Habitats and biotopes
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160 whole genomes sequences obtained from 160 individual fish samples representing about 100 different species present in Gulf of Lion, and bay of Biscay.
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This study aims to compare different metabarcoding sequences of commercially fished shrimps collected by tree counties on the North Brazil Shelf Large Marine Ecosystem
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The eleven collected wild strains of T. lutea were compared phenotypically, in particular with regard to their pigment and lipid profiles. The genome of each T. lutea strain was also sequenced to investigate the genetic structure and genome organisation of this species. Collected data were summarized in a genome browser to provide easy-to-use support for the scientific community (https://genomes-catalog.ifremer.fr). This provides an important resource- to understand, exploit and predict the biodiversity of this species.
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Raw reads for the assembly of Gambusia holbrooki genome.
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Here, our study aimed to first assess the influence of plastic on the bacterial community belonging to water, plastic and the microbiome of the giant clam and on the organism's physiology of this putative sentinel species. Our second objective was to identify bacteria whose abundance varies significantly with plastic concentration. Overall, this study will fill the gap towards a better understanding of the impact of plastic pollution on bacterial community assemblages in both inert and living environments.
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Whole genome pooled sequencing of individuals from 4 populations and 3 different color phenotype in order to uncover the genetic variants linked to color expression in the pearl oyster P. margaritifera.
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The present data set concerne metabarcoding raw reads produced using 4 different PCR targeting polymerase or capside coding region of the genoyupe I and II of norovirus. Test samples of norovirus with serial dilutions in pure water and after a bio-accumulation in oysters. Sequencing was made after VirCapSeq-VERT approach.
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This dataset concerns sequences from the metabarcoding analysis (bacteria & archaea) of 4 hydrothermal sites from the TAG field (2 inactive sites & 2 weakly active sites) collected during the HERMINE2 oceanographic campaign.
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This dataset consists of metatranscriptomic sequencing reads corresponding to coastal micro-eukaryote communities sampled in Western Europe in 2018 and 2019.
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Develop parentage assignment panels using genetic fingerprinting of pearl oysters for use in commercial hatcheries and research to manage pedigrees in order to limit the risks of loss of genetic variability and increased inbreeding of commercial lines.
Catalogue PIGMA