In October 2019 we chose 15 sites from the 2019 EVHOE survey for environmental DNA (eDNA) sampling. The French international EVHOE bottom trawl survey is carried out annually during autumn in the BoB to monitor demersal fish resources. At each site, we sampled seawater using Niskin bottles deployed with a circular rosette. There were nine bottles on the rosette, each of them able to hold ∼5 l of water. At each site, we first cleaned the circular rosette and bottles with freshwater, then lowered the rosette (with bottles open) to 5 m above the sea bottom, and finally closed the bottles remotely from the boat. The 45 l of sampled water was transferred to four disposable and sterilized plastic bags of 11.25 l each to perform the filtration on-board in a laboratory dedicated to the processing of eDNA samples. To speed up the filtration process, we used two identical filtration devices, each composed of an Athena® peristaltic pump (Proactive Environmental Products LLC, Bradenton, Florida, USA; nominal flow of 1.0 l min–1 ), a VigiDNA 0.20 μm filtration capsule (SPYGEN, le Bourget du Lac, France), and disposable sterile tubing. Each filtration device filtered the water contained in two plastic bags (22.5 l), which represent two replicates per sampling site. We followed a rigorous protocol to avoid contamination during fieldwork, using disposable gloves and single-use filtration equipment and plastic bags to process each water sample. At the end of each filtration, we emptied the water inside the capsule that we replaced by 80 ml of CL1 conservation buffer and stored the samples at room temperature following the specifications of the manufacturer (SPYGEN, Le Bourget du Lac, France). We processed the eDNA capsules at SPYGEN, following the protocol proposed by Polanco-Fernández et al., (2020). Half of the extracted DNA was processed by Sinsoma using newly developped ddPCR assays for European seabass (Dicentrachus labrax), European hake (Merluccius merluccius) and blackspot seabream (Pagellus bogaraveo).  The other half of the extracted DNA was analysed using metabarcoding with teleo primer. The raw metabarcoding data set is available at https://www.doi.org/10.16904/envidat.442 Bottom trawling using a GOV trawl was carried out before or after water sampling. The catch was sorted by species and catches in numbers and weight were recorded. No blackspot seabream individuals were caught.   Data content: * ddPCR/: contains the ddPCR counts and DNA concentrations for each sample and species. * SampleInfo/: contains the filter volume for each eDNA sample. * StationInfo/: contains metadata related to the data collected in the field for each filter. * Metabarcoding/: contains metabarcoding results for teleoprimer. * Trawldata/: contains catch data in numbers and weight (kg).      

As part of the marine water quality monitoring of the “Pertuis” and the “baie de l’Aiguillon” (France), commissioned by the OFB and carried out by setec énergie environnement, three monitoring stations were installed. Two of them were set up at the mouths of the Charente and Seudre rivers on February 6 and 27, 2019, respectively, while a third was deployed in the Bay of Aiguillon on March 24, 2021. The dataset presented here concerns the station installed in the Charente estuary. Measurements are organized into .csv files, with one file per year. Data is collected using a SAMBAT multiparameter probe, which records the following parameters: - Temperature (-5 to 35 °C) - Conductivity (0 to 10 mS/cm) - Pressure (0 to 10 m) - Turbidity (0 to 300 NTU) - Dissolved Oxygen (0 to 20 mg/L & 0 to 200 %) - Fluorescence (0 to 50 µg/l) - PH (0/14)

Data collected by the Spindrift 2 Sails of Change vessel during its attempt at the round-the-world sailing record, the Jules Verne Trophy. More information at https://spindrift-racing.com/fr/.

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification, contaminants and litter. The chosen parameters are relevant for the Marine Strategy Framework Directive (MSFD), in particular for descriptors 5, 8, 9 and 10. The dataset contains standardized, harmonized and validated data collections from beach litter (monitoring and other sources). Datasets concerning beach and seafloor litter data are loaded in a central database after a semi-automated validation phase. Once loaded, a data assessment is performed in order to check data consistency and potential errors are corrected thanks to a feedback loop with data originators. For beach litter, the harmonized datasets contain all unrestricted EMODnet Chemistry data on beach litter, including monitoring data, data from cleaning surveys and data from research. A relevant part of the monitoring data has been considered for assessment purposes by the European institutions and therefore is tagged as MSFD_monitoring. EMODnet beach litter data and databases are hosted and maintained by 'Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)' from Italy. Data are formatted following Guidelines and forms for gathering marine litter data, which can be found at: https://doi.org/10.6092/15c0d34c-a01a-4091-91ac-7c4f561ab508 The updated vocabularies of admitted values are available at: https://nodc.ogs.it/marinelitter/vocab The European harmonized dataset is provided as csv format in two files, one containing the survey data and one containing the survey metadata. The dataset is available through direct download or through ERDDAP.

The SOMLIT-Antioche observation station, located at 5 nautical miles from Chef de Baie harbor (La Rochelle) is part of the French monitoring network SOMLIT (https://www.somlit.fr/), accredited by the INSU-CNRS as a national Earth Science Observatory (Service National d’Observation : SNO), which comprises 12 observation stations distributed throughout France in coastal locations. It aims to detect long-term changes  of these ecosystems under both natural and anthropogenic forcings. SOMLIT is part of the national research infrastructure for coastal ocean observation ILICO (https://www.ir-ilico.fr/?PagePrincipale&lang=en). The SOMLIT-Antioche station (46.0842 °N, 1.30833 °W) is located in the north-eastern part of the Bay of Biscay, halfway between the islands of Ré and Oléron, at the centre of what is commonly known as the Pertuis Charentais area, which correspond to a semi-enclosed shallow basin and includes four islands (Ré, Oléron, Aix and Madame) and three Pertuis (i.e., detroit) (Breton, Antioche and Maumusson). This 40m-deep site, with muddy to sandy marine bottoms, is submitted to a macro-tidal regime and is largely open to the prevailing westerly swells. It remains under a dominant oceanic/neritic influence, even though its winter/spring hydrological context is influenced by the diluted plumes of the Charente, Gironde and Loire rivers, but not by those of too small estuaries (Lay, Seudre and Sèvre Niortaise). SOMLIT-Antioche hydrological monitoring has been carried out by the LIENSs/OASU laboratory on a fortnightly basis since June 2011. Surface water samples are collected  at high-tide during intermediate tides (70 ± 10 in SHOM units) on board the research  vessel ‘L’Estran’ owned by La Rochelle University. Samples are analyzed for more than 16 core parameters: temperature, salinity, dissolved oxygen, pH, ammonia, nitrates, nitrites, phosphates, silicates, suspended matter, particulate organic carbone, particulate organic nitrogen, chlorophyll, delta15N, delta13C; pico- and nano- plankton. Measurements are carried out in accordance with the ISO/IEC 17025:2017 standard. Simultaneous monitoring of the micro-phytoplankton community (since 2013, SNO PHYTOBS: https://www.phytobs.fr/en) and monitoring of prokaryotic communities (Bacteria and Archaea) are also carried out on a monthly basis. Since 2019, seasonal observations of benthic invertebrate communities (SNO BenthObs : https://www.benthobs.fr/) have also been carried out. This monitoring is complementary to that carried out at hydrological stations in the pre-existing REPHY and DCE networks, some of which are located near marine farming areas (oyster and mussel farms).

The dataset includes age- and length-based catch per unit effort data for commercial fish species collected by the French trawl survey EVHOE.

210Pb, 226Ra and 137Cs were measured by non-destructive gamma spectrometry on marine sediment cores, collected during RIKEAU 2002 cruise on board r/v Thalia, on the shelf of the Bay of Biscay

This folder contains two examples of PAGURE datasets, corresponding to three surveys: -CGFS conducted in 2018 in the English Channel (Northeast Atlantic) -EPIBENGOL conducted in 2019 in the Gulf of Lion (Western Mediterranean) -EVHOE conducted in 2020 in the Bay of Biscay and Celtic Shelf (Northeast Atlantic) Files include metadata for the sampling stations, annotation files. A readme tex file contains the links to the voyage metadata This folder is aimed at providing an example of documented underwater imagery dataset. These data are part of the data exchange conducted in the QuatreA collaboration between the French Research Institute for the Exploitation of the Sea (Ifremer), the Commonwealth Scientific and Industrial Research Organisation (CSIRO), and the University of Tasmania (UTAS).

Tracking data of 7 grey seals were obtained from the deployment of Fastloc GPS/GSM tags developed by the Sea Mammal Research Unit (UK). Full tag description is available at: http://www.smru.st-andrews.ac.uk/Instrumentation/GPSPhoneTag/. The tags include a wet-dry sensor from which haulout events are recorded, a pressure sensor providing detailed dive data, as well as a Fastloc GPS recording irregular locations when the seal is not underwater. Data is stored onboard and transmitted via the GSM network when the seal is in the reception range. The data provided here are the individual GPS locations of the seals fitted with these tags for an average duration of 135 days.