification (LOD/LOQ), i.e quality value equal to 1. It is necessary to take into account that LOD/LOQ can change with time. These products aggregate data by station, producing only one final value for each station (above, below or above/below). EMODnet Chemistry has included the gathering of contaminants data since the beginning of the project in 2009. For the maps for EMODnet Chemistry Phase III, it was requested to plot data per matrix (water,sediment, biota), per biological entity and per chemical substance. The series of relevant map products have been developed according to the criteria D8C1 of the MSFD Directive, specifically focusing on the requirements under the new Commission Decision 2017/848 (17th May 2017). The Commission Decision points to relevant threshold values that are specified in the WFD, as well as relating how these contaminants should be expressed (units and matrix etc.) through the related Directives i.e. Priority substances for Water. EU EQS Directive does not fix any threshold values in sediments. On the contrary Regional Sea Conventions provide some of them, and these values have been taken into account for the development of the visualization products. To produce the maps the following process has been followed: 1. Data collection through SeaDataNet standards (CDI+ODV) 2. Harvesting, harmonization, validation and P01 code decomposition of data 3. SQL query on data sets from point 2 4. Production of map with each point representing at least one record that match the criteria The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols. Preliminary processing were necessary to harmonize all the data : • For water: contaminants in the dissolved phase; • For sediment: data on total sediment (regardless of size class) or size class < 2000 μm • For biota: contaminant data will focus on molluscs, on fish (only in the muscle), and on crustaceans • Exclusion of data values equal to 0

'''This product has been archived''' For operationnal and online products, please visit https://marine.copernicus.eu '''DEFINITION''' This product includes the Mediterranean Sea satellite chlorophyll trend map from 1997 to 2020 based on regional chlorophyll reprocessed (REP) product as distributed by CMEMS OC-TAC. This dataset, derived from multi-sensor (SeaStar-SeaWiFS, AQUA-MODIS, NOAA20-VIIRS, NPP-VIIRS, Envisat-MERIS and Sentinel3A-OLCI) (at 1 km resolution) Rrs spectra produced by CNR using an in-house processing chain, is obtained by means of the Mediterranean Ocean Colour regional algorithms: an updated version of the MedOC4 (Case 1 (off-shore) waters, Volpe et al., 2019, with new coefficients) and AD4 (Case 2 (coastal) waters, Berthon and Zibordi, 2004). The processing chain and the techniques used for algorithms merging are detailed in Colella et al. (2021). The trend map is obtained by applying Colella et al. (2016) methodology, where the Mann-Kendall test (Mann, 1945; Kendall, 1975) and Sens’s method (Sen, 1968) are applied on deseasonalized monthly time series, as obtained from the X-11 technique (see e. g. Pezzulli et al. 2005), to estimate, trend magnitude and its significance. The trend is expressed in % per year that represents the relative changes (i.e., percentage) corresponding to the dimensional trend [mg m-3 y-1] with respect to the reference climatology (1997-2014). Only significant trends (p < 0.05) are included. '''CONTEXT''' Phytoplankton are key actors in the carbon cycle and, as such, recognised as an Essential Climate Variable (ECV). Chlorophyll concentration - as a proxy for phytoplankton - respond rapidly to changes in environmental conditions, such as light, temperature, nutrients and mixing (Colella et al. 2016). The character of the response depends on the nature of the change drivers, and ranges from seasonal cycles to decadal oscillations (Basterretxea et al. 2018). The Mediterranean Sea is an oligotrophic basin, where chlorophyll concentration decreases following a specific gradient from West to East (Colella et al. 2016). The highest concentrations are observed in coastal areas and at the river mouths, where the anthropogenic pressure and nutrient loads impact on the eutrophication regimes (Colella et al. 2016). The the use of long-term time series of consistent, well-calibrated, climate-quality data record is crucial for detecting eutrophication. Furthermore, chlorophyll analysis also demands the use of robust statistical temporal decomposition techniques, in order to separate the long-term signal from the seasonal component of the time series. '''CMEMS KEY FINDINGS''' Chlorophyll trend in the Mediterranean Sea, for the period 1997-2020, is negative over most of the basin. Positive trend areas are visible only in the southern part of the western Mediterranean basin, in the Gulf of Lion, Rhode Gyre and partially along the Croatian coast of the Adriatic Sea. On average the trend in the Mediterranean Sea is about -0.5% per year. Nevertheless, as shown by Salgado-Hernanz et al. (2019) in their analysis (related to 1998-2014 satellite observations), there is not a clear difference between western and eastern basins of the Mediterranean Sea. In the Ligurian Sea, the trend switch to negative values, differing from the positive regime observed in the trend maps of both Colella et al. (2016) and Salgado-Hernanz et al. (2019), referred, respectively, to 1998-2009 and 1998-2014 time period, respectively. The waters offshore the Po River mouth show weak negative trend values, partially differing from the markable negative regime observed in the 1998-2009 period (Colella et al., 2016), and definitely moving from the positive trend observed by Salgado-Hernanz et al. (2019). Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00260

The dataset represents the introduction of non-indigenous species in European seas. Non-indigenous species are species that have been spread as a result of human activities to areas where they do not belong naturally. The main concern are the invasive species, which are defined as causing a significant negative impact on biodiversity as well as serious economic and social consequences. The dataset has been prepared first by individually mapping each aquatic invasive species that had a distinctive distribution area, which had been provided by several non-indigenous species online databases. The distribution of the species were then resampled into the EEA 10 km grid and summed together, showing the number of non-indigenous species per grid cell. The temporal reference of the dataset covers the last 30 years (1989 - 2018). This dataset has been prepared for the calculation of the combined effect index, produced for the ETC/ICM Report 4/2019 "Multiple pressures and their combined effects in Europe's seas" available on: https://www.eionet.europa.eu/etcs/etc-icm/etc-icm-report-4-2019-multiple-pressures-and-their-combined-effects-in-europes-seas-1.

This product displays the stations present in EMODnet validated dataset where cadmium levels have been measured in water. EMODnet Chemistry has included the gathering of contaminants data since the beginning of the project in 2009. For the maps for EMODnet Chemistry Phase III, it was requested to plot data per matrix (water,sediment, biota), per biological entity and per chemical substance. The series of relevant map products have been developed according to the criteria D8C1 of the MSFD Directive, specifically focusing on the requirements under the new Commission Decision 2017/848 (17th May 2017). The Commission Decision points to relevant threshold values that are specified in the WFD, as well as relating how these contaminants should be expressed (units and matrix etc.) through the related Directives i.e. Priority substances for Water. EU EQS Directive does not fix any threshold values in sediments. On the contrary Regional Sea Conventions provide some of them, and these values have been taken into account for the development of the visualization products. To produce the maps the following process has been followed: 1. Data collection through SeaDataNet standards (CDI+ODV) 2. Harvesting, harmonization, validation and P01 code decomposition of data 3. SQL query on data sets from point 2 4. Production of map with each point representing at least one record that match the criteria The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols. Preliminary processing were necessary to harmonize all the data : • For water: contaminants in the dissolved phase; • For sediment: data on total sediment (regardless of size class) or size class < 2000 μm • For biota: contaminant data will focus on molluscs, on fish (only in the muscle), and on crustaceans • Exclusion of data values equal to 0

The SDC_MED_CLIM_TS_V1 product contains Temperature and Salinity Climatologies for Mediterranean Sea: monthly and seasonal fields for periods 1955-2017, 1955-1984 and 1985-2017 and seasonal fields for 6 decades covering the time period 1955 to 2017. The climatic fields were computed from an integrated Mediterranean Sea data set that combines data extracted from SeaDataNet infrastructure (https://doi.org/10.12770/2698a37e-c78b-4f78-be0b-ec536c4cb4b3) and Coriolis Ocean Dataset for Reanalysis (CORA5.2) distributed by the Copernicus Marine Service (http://marine.copernicus.eu/services-portfolio/access-to-products/?option=com_csw&view=details&product_id=INSITU_GLO_TS_REP_OBSERVATIONS_013_001_b). The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.4.0.

This vector dataset represents the benthic broad habitat types in Europe seas potentially affected by anchoring. The anchoring of vessels can produce damages to the seafloor and the loss of the habitat where it happens. It takes place in shallow waters, close to ports, where vessels have to wait for a spot in the port so they can load or offload (since ports have a limited amount of dockage). The anchoring areas allow vessels to safely anchor in protection from bad weather or other circumstances. The type of alterations to the habitats resulting from anchoring depend mainly on the dimensions and type of the anchor, as well as its movement resulting from the movement of the vessel due to currents or waves, which can increase the adverse effects. The dataset has been prepared in the context of the development of the first European Maritime Transport Environmental Report (to be published as an EMSA-EEA report in 2021).

This product displays the stations where benzo[A]pyrene has been measured and the values present in EMODnet Chemistry infrastructure are always above the limit of detection or quantification (LOD/LOQ), i.e quality value equal to 1. It is necessary to take into account that LOD/LOQ can change with time. These products aggregate data by station, producing only one final value for each station (above, below or above/below). EMODnet Chemistry has included the gathering of contaminants data since the beginning of the project in 2009. For the maps for EMODnet Chemistry Phase III, it was requested to plot data per matrix (water,sediment, biota), per biological entity and per chemical substance. The series of relevant map products have been developed according to the criteria D8C1 of the MSFD Directive, specifically focusing on the requirements under the new Commission Decision 2017/848 (17th May 2017). The Commission Decision points to relevant threshold values that are specified in the WFD, as well as relating how these contaminants should be expressed (units and matrix etc.) through the related Directives i.e. Priority substances for Water. EU EQS Directive does not fix any threshold values in sediments. On the contrary Regional Sea Conventions provide some of them, and these values have been taken into account for the development of the visualization products. To produce the maps the following process has been followed: 1. Data collection through SeaDataNet standards (CDI+ODV) 2. Harvesting, harmonization, validation and P01 code decomposition of data 3. SQL query on data sets from point 2 4. Production of map with each point representing at least one record that match the criteria The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols. Preliminary processing were necessary to harmonize all the data : • For water: contaminants in the dissolved phase; • For sediment: data on total sediment (regardless of size class) or size class < 2000 μm • For biota: contaminant data will focus on molluscs, on fish (only in the muscle), and on crustaceans • Exclusion of data values equal to 0

This product displays the stations where cadmium has been measured and the values present in EMODnet Chemistry infrastructure are always above the limit of detection or quantification (LOD/LOQ), i.e quality value equal to 1. It is necessary to take into account that LOD/LOQ can change with time. These products aggregate data by station, producing only one final value for each station (above, below or above/below). EMODnet Chemistry has included the gathering of contaminants data since the beginning of the project in 2009. For the maps for EMODnet Chemistry Phase III, it was requested to plot data per matrix (water,sediment, biota), per biological entity and per chemical substance. The series of relevant map products have been developed according to the criteria D8C1 of the MSFD Directive, specifically focusing on the requirements under the new Commission Decision 2017/848 (17th May 2017). The Commission Decision points to relevant threshold values that are specified in the WFD, as well as relating how these contaminants should be expressed (units and matrix etc.) through the related Directives i.e. Priority substances for Water. EU EQS Directive does not fix any threshold values in sediments. On the contrary Regional Sea Conventions provide some of them, and these values have been taken into account for the development of the visualization products. To produce the maps the following process has been followed: 1. Data collection through SeaDataNet standards (CDI+ODV) 2. Harvesting, harmonization, validation and P01 code decomposition of data 3. SQL query on data sets from point 2 4. Production of map with each point representing at least one record that match the criteria The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols. Preliminary processing were necessary to harmonize all the data : • For water: contaminants in the dissolved phase; • For sediment: data on total sediment (regardless of size class) or size class < 2000 μm • For biota: contaminant data will focus on molluscs, on fish (only in the muscle), and on crustaceans • Exclusion of data values equal to 0

The analysis was performed per season using DIVA software tool (Data-Interpolating Variational Analysis). The analyses products are stored as NetCDF CF files and made available as WMS layers for easy browsing and adding. Every step of the time dimension corresponds to a 6-year moving average from 1983 to 2016. The depth dimension spans from surface to 1000 m, with 21 vertical levels. The boundaries and overlapping zones between these regions were filtered to avoid any unrealistic spatial discontinuities. This combined water body dissolved oxygen concentration product is masked using the relative error threshold 0.5. Units: µmol/l Created by 'University of Liège, GeoHydrodynamics and Environment Research (ULiège-GHER)'. The data used as input for DIVA have been extracted from the EMODnet Chemistry Download Service: https://emodnet-chemistry.maris.nl/search Intermediate regional data products: Mediterranean Sea - DIVA 4D 6-year analysis of Water body dissolved inorganic nitrogen (DIN) 1990/2016 v2018, North Sea - DIVA 4D 6-year analysis of Water body dissolved inorganic nitrogen (DIN) 1980/2017 v2018, Black Sea - DIVA 4D 6-year analysis of Water body dissolved inorganic nitrogen (DIN) 1990/2016 v2018, North East Atlantic Ocean - DIVA 4D 6-year analysis of Water body dissolved inorganic nitrogen (DIN) 1984/2017 v2018, Baltic Sea - DIVA 4D 6-year analysis of Water body dissolved_inorganic_nitrogen_(DIN) 1980/2016 v2018

The BEAT+ tool builds on the EEA assessment tools developed and applied in the context of assessing the degree of contamination (CHASE+), eutrophication (HEAT+) and biodiversity (BEAT+) in Europe's seas. BEAT+ makes use of the same data sets and threshold values used in these assessments but recombines these in a new framework that addresses 'biodiversity condition'. BEAT+ has been designed to provide an assessment of the spatial variability of a range of biodiversity components by combining existing biodiversity indicators. The tool integrates data from normalised indicators to identify worst case status measures for different biodiversity components. The results are then linked to a standard gridE based Spatial Assessment Unit (SAU) which is used both for biodiversity and for pressures assessments (Andersen et al., 2014). These grid-based SAUs not only allow alignment of indicators for biodiversity and for pressures but provide a means for combining large assessment areas (e.g. for wide‐ranging species) with point data collected from biological surveys e.g. WFD monitoring. BEAT+ tool works by calculating a Biological Quality Ratio (BQR) which is an aggregated score of indicator outcomes within a grid square. To allow objective comparison, the indicator outcomes are normalised to a scale of 0 to 1, with five status classes at equal intervals on that scale (from Bad starting at 0, Poor at 0.2, Medium at 0.4, Good at 0.6 and High at 0.8). By this means, indicators based on different biological criteria can be aggregated in a consistent way. This metadata refers to dataset providing the results of classification of biodiversity status using the BEAT+ tool. The status is evaluated in five classes, where High and Good are recognised as ‘non-problem areas’ and Moderate, Poor and Bad are recognised as ‘problem areas’. The dataset covers: - BQR Assessment of all marine mammals combined (mainly focused on coastal and relatively stable inshore populations of seals, dolphins and porpoises) - BQR Assessment of seabirds and wading birds - BQR Assessment of commercial fish (as these have agreed targets defined on biomass and fishing mortality) - BQR Assessment of pelagic habitats - BQR Assessment of benthic habitats - BQR Assessment of worst-performing biodiversity groups - An overall synthesis of the Biological Quality Ratios (BQR) values (showing which are the worst -lowest- BQR values in each assessment grid cell. The ‘worst’ value is used here to identify the biological group most at risk, rather than averaging over all groups to avoid over-­emphasis on groups with more intensive monitoring). As reference, please consult the ETC/ICM Report 3/2019: Biodiversity in Europe's seas: https://www.eionet.europa.eu/etcs/etc-icm/products/biodiversity-in-europes-seas. The indicator BEAT+ Integrated Assessment Worst Case BQR has been used in the EEA report 17/2019 "Marine Messages II": https://www.eea.europa.eu/publications/marine-messages-2.