Cetacean NGS sequences from eDNA samples (D-loop)
In order to better characterize the genetic diversity of Cetaceans and especially the common Dolphin from the Bay of Biscay, sequences from the variable mitochondrial control region were obtained from water samples acquired close to groups of dolphins.
Simple
- Date (Creation)
- 2022-11-02
- Date (Publication)
- 2025-01-15
- Identifier
- FR-330-715-368-00032-delmoges_dolphin_D-LOOP
- Credit
- Marbec / Laboratoire Evolution et Génétique des Populations - Projet DELMOGES
Author
IFREMER
-
Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5
,
Montpellier
,
France
Author
IFREMER
-
Cornette Florence
Station de Sète - Avenue Jean Monnet - CS 30171 - 34203 Sète Cedex
,
Sete
,
France
04 99 57 32 84
Author
IFREMER
-
Reisser Celine
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5
,
Montpellier
,
France
Author
IFREMER
-
Arnaud-Haond Sophie
04 99 57 32 95
Station de Sète - Avenue Jean Monnet - CS 30171 - 34203 Sète Cedex
,
Sete
,
France
04 99 57 32 61
04 99 57 32 95
Author
IFREMER
-
Noel Cyril
Centre Bretagne - ZI de la Pointe du Diable - CS 10070 - 29280 Plouzané
,
Brest
,
France
02 98 22 43 34
- GEMET - INSPIRE themes, version 1.0
-
- Habitats and biotopes
- Thèmes Sextant
-
- /Biological Environment/Bioinformatics
- Use limitation
- CC-BY (Creative Commons - Attribution)
- Access constraints
- Copyright
- Use constraints
- Other restrictions
- Spatial representation type
- Grid
- Metadata language
- English
- Character set
- UTF8
- Topic category
-
- Oceans
N
S
E
W
- Begin date
- 2022-10-01
- End date
- 2022-06-30
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
- Distribution format
-
-
(
)
-
(
)
- OnLine resource
- /home/ref-bioinfo-extranet/ifremer/marbec/delmoges-dolphin ( NETWORK:LINK )
- OnLine resource
- Digital Object Identifier (DOI) ( WWW:LINK-1.0-http--metadata-URL )
- Hierarchy level
- Dataset
- Statement
- A total of 56 Waterra capsules were used to sample water close to groups of dolphins in the Bay of Biscay in June 2022 (21 capsules) and May 2023 (35 capsules). DNA was extracted and libraries were construted for the control region (d-loop). After purification, these samples were submitted to NGS sequencing. The sequences of the 8 PCR replicates were merged.
- File identifier
- 9087ff34-cbf1-417a-bf50-7dbb76a2d08d XML
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2024-09-25T07:19:16.042181Z
- Metadata standard name
- ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
- 1.0
Point of contact
IFREMER
-
Lapegue Sylvie
Université de Montpellier - Campus Triolet - 2 Place E. Bataillon - CC080 (IHPE) - 34095 Montpellier Cedex 5
,
Montpellier
,
France
Overviews
Spatial extent
N
S
E
W
Provided by
Associated resources
Not available