'''Short description:''' Le modèle biogéochimique ECO-MARS3D sur la façade Manche Atlantique (PREVIMER_B1-ECOMARS3D-MANGA4000) est un modèle 3D de résolution spatiale 4km qui fournit les concentrations de nutriments et de plancton toutes les heures sur 30 niveaux (fenêtre de prévision à 4 jours). '''Paramètres calculés :''' Les paramètres calculés sont les suivants : * SAL : sea_water_salinity * TEMP : sea_water_temperature * suspended_inorganic_particulate_matter : mass_concentration_of_suspended_matter_in_sea_water * nanopicoplankton_nitrogen : mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_water * diatom_nitrogen : mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_water * dinoflagellate_nitrogen : mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_water * microzooplankton_nitrogen : mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_water * mesozooplankton_nitrogen : mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_water * colonial_phaeocystis_nitrogen : mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_water * phaeocystis_mucus : concentration_of_phaeocystis_mucus_expressed_as_mass_in_sea_water * ammonium : mole_concentration_of_ammonium_in_sea_water * nitrate : mole_concentration_of_nitrate_in_sea_water * dissolved_silicate : mole_concentration_of_silicate_in_sea_water * dissolved_phosphate : mole_concentration_of_phosphate_in_sea_water * dissolved_oxygen : dissolved_oxygen_in_water_column * cumulative_nanoflagellate_carbon_production : cumulative_nanoflagellate_production_expressed_as_carbon_in_sea_water * cumulative_diatom_carbon_production : cumulative_diatom_production_expressed_as_carbon_in_sea_water * cumulative_dinoflagellate_carbon_production : cumulative_dinoflagellate_production_expressed_as_carbon_in_sea_water * cumulative_phaeocystis_carbon_production : cumulative_phaeocystis_production_expressed_as_carbon_in_sea_water * organic_nitrogen_benth : mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthos Les paramètres diagnostiques calculés sont les suivants : * XE : sea_surface_height_above_geoid * maximum_de_diat : maximum_diatom_mass_concentration_in_sea_water * maximum_de_dino : maximum_dinoflagellate_mass_concentration_in_sea_water * maximum_de_nano : maximum_nanoflagellate_mass_concentration_in_sea_water * grad_vert_salinite : maximum_vertical_gradient_of_sea_water_salinity * grad_vert_temp : maximum_vertical_gradient_of_sea_water_temperature * extinction_lumineuse : light_extinction_in_sea_water * prod_diat : cumulated_production_of_diatoms_in_sea_water_column_expressed_in_carbon * prod_dino : cumulated_production_of_dinoflagellates_in_sea_water_column_expressed_in_carbon * prod_nano : cumulated_production_of_nanoflagellates_in_sea_water_column_expressed_in_carbon * chlorophylle_a : chlorophyll_mass_concentration_in_sea_water * prod_cumul_chloro : cumulated_total_production_in_sea_water_column_expressed_in_carbon * maximum_de_phaeocystis : maximum_phaeocystis_mass_concentration_in_sea_water * prod_phaeocystis : cumulated_production_of_phaeocystis_in_sea_water_column_expressed_in_carbon * oxygen_saturation : oxygen_saturation * ammoniumGIRON_tracer_sign: mole_concentration_of_ammonium_in_sea_waterGIRON_tracer_sign * ammoniumGIRON_tracer_age: mole_concentration_of_ammonium_in_sea_waterGIRON_tracer_age * nitrateGIRON_tracer_sign: mole_concentration_of_nitrate_in_sea_waterGIRON_tracer_sign * nitrateGIRON_tracer_age: mole_concentration_of_nitrate_in_sea_waterGIRON_tracer_age * nanopicoplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * nanopicoplankton_nitrogenGIRON_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * diatom_nitrogenGIRON_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * diatom_nitrogenGIRON_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * dinoflagellate_nitrogenGIRON_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * dinoflagellate_nitrogenGIRON_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * microzooplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * microzooplankton_nitrogenGIRON_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * mesozooplankton_nitrogenGIRON_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * mesozooplankton_nitrogenGIRON_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * detrital_nitrogenGIRON_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * detrital_nitrogenGIRON_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * colonial_phaeocystis_nitrogenGIRON_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * colonial_phaeocystis_nitrogenGIRON_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * phaeocystis_cells_nitrogenGIRON_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterGIRON_tracer_sign * phaeocystis_cells_nitrogenGIRON_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterGIRON_tracer_age * organic_nitrogen_benthGIRON_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosGIRON_tracer_sign * organic_nitrogen_benthGIRON_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosGIRON_tracer_age * phytoplankton_sign_N_GIRON: nitrogen_fraction_in_phytoplankton_from_source_GIRON * phytoplankton_age_N_GIRON: age_of_nitrogen_fraction_in_phytoplankton_from_source_GIRON * ammoniumLOIRE_tracer_sign: mole_concentration_of_ammonium_in_sea_waterLOIRE_tracer_sign * ammoniumLOIRE_tracer_age: mole_concentration_of_ammonium_in_sea_waterLOIRE_tracer_age * nitrateLOIRE_tracer_sign: mole_concentration_of_nitrate_in_sea_waterLOIRE_tracer_sign * nitrateLOIRE_tracer_age: mole_concentration_of_nitrate_in_sea_waterLOIRE_tracer_age * nanopicoplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * nanopicoplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * diatom_nitrogenLOIRE_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * diatom_nitrogenLOIRE_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * dinoflagellate_nitrogenLOIRE_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * dinoflagellate_nitrogenLOIRE_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * microzooplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * microzooplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * mesozooplankton_nitrogenLOIRE_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * mesozooplankton_nitrogenLOIRE_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * detrital_nitrogenLOIRE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * detrital_nitrogenLOIRE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * colonial_phaeocystis_nitrogenLOIRE_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * colonial_phaeocystis_nitrogenLOIRE_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * phaeocystis_cells_nitrogenLOIRE_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_sign * phaeocystis_cells_nitrogenLOIRE_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterLOIRE_tracer_age * organic_nitrogen_benthLOIRE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosLOIRE_tracer_sign * organic_nitrogen_benthLOIRE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosLOIRE_tracer_age * phytoplankton_sign_N_LOIRE: nitrogen_fraction_in_phytoplankton_from_source_LOIRE * phytoplankton_age_N_LOIRE: age_of_nitrogen_fraction_in_phytoplankton_from_source_LOIRE * ammoniumSEINE_tracer_sign: mole_concentration_of_ammonium_in_sea_waterSEINE_tracer_sign * ammoniumSEINE_tracer_age: mole_concentration_of_ammonium_in_sea_waterSEINE_tracer_age * nitrateSEINE_tracer_sign: mole_concentration_of_nitrate_in_sea_waterSEINE_tracer_sign * nitrateSEINE_tracer_age: mole_concentration_of_nitrate_in_sea_waterSEINE_tracer_age * nanopicoplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * nanopicoplankton_nitrogenSEINE_tracer_age: mole_concentration_of_nanoplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * diatom_nitrogenSEINE_tracer_sign: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * diatom_nitrogenSEINE_tracer_age: mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * dinoflagellate_nitrogenSEINE_tracer_sign: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * dinoflagellate_nitrogenSEINE_tracer_age: mole_concentration_of_dinoflagellates_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * microzooplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * microzooplankton_nitrogenSEINE_tracer_age: mole_concentration_of_microzooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * mesozooplankton_nitrogenSEINE_tracer_sign: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * mesozooplankton_nitrogenSEINE_tracer_age: mole_concentration_of_mesozooplankton_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * detrital_nitrogenSEINE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * detrital_nitrogenSEINE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * colonial_phaeocystis_nitrogenSEINE_tracer_sign: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * colonial_phaeocystis_nitrogenSEINE_tracer_age: mole_concentration_of_colonial_phaeocystis_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * phaeocystis_cells_nitrogenSEINE_tracer_sign: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterSEINE_tracer_sign * phaeocystis_cells_nitrogenSEINE_tracer_age: mole_concentration_of_phaeocystis_cells_expressed_as_nitrogen_in_sea_waterSEINE_tracer_age * organic_nitrogen_benthSEINE_tracer_sign: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosSEINE_tracer_sign * organic_nitrogen_benthSEINE_tracer_age: mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_benthosSEINE_tracer_age * phytoplankton_sign_N_SEINE: nitrogen_fraction_in_phytoplankton_from_source_SEINE * phytoplankton_age_N_SEINE: age_of_nitrogen_fraction_in_phytoplankton_from_source_SEINE

Moving 10-years analysis of dissolved_oxygen_concentration at Mediterranean Sea for each season : - winter (January-March), - spring (April-June), - summer (July-September), - autumn (October-December). Every year of the time dimension corresponds to the 10-year centered average of each season. Decades span from 1971-1980 until 2006-2015. Observational data span from 1911 to 2015. Depth range (IODE standard depths):-3000.0, -2500.0, -2000.0, -1750.0, -1500.0, -1400.0, -1300.0, -1200.0, -1100.0, -1000.0, -900.0, -800.0, -700.0, -600.0, -500.0, -400.0, -300.0, -250.0, -200.0, -150.0, -125.0, -100.0, -75.0, -50.0, -30.0, -20.0, -10.0, -5.0, -0.0. Data Sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Description of DIVA analysis: Geostatistical data analysis by DIVA (Data-Interpolating Variational Analysis) tool. Profiles were interpolated at standard depths using weighted parabolic interpolation algorithm (Reiniger and Ross, 1968). GEBCO 1min topography is used for the contouring preparation. Analyzed filed masked using relative error threshold 0.3 and 0.5. DIVA settings: A constant value for signal-to-noise ratio was used equal to 1. Correlation length was optimized and filtered vertically and a seasonally-averaged profile was used. Logarithmic transformation applied to the data prior to the analysis. Background field: the data mean value is subtracted from the data. Detrending of data: no. Advection constraint applied: no. Originators of Italian data sets-List of contributors: o Brunetti Fabio (OGS) o Cardin Vanessa, Bensi Manuel doi:10.6092/36728450-4296-4e6a-967d-d5b6da55f306 o Cardin Vanessa, Bensi Manuel, Ursella Laura, Siena Giuseppe doi:10.6092/f8e6d18e-f877-4aa5-a983-a03b06ccb987 o Cataletto Bruno (OGS) o Cinzia Comici Cinzia (OGS) o Civitarese Giuseppe (OGS) o DeVittor Cinzia (OGS) o Giani Michele (OGS) o Kovacevic Vedrana (OGS) o Mosetti Renzo (OGS) o Solidoro C.,Beran A.,Cataletto B.,Celussi M.,Cibic T.,Comici C.,Del Negro P.,De Vittor C.,Minocci M.,Monti M.,Fabbro C.,Falconi C.,Franzo A.,Libralato S.,Lipizer M.,Negussanti J.S.,Russel H.,Valli G., doi:10.6092/e5518899-b914-43b0-8139-023718aa63f5 o Celio Massimo (ARPA FVG) o Malaguti Antonella (ENEA) o Fonda Umani Serena (UNITS) o Bignami Francesco (ISAC/CNR) o Boldrini Alfredo (ISMAR/CNR) o Marini Mauro (ISMAR/CNR) o Miserocchi Stefano (ISMAR/CNR) o Zaccone Renata (IAMC/CNR) o Lavezza, R., Dubroca, L. F. C., Ludicone, D., Kress, N., Herut, B., Civitarese, G., Cruzado, A., Lefèvre, D., Souvermezoglou, E., Yilmaz, A., Tugrul, S., and Ribera d'Alcala, M.: Compilation of quality controlled nutrient profiles from the Mediterranean Sea, doi:10.1594/PANGAEA.771907, 2011. Units: umol/l

An R Package that provides supporting functions for conducting Integrated Ecosystem Assessments (IEA), developed in the framework of Mission Atlantic. The package includes methods for data exploration and assessment of the current ecosystem status. Forked repository in Mission Atlantic. For latest version, check the original repository.

ROCCH, the French Chemical Contaminant Monitoring Network, regularly provides data for assessing the chemical quality of French coastal waters. Concentrations of trace metals and organic compounds are measured in integrative matrices (bivalves and sediments). Surface sediment samples are collected from 200 to 250 monitoring stations in the English Channel, the Bay of Biscay and Mediterranean lagoons every six years. Results concerning approximately 140 historical and emerging chemical substances (metals, PAHs, PCBs, PBDEs, PFAS …) are submitted to international databases of the Regional Sea Convention (OSPAR for the North East Atlantic and the Barcelona Convention for the Mediterranean) and disseminated to public stakeholders. During the ROCCHSED campaign in spring 2022, three sediment cores, each forty to fifty centimetres long, were collected from three different sites in the Bay of Biscay. Horizons of one to two centimetres in length were dated, sieved and freeze-dried for chemical analysis. The concentrations of metals, PAHs and PCBs were determined in horizons aged from over 150 years to the present in order to define the reference concentration of natural levels and describe the temporal profile of contamination.

Moving 6-year analysis of Water_body_silicate in the Mediterranean Sea for each season: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Every year of the time dimension corresponds to the 6-year centered average of the season. 6-years periods span from 1965-1970 until 2014-2019. Observational data span from 1960 to 2019. Depth range (IODE standard depths): 1500.0, 1400.0, 1300.0, 1200.0, -1100.0, -1000.0, -900.0, -800.0, -700.0, -600.0, -500.0, -400.0, -300.0, -250.0, -200.0, -150.0, -125.0, -100.0, -75.0, -50.0, -30.0, -20.0, -10.0, -5.0, -0.0. Data Sources: observational data from SeaDataNet/EMODnet Chemistry Data Network. Description of DIVA analysis: Geostatistical data analysis by DIVA (Data-Interpolating Variational Analysis) tool. Profiles were interpolated at standard depths using weighted parabolic interpolation algorithm (Reiniger and Ross, 1968). GEBCO 1min topography is used for the contouring preparation. Analysed filed masked using relative error threshold 0.3 and 0.5. DIVA settings: A constant value for signal-to-noise ratio was used equal to 1. Correlation length was optimized and filtered vertically and a seasonally-averaged profile was used. 'log(data)-exp(analysis' transformation applied to the data prior to the analysis. Background field: the data mean value is subtracted from the data. Detrending of data: no. Advection constraint applied: no. Units: umol/l. The entire set of related maps can be found in the viewing service: http://ec.oceanbrowser.net/emodnet/ . Originators of Italian data sets-List of contributors: - Brunetti Fabio (OGS) - Cardin Vanessa, Bensi Manuel doi:10.6092/36728450-4296-4e6a-967d-d5b6da55f306 - Cardin Vanessa, Bensi Manuel, Ursella Laura, Siena Giuseppe doi:10.6092/f8e6d18e-f877-4aa5-a983-a03b06ccb987 - Cataletto Bruno (OGS) - Cinzia Comici Cinzia (OGS) - Civitarese Giuseppe (OGS) - DeVittor Cinzia (OGS) - Giani Michele (OGS) - Kovacevic Vedrana (OGS) - Mosetti Renzo (OGS) - Solidoro C.,Beran A.,Cataletto B.,Celussi M.,Cibic T.,Comici C.,Del Negro P.,De Vittor C.,Minocci M.,Monti M.,Fabbro C.,Falconi C.,Franzo A.,Libralato S.,Lipizer M.,Negussanti J.S.,Russel H.,Valli G., doi:10.6092/e5518899-b914-43b0-8139-023718aa63f5 - Celio Massimo (ARPA FVG) - Malaguti Antonella (ENEA) - Fonda Umani Serena (UNITS) - Bignami Francesco (ISAC/CNR) - Boldrini Alfredo (ISMAR/CNR) - Marini Mauro (ISMAR/CNR) - Miserocchi Stefano (ISMAR/CNR) - Zaccone Renata (IAMC/CNR) - Lavezza, R., Dubroca, L. F. C., Ludicone, D., Kress, N., Herut, B., Civitarese, G., Cruzado, A., Lefèvre, D., Souvermezoglou, E., Yilmaz, A., Tugrul, S., and Ribera d'Alcala, M.: Compilation of quality controlled nutrient profiles from the Mediterranean Sea, doi:10.1594/PANGAEA.771907, 2011.