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NC, NETCDF

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  • This dataset provides a World Ocean Atlas of Argo inferred statistics. The primary data are exclusively Argo profiles. The statistics are done using the whole time range covered by the Argo data, starting in July 1997. The atlas is provided with a 0.25° resolution in the horizontal and 63 depths from 0 m to 2,000 m in the vertical. The statistics include means of Conservative Temperature (CT), Absolute Salinity, compensated density, compressiblity factor and vertical isopycnal displacement (VID); standard deviations of CT, VID and the squared Brunt Vaisala frequency; skewness and kurtosis of VID; and Eddy Available Potential Energy (EAPE). The compensated density is the product of the in-situ density times the compressibility factor. It generalizes the virtual density used in Roullet et al. (2014). The compressibility factor is defined so as to remove the dependency with pressure of the in-situ density. The compensated density is used in the computation of the VID and the EAPE.

  • A quantitative understanding of the integrated ocean heat content depends on our ability to determine how heat is distributed in the ocean and what are the associated coherent patterns. This dataset contains the results of the Maze et al., 2017 (Prog. Oce.) study demonstrating how this can be achieved using unsupervised classification of Argo temperature profiles. The dataset contains: - A netcdf file with classification~results (labels and probabilities) and coordinates (lat/lon/time) of 100,684 Argo temperature profiles in North Atlantic. - A netcdf file with a Profile Classification Model (PCM) that can be used to classify new temperature profiles from observations or numerical models. The classification method used is a Gaussian Mixture Model that decomposes the Probability Density Function of the dataset into a weighted sum of Gaussian modes. North Atlantic Argo temperature profiles between 0 and 1400m depth were interpolated onto a regular 5m grid, then compressed using Principal Component Analysis and finally classified using a Gaussian Mixture Model. To use the netcdf PCM file to classify new data, you can checkout our PCM Matlab and Python toolbox here: https://github.com/obidam/pcm

  • This data set provides a monthly time series of the upper limb of the Meridional Overturning Circulation (MOC) intensity at the A25 Greenland-Portugal OVIDE line from 1993 to 2015. The MOC was derived by combining AVISO altimetry with ISAS temperature and salinity data. The reader is referred to Mercier et al. (2015, Progress in Oceanography) for a full description of the method.

  • This dataset contains (1) outputs of Species Distribution Models (SDMs) for marine fish and (2) estimation of species richness using those outputs. SDMs use correlative algorithms to link presences of species to the environment recorded in place and time of their observation, calculate their environmental niche, estimate the geographical location suitable for them (habitat suitability) and in fine their geographical distribution. Here, we downloaded presences of marine fish from two open source databases, GBIF and OBIS and 13 environmental predictors known to be relevant in fish ecology (list below). We used the CEPHALOPOD pipeline, a framework allowing the user the compute a lot of species at the same time, with comparable methods and a verification of quality of inputs and outputs at every steps (Schickele et al., 2025). 3,642 fish made it to the final step and have the habitat suitability estimated for 12 month + annual mean, 10 bootstrap to quantify uncertainty and x algorithms. Those estimation are available in the “L2_marine_fish_*.nc” files, organized by water column position (bathydemersal, bathypelagic, benthopelagic, demersal, pelagic-neritic, pelagic-oceanic, reef-associated). We then used their annual mean to estimate their actual geographic distribution by applying (1) a bathymetric filtration and (2) a cutting procedure which removes isolated patches of high suitability (i.e., potential distribution) with no recorded presences (i.e., considered to be outside of the species dispersion range). Those geographic distribution were then stacked to estimate global species richness of every fish and each water column position.

  • Ensemble simulations of the ecosystem model Apecosm (https://apecosm.org) forced by the IPSL-CM6-LR climate model with the climate change scenario SSP5-8.5. The output files contain yearly mean biomass density for 3 communities (epipelagic, mesopelagic migratory and mesopelagic redidents) and 100 size classes (ranging from 0.12cm to 1.96m) The model grid file is also provided. Units are in J/m2 and can be converted in kg/m2 by dividing by 4e6. These outputs are associated with the "Assessing the time of emergence of marine ecosystems from global to local scales using IPSL-CM6A-LR/APECOSM climate-to-fish ensemble simulations" paper from the Earth's Future "Past and Future of Marine Ecosystems" Special Collection.

  • The Southern Ocean plays a fundamental role in regulating the global climate. This ocean also contains a rich and highly productive ecosystem, potentially vulnerable to climate change. Very large national and international efforts are directed towards the modeling of physical oceanographic processes to predict the response of the Southern Ocean to global climate change and the role played by the large-scale ocean climate processes. However, these modeling efforts are greatly limited by the lack of in situ measurements, especially at high latitudes and during winter months. The standard data that are needed to study ocean circulation are vertical profiles of temperature and salinity, from which we can deduce the density of seawater. These are collected with CTD (Conductivity-Temperature-Depth) sensors that are usually deployed on research vessels or, more recently, on autonomous Argo profilers. The use of conventional research vessels to collect these data is very expensive, and does not guarantee access to areas where sea ice is found at the surface of the ocean during the winter months. A recent alternative is the use of autonomous Argo floats. However, this technology is not easy to use in glaciated areas. In this context, the collection of hydrographic profiles from CTDs mounted on marine mammals is very advantageous. The choice of species, gender or age can be done to selectively obtain data in particularly under-sampled areas such as under the sea ice or on continental shelves. Among marine mammals, elephant seals are particularly interesting. Indeed, they have the particularity to continuously dive to great depths (590 ± 200 m, with maxima around 2000 m) for long durations (average length of a dive 25 ± 15 min, maximum 80 min). A Conductivity-Temperature-Depth Satellite Relay Data Logger (CTD-SRDLs) has been developed in the early 2000s to sample temperature and salinity vertical profiles during marine mammal dives (Boehme et al. 2009, Fedak 2013). The CTD-SRDL is attached to the seal on land, then it records hydrographic profiles during its foraging trips, sending the data by satellite ARGOS whenever the seal goes back to the surface.While the principle intent of seal instrumentation was to improve understanding of seal foraging strategies (Biuw et al., 2007), it has also provided as a by-product a viable and cost-effective method of sampling hydrographic properties in many regions of the Southern Ocean (Charrassin et al., 2008; Roquet et al., 2013).

  • This dataset contains OAC-P results from application to Argo data in the World Ocean : - the 2000-2015 climatology of OAC-P results mapped onto a 0.5x0.5 grid with mapping error estimates; - the 2000-2015 probability density function of the permanent pycnocline potential density referenced to the sea surface vs Brunt-Väisälä frequency squared.OAC-P is an "Objective Algorithm for the Characterization of the permanent Pycnocline" developed to characterize subtropical gyre stratification features with both observed and modeled potential density profiles. OAC-P estimates the following properties: - for the permanent pycnocline: depth, upper and lower thicknesses, Brunt-Väisälä frequency squared, potential density, temperature and salinity; - for the surface mode water overlying the permanent pycnocline: depth, Brunt-Väisälä frequency squared, potential density, temperature and salinity. Argo data were download from Coriolis Argo GDAC on February, 8th 2016. Only Argo data with QC=1, 2, 5 or 8 were used.

  • Argo is a global array of 3,000 free-drifting profiling floats that measures the temperature and salinity of the upper 2000 m of the ocean. This allows, for the first time, continuous monitoring of the temperature, salinity, and velocity of the upper ocean, with all data being relayed and made publicly available within hours after collection. The array provides 100,000 temperature/salinity profiles and velocity measurements per year distributed over the global oceans at an average of 3-degree spacing. Some floats provide additional bio-geo parameters such as oxygen or chlorophyll. All data collected by Argo floats are publically available in near real-time via the Global Data Assembly Centers (GDACs) in Brest (France) and Monterey (California) after an automated quality control (QC), and in scientifically quality controlled form, delayed mode data, via the GDACs within six months of collection. The BGC-Argo Sprof snapshot is a subset of the global Argo data snapshot.  It is created to ease BGC-Argo data usage.  The content is the same if you are to download the global Argo data snapshot, and then select all the BGC-Argo Sprof files.  Please use the same DOI and citation as the global Argo data snapshot.

  • This dataset is an aggregation of all availale in situ data from Coriolis and Copernicus in situ data centres, observed in the French DCSMM area. It contains 5167 NetCDF CF files from 1903 to 2017. Each file contains the observations of a specific platform (e.g. vessel, mooring site, sea level station). Observed parameters are temperature, salinity, pressure, oxygen, nitrate, chlorophyll (and other bio-geo-chemicals), current, wave, sea level, river flow.  

  • This delayed mode product designed for reanalysis purposes integrates the best available version of in situ data for ocean surface currents and current vertical profiles. It concerns three delayed time datasets dedicated to near-surface currents measurements coming from three platforms (Lagrangian surface drifters, High Frequency radars and Argo floats) and velocity profiles within the water column coming from the Acoustic Doppler Current Profiler (ADCP, vessel mounted only). The latest version of Copernicus surface and sub-surface water velocity product is also distributed from Copernicus Marine catalogue.