'''Short description:''' Le modèle biogéochimique ECO-MARS3D sur la façade Manche Atlantique (PREVIMER_B1-ECOMARS3D-MANGA4000) est un modèle 3D de résolution spatiale 4km qui fournit les concentrations de nutriments et de plancton toutes les heures sur 30 niveaux (fenêtre de prévision à 4 jours). '''Paramètres calculés :''' Les paramètres calculés sont les suivants : * SAL : sea_water_salinity * TEMP : sea_water_temperature * suspended_inorganic_particulate_matter : mass_concentration_of_suspended_matter_in_sea_water * nanopicoplankton_nitrogen : mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_water * diatom_nitrogen : mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_water * dinoflagellate_nitrogen : mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_water * microzooplankton_nitrogen : mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_water * mesozooplankton_nitrogen : mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_water * colonial_phaeocystis_nitrogen : mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_water * phaeocystis_mucus : concentration_of_phaeocystis_mucus_expressed_as_mass_in_sea_water * ammonium : mole_concentration_of_ammonium_in_sea_water * nitrate : mole_concentration_of_nitrate_in_sea_water * dissolved_silicate : mole_concentration_of_silicate_in_sea_water * dissolved_phosphate : mole_concentration_of_phosphate_in_sea_water * dissolved_oxygen : dissolved_oxygen_in_water_column * cumulative_nanoflagellate_carbon_production : cumulative_nanoflagellate_production_expressed_as_carbon_in_sea_water * cumulative_diatom_carbon_production : cumulative_diatom_production_expressed_as_carbon_in_sea_water * cumulative_dinoflagellate_carbon_production : cumulative_dinoflagellate_production_expressed_as_carbon_in_sea_water * cumulative_phaeocystis_carbon_production : cumulative_phaeocystis_production_expressed_as_carbon_in_sea_water * organic_nitrogen_benth : mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthos Les paramètres diagnostiques calculés sont les suivants : * XE : sea_surface_height_above_geoid * maximum_de_diat : maximum_diatom_mass_concentration_in_sea_water * maximum_de_dino : maximum_dinoflagellate_mass_concentration_in_sea_water * maximum_de_nano : maximum_nanoflagellate_mass_concentration_in_sea_water * grad_vert_salinite : maximum_vertical_gradient_of_sea_water_salinity * grad_vert_temp : maximum_vertical_gradient_of_sea_water_temperature * extinction_lumineuse : light_extinction_in_sea_water * prod_diat : cumulated_production_of_diatoms_in_sea_water_column_expressed_in_carbon * prod_dino : cumulated_production_of_dinoflagellates_in_sea_water_column_expressed_in_carbon * prod_nano : cumulated_production_of_nanoflagellates_in_sea_water_column_expressed_in_carbon * chlorophylle_a : chlorophyll_mass_concentration_in_sea_water * prod_cumul_chloro : cumulated_total_production_in_sea_water_column_expressed_in_carbon * maximum_de_phaeocystis : maximum_phaeocystis_mass_concentration_in_sea_water * prod_phaeocystis : cumulated_production_of_phaeocystis_in_sea_water_column_expressed_in_carbon * oxygen_saturation : oxygen_saturation * ammoniumGIRON_tracer_sign: mole_concentration_of_ammonium_in_sea_waterGIRON_tracer_sign * ammoniumGIRON_tracer_age: mole_concentration_of_ammonium_in_sea_waterGIRON_tracer_age * nitrateGIRON_tracer_sign: mole_concentration_of_nitrate_in_sea_waterGIRON_tracer_sign * nitrateGIRON_tracer_age: mole_concentration_of_nitrate_in_sea_waterGIRON_tracer_age * nanopicoplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * nanopicoplankton_nitrogenGIRON_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * diatom_nitrogenGIRON_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * diatom_nitrogenGIRON_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * dinoflagellate_nitrogenGIRON_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * dinoflagellate_nitrogenGIRON_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * microzooplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * microzooplankton_nitrogenGIRON_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * mesozooplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * mesozooplankton_nitrogenGIRON_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * detrital_nitrogenGIRON_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * detrital_nitrogenGIRON_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * colonial_phaeocystis_nitrogenGIRON_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * colonial_phaeocystis_nitrogenGIRON_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * phaeocystis_cells_nitrogenGIRON_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * phaeocystis_cells_nitrogenGIRON_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * organic_nitrogen_benthGIRON_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosGIRON_tracer_sign * organic_nitrogen_benthGIRON_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosGIRON_tracer_age * phytoplankton_sign_N_GIRON: nitrogen_fraction_in_phytoplankton_from_source_GIRON * phytoplankton_age_N_GIRON: age_of_nitrogen_fraction_in_phytoplankton_from_source_GIRON * ammoniumLOIRE_tracer_sign: mole_concentration_of_ammonium_in_sea_waterLOIRE_tracer_sign * ammoniumLOIRE_tracer_age: mole_concentration_of_ammonium_in_sea_waterLOIRE_tracer_age * nitrateLOIRE_tracer_sign: mole_concentration_of_nitrate_in_sea_waterLOIRE_tracer_sign * nitrateLOIRE_tracer_age: mole_concentration_of_nitrate_in_sea_waterLOIRE_tracer_age * nanopicoplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * nanopicoplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * diatom_nitrogenLOIRE_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * diatom_nitrogenLOIRE_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * dinoflagellate_nitrogenLOIRE_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * dinoflagellate_nitrogenLOIRE_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * microzooplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * microzooplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * mesozooplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * mesozooplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * detrital_nitrogenLOIRE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * detrital_nitrogenLOIRE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * colonial_phaeocystis_nitrogenLOIRE_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * colonial_phaeocystis_nitrogenLOIRE_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * phaeocystis_cells_nitrogenLOIRE_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * phaeocystis_cells_nitrogenLOIRE_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * organic_nitrogen_benthLOIRE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosLOIRE_tracer_sign * organic_nitrogen_benthLOIRE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosLOIRE_tracer_age * phytoplankton_sign_N_LOIRE: nitrogen_fraction_in_phytoplankton_from_source_LOIRE * phytoplankton_age_N_LOIRE: age_of_nitrogen_fraction_in_phytoplankton_from_source_LOIRE * ammoniumSEINE_tracer_sign: mole_concentration_of_ammonium_in_sea_waterSEINE_tracer_sign * ammoniumSEINE_tracer_age: mole_concentration_of_ammonium_in_sea_waterSEINE_tracer_age * nitrateSEINE_tracer_sign: mole_concentration_of_nitrate_in_sea_waterSEINE_tracer_sign * nitrateSEINE_tracer_age: mole_concentration_of_nitrate_in_sea_waterSEINE_tracer_age * nanopicoplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * nanopicoplankton_nitrogenSEINE_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * diatom_nitrogenSEINE_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * diatom_nitrogenSEINE_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * dinoflagellate_nitrogenSEINE_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * dinoflagellate_nitrogenSEINE_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * microzooplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * microzooplankton_nitrogenSEINE_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * mesozooplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * mesozooplankton_nitrogenSEINE_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * detrital_nitrogenSEINE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * detrital_nitrogenSEINE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * colonial_phaeocystis_nitrogenSEINE_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * colonial_phaeocystis_nitrogenSEINE_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * phaeocystis_cells_nitrogenSEINE_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * phaeocystis_cells_nitrogenSEINE_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * organic_nitrogen_benthSEINE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosSEINE_tracer_sign * organic_nitrogen_benthSEINE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosSEINE_tracer_age * phytoplankton_sign_N_SEINE: nitrogen_fraction_in_phytoplankton_from_source_SEINE * phytoplankton_age_N_SEINE: age_of_nitrogen_fraction_in_phytoplankton_from_source_SEINE

Temporal series (annual mean values) and Long Term Average (LTA) of sediment load for each river mouth where in situ data is available. Different sources can be mixed if any.

This product displays the stations where anthracene has been measured and the values present in EMODnet Chemistry infrastructure are always below the limit of detection or quantification (LOD/LOQ), i.e quality values found in EMODnet validated dataset can be equal to 6 or Q. It is necessary to take into account that LOD/LOQ can change with time. These products aggregate data by station, producing only one final value for each station (above, below or above/below). EMODnet Chemistry has included the gathering of contaminants data since the beginning of the project in 2009. For the maps for EMODnet Chemistry Phase III, it was requested to plot data per matrix (water,sediment, biota), per biological entity and per chemical substance. The series of relevant map products have been developed according to the criteria D8C1 of the MSFD Directive, specifically focusing on the requirements under the new Commission Decision 2017/848 (17th May 2017). The Commission Decision points to relevant threshold values that are specified in the WFD, as well as relating how these contaminants should be expressed (units and matrix etc.) through the related Directives i.e. Priority substances for Water. EU EQS Directive does not fix any threshold values in sediments. On the contrary Regional Sea Conventions provide some of them, and these values have been taken into account for the development of the visualization products. To produce the maps the following process has been followed: 1. Data collection through SeaDataNet standards (CDI+ODV) 2. Harvesting, harmonization, validation and P01 code decomposition of data 3. SQL query on data sets from point 2 4. Production of map with each point representing at least one record that match the criteria The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols. Preliminary processing were necessary to harmonize all the data : • For water: contaminants in the dissolved phase; • For sediment: data on total sediment (regardless of size class) or size class < 2000 μm • For biota: contaminant data will focus on molluscs, on fish (only in the muscle), and on crustaceans • Exclusion of data values equal to 0

'''Short description: ''' For the Global Ocean- The In Situ Thematic Assembly Centre (INS TAC) integrates near real-time in situ in situ observation data. These data are collected from main global networks (Argo, GOSUD, OceanSITES, GTS) completed by European data provided by EUROGOOS regional systems and national data providers assembled by the In Situ TAC regional components. The data are quality controlled using automated procedures and assessed using statistical analysis residuals. It is updated continuously and provides observations with 24-48 hours from acquisition in average. '''Detailed description:''' Ocean circulation models need information on the interior of the ocean to be able to generate accurate forecast. This information is only available from in-situ measurements. However this information is acquired all around the world and not easily accessible to operational users. Therefore, In Situ Thematic Assembly Centre (INS-TAC), by connecting to a lot of international networks, collects, controls and disseminates the relevant in-situ data to operational users and research community. It also integrates the in situ data collected by the regional components of the INS-TAC. The INS-TAC portal is updated continuously with the observations which have never been disseminated in previous release or have been updated. The latest month of data is available in the "latest" directory, while the data are then accumulated month by month on the same portal. '''Processing information:''' The product is the homogeneous aggregation of observation data coming from various in-situ sources, quality controlled according to standardized procedures that have been defined in collaboration with EUROGOOS, SeaDataNet and international programs such as Argo, GOSUD or OceanSITES. Duplicate observations have been removed. The data are coming from the following platforms: # Profile data from Argo profiling floats including Euro-Argo, CTD and XBT from research vessels or vessels of opportunity, mooring from OceanSITES including EuroSites and National systems, profiles from Gliders including EGO , from sea mammals as well as profile data from GTS (Global Telecommunication System in BUOY, BATHY, and TESAC format). MEDS / DFO (Canada) provides an integrated access to the data circulating on the GTS and Meteo-France a single access point to the GTS, # along the track data from thermosalinograph European Ferrybox vessels and drifting buoys directly submitted or through the GTS with the contribution of MEDS/DFO (Canada) . # Timeseries from fixed stations mainly in European seas # sea level from EUROGOOS ROOSesThe reference level of the measurements is immersion (in meters) or pressure (in decibars). The data are available in the same format on a unique portal develop jointly with EurOGOOS for the European Seas. '''Quality/accuracy/calibration information:''' On each profile or underway data individual automatic tests (peak detection, ....) and statistical tests (comparison with climatology and neighbouring measurements) are performed. On doubtful data visual control by ocean experts is performed. As a result of these tests, quality control flags are assigned to each measurement and included in the product. The data format and Quality Control procedures for Temperature, Salinity, Current, Sea Level ,Wave and some biogeochemical parameters are documented at CMEMS INS-TAC Documentation '''Suitability, Expected type of users / uses:''' The product is designed for assimilation into operational models operated by ocean forecasting centres or for scientists interested in near real time products. These users need data aggregated and quality controlled in a reliable and documented manner. As the different releases of the product are not archived by INS TAC, users have to manage their own in-situ data archive if they need it. Only the best copy of the data is archived at the INS TAC.

In order to better characterize the population structure of common dolphins (Delphinus delphis) in the Bay of Biscay, a single digest RADseq (SbfI enzyme) protocol was used to obtain paired-end, 150bp NGS sequences on the Illumina NovaSeq 6000 sequencing platform. D. delphis samples from the Western North Atlantic, and samples from three other delphinid species were included as outgroups.