Whole genome pooled sequencing of individuals from 4 populations and 3 different color phenotype in order to uncover the genetic variants linked to color expression in the pearl oyster P. margaritifera.

'''DEFINITION''' The regional annual chlorophyll anomaly is computed by subtracting a reference climatology (1997-2014) from the annual chlorophyll mean, on a pixel-by-pixel basis and in log10 space. Both the annual mean and the climatology are computed employing the regional products as distributed by CMEMS, derived by application of the regional chlorophyll algorithms over remote sensing reflectances (Rrs) produced by the Plymouth Marine Laboratory (PML) using the ESA Ocean Colour Climate Change Initiative processor (ESA OC-CCI, Sathyendranath et al., 2018a). '''CONTEXT''' Phytoplankton and chlorophyll concentration as their proxy respond rapidly to changes in their physical environment. In the Mediterranean Sea, these changes are seasonal and are mostly determined by light and nutrient availability (Gregg and Rousseaux, 2014). By comparing annual mean values to the climatology, we effectively remove the seasonal signal at each grid point, while retaining information on peculiar events during the year. In particular, chlorophyll anomalies in the Mediterranean Sea can then be correlated with the North Atlantic Oscillation (NAO) and El Niño Southern Oscillation (ENSO) (Basterretxea et al 2018, Colella et al 2016). '''CMEMS KEY FINDINGS''' The 2019 average chlorophyll anomaly in the Mediterranean Sea is 1.02 mg m-3 (0.005 in log10 [mg m-3]), with a maximum value of 73 mg m-3 (1.86 log10 [mg m-3]) and a minimum value of 0.04 mg m-3 (-1.42 log10 [mg m-3]). The overall east west divided pattern reported in 2016, showing negative anomalies for the Western Mediterranean Sea and positive anomalies for the Levantine Sea (Sathyendranath et al., 2018b) is modified in 2019, with a widespread positive anomaly all over the eastern basin, which reaches the western one, up to the offshore water at the west of Sardinia. Negative anomaly values occur in the coastal areas of the basin and in some sectors of the Alboràn Sea. In the northwestern Mediterranean the values switch to be positive again in contrast to the negative values registered in 2017 anomaly. The North Adriatic Sea shows a negative anomaly offshore the Po river, but with weaker value with respect to the 2017 anomaly map.

'''DEFINITION''' The temporal evolution of thermosteric sea level in an ocean layer (here: 0-700m) is obtained from an integration of temperature driven ocean density variations, which are subtracted from a reference climatology (here 1993-2014) to obtain the fluctuations from an average field. The regional thermosteric sea level values from 1993 to close to real time are then averaged from 60°S-60°N aiming to monitor interannual to long term global sea level variations caused by temperature driven ocean volume changes through thermal expansion as expressed in meters (m). '''CONTEXT''' The global mean sea level is reflecting changes in the Earth’s climate system in response to natural and anthropogenic forcing factors such as ocean warming, land ice mass loss and changes in water storage in continental river basins (IPCC, 2019). Thermosteric sea-level variations result from temperature related density changes in sea water associated with volume expansion and contraction (Storto et al., 2018). Global thermosteric sea level rise caused by ocean warming is known as one of the major drivers of contemporary global mean sea level rise (WCRP, 2018). '''CMEMS KEY FINDINGS''' Since the year 1993 the upper (0-700m) near-global (60°S-60°N) thermosteric sea level rises at a rate of 1.5±0.1 mm/year.

'''DEFINITION''' Ocean acidification is quantified by decreases in pH, which is a measure of acidity: a decrease in pH value means an increase in acidity, that is, acidification. The observed decrease in ocean pH resulting from increasing concentrations of CO2 is an important indicator of global change. The estimate of global mean pH builds on a reconstruction methodology, * Obtain values for alkalinity based on the so called “locally interpolated alkalinity regression (LIAR)” method after Carter et al., 2016; 2018. * Build on surface ocean partial pressure of carbon dioxide (CMEMS product: MULTIOBS_GLO_BIO_CARBON_SURFACE_REP_015_008) obtained from an ensemble of Feed-Forward Neural Networks (Chau et al. 2022) which exploit sampling data gathered in the Surface Ocean CO2 Atlas (SOCAT) (https://www.socat.info/) * Derive a gridded field of ocean surface pH based on the van Heuven et al., (2011) CO2 system calculations using reconstructed pCO2 (MULTIOBS_GLO_BIO_CARBON_SURFACE_REP_015_008) and alkalinity. The global mean average of pH at yearly time steps is then calculated from the gridded ocean surface pH field. It is expressed in pH unit on total hydrogen ion scale. In the figure, the amplitude of the uncertainty (1σ ) of yearly mean surface sea water pH varies at a range of (0.0023, 0.0029) pH unit (see Quality Information Document for more details). The trend and uncertainty estimates amount to -0.0017±0.0004e-1 pH units per year. The indicator is derived from in situ observations of CO2 fugacity (SOCAT data base, www.socat.info, Bakker et al., 2016). These observations are still sparse in space and time. Monitoring pH at higher space and time resolutions, as well as in coastal regions will require a denser network of observations and preferably direct pH measurements. A full discussion regarding this OMI can be found in section 2.10 of the Ocean State Report 4 (Gehlen et al., 2020). '''CONTEXT''' The decrease in surface ocean pH is a direct consequence of the uptake by the ocean of carbon dioxide. It is referred to as ocean acidification. The International Panel on Climate Change (IPCC) Workshop on Impacts of Ocean Acidification on Marine Biology and Ecosystems (2011) defined Ocean Acidification as “a reduction in the pH of the ocean over an extended period, typically decades or longer, which is caused primarily by uptake of carbon dioxide from the atmosphere, but can also be caused by other chemical additions or subtractions from the ocean”. The pH of contemporary surface ocean waters is already 0.1 lower than at pre-industrial times and an additional decrease by 0.33 pH units is projected over the 21st century in response to the high concentration pathway RCP8.5 (Bopp et al., 2013). Ocean acidification will put marine ecosystems at risk (e.g. Orr et al., 2005; Gehlen et al., 2011; Kroeker et al., 2013). The monitoring of surface ocean pH has become a focus of many international scientific initiatives (http://goa-on.org/) and constitutes one target for SDG14 (https://sustainabledevelopment.un.org/sdg14). '''CMEMS KEY FINDINGS''' Since the year 1985, global ocean surface pH is decreasing at a rate of -0.0017±0.019 decade-1 '''DOI (product):''' https://doi.org/10.48670/moi-00224

'''DEFINITION''' Estimates of Arctic sea ice extent are obtained from the surface of oceans grid cells that have at least 15% sea ice concentration. These values are cumulated in the entire Northern Hemisphere (excluding ice lakes) and from 1993 up to the year 2019 aiming to: i) obtain the Arctic sea ice extent as expressed in millions of km square (106 km2) to monitor both the large-scale variability and mean state and change. ii) to monitor the change in sea ice extent as expressed in millions of km squared per decade (106 km2/decade), or in sea ice extent loss since the beginning of the time series as expressed in percent per decade (%/decade; reference period being the first date of the key figure b) dot-dashed trend line, Vaughan et al., 2013). These trends are calculated in three ways, i.e. (i) from the annual mean values; (ii) from the March values (winter ice loss); (iii) from September values (summer ice loss). The Arctic sea ice extent used here is based on the “multi-product” (GLOBAL_MULTIYEAR_PHY_ENS_001_031) approach as introduced in the second issue of the Ocean State Report (CMEMS OSR, 2017). Five global products have been used to build the ensemble mean, and its associated ensemble spread. '''CONTEXT''' Sea ice is frozen seawater that floats on the ocean surface. This large blanket of millions of square kilometers insulates the relatively warm ocean waters from the cold polar atmosphere. The seasonal cycle of the sea ice, forming and melting with the polar seasons, impacts both human activities and biological habitat. Knowing how and how much the sea ice cover is changing is essential for monitoring the health of the Earth as sea ice is one of the highest sensitive natural environments. Variations in sea ice cover can induce changes in ocean stratification, in global and regional sea level rates and modify the key rule played by the cold poles in the Earth engine (IPCC, 2019). The sea ice cover is monitored here in terms of sea ice extent quantity. More details and full scientific evaluations can be found in the CMEMS Ocean State Report (Samuelsen et al., 2016; Samuelsen et al., 2018). '''CMEMS KEY FINDINGS''' Since the year 1993 to 2023 the Arctic sea ice extent has decreased significantly at an annual rate of -0.57*106 km2 per decade. This represents an amount of -4.8 % per decade of Arctic sea ice extent loss over the period 1993 to 2023. Over the period 1993 to 2018, summer (September) sea ice extent loss amounts to -1.18*106 km2/decade (September values), which corresponds to -14.85% per decade. Winter (March) sea ice extent loss amounts to -0.57*106 km2/decade, which corresponds to -3.42% per decade. These values slightly exceed the estimates given in the AR5 IPCC assessment report (estimate up to the year 2012) as a consequence of continuing Northern Hemisphere sea ice extent loss. Main change in the mean seasonal cycle is characterized by less and less presence of sea ice during summertime with time. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00190

'''This product has been archived''' For operationnal and online products, please visit https://marine.copernicus.eu '''DEFINITION''' The trend map is derived from version 5 of the global climate-quality chlorophyll time series produced by the ESA Ocean Colour Climate Change Initiative (ESA OC-CCI, Sathyendranath et al. 2019; Jackson 2020) and distributed by CMEMS. The trend detection method is based on the Census-I algorithm as described by Vantrepotte et al. (2009), where the time series is decomposed as a fixed seasonal cycle plus a linear trend component plus a residual component. The linear trend is expressed in % year -1, and its level of significance (p) calculated using a t-test. Only significant trends (p < 0.05) are included. '''CONTEXT''' Phytoplankton are key actors in the carbon cycle and, as such, recognised as an Essential Climate Variable (ECV). Chlorophyll concentration is the most widely used measure of the concentration of phytoplankton present in the ocean. Drivers for chlorophyll variability range from small-scale seasonal cycles to long-term climate oscillations and, most importantly, anthropogenic climate change. Due to such diverse factors, the detection of climate signals requires a long-term time series of consistent, well-calibrated, climate-quality data record. Furthermore, chlorophyll analysis also demands the use of robust statistical temporal decomposition techniques, in order to separate the long-term signal from the seasonal component of the time series. '''CMEMS KEY FINDINGS''' The average global trend for the 1997-2020 period was 0.59% per year, with a maximum value of 25% per year and a minimum value of -6.1% per year. Positive trends are pronounced in the high latitudes of both northern and southern hemisphehres. The significant increases in chlorophyll reported in 2016-2017 (Sathyendranath et al., 2018b) for the Atlantic and Pacific oceans at high latitudes continued to be observed after the 2020 extension, as well as the negative trends over the equatorial Pacific and the Indian Ocean Gyre. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00230

'''DEFINITION''' Heat transport across lines are obtained by integrating the heat fluxes along some selected sections and from top to bottom of the ocean. The values are computed from models’ daily output. The mean value over a reference period (1993-2014) and over the last full year are provided for the ensemble product and the individual reanalysis, as well as the standard deviation for the ensemble product over the reference period (1993-2014). The values are given in PetaWatt (PW). '''CONTEXT''' The ocean transports heat and mass by vertical overturning and horizontal circulation, and is one of the fundamental dynamic components of the Earth’s energy budget (IPCC, 2013). There are spatial asymmetries in the energy budget resulting from the Earth’s orientation to the sun and the meridional variation in absorbed radiation which support a transfer of energy from the tropics towards the poles. However, there are spatial variations in the loss of heat by the ocean through sensible and latent heat fluxes, as well as differences in ocean basin geometry and current systems. These complexities support a pattern of oceanic heat transport that is not strictly from lower to high latitudes. Moreover, it is not stationary and we are only beginning to unravel its variability. '''CMEMS KEY FINDINGS''' The mean transports estimated by the ensemble global reanalysis are comparable to estimates based on observations; the uncertainties on these integrated quantities are still large in all the available products. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00245

Grid processed for the purpose of the HR DTMs layer of EMODnet Bathymetry HRSM, October 2018

'''DEFINITION''' Variations of the Mediterranean Outflow Water at 1000 m depth are monitored through area-averaged salinity anomalies in specifically defined boxes. The salinity data are extracted from several CMEMS products and averaged in the corresponding monitoring domain: * IBI-MYP: IBI_MULTIYEAR_PHY_005_002 * IBI-NRT: IBI_ANALYSISFORECAST_PHYS_005_001 * GLO-MYP: GLOBAL_REANALYSIS_PHY_001_030 * CORA: INSITU_GLO_TS_REP_OBSERVATIONS_013_002_b * ARMOR: MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012 The anomalies of salinity have been computed relative to the monthly climatology obtained from IBI-MYP. Outcomes from diverse products are combined to deliver a unique multi-product result. Multi-year products (IBI-MYP, GLO,MYP, CORA, and ARMOR) are used to show an ensemble mean and the standard deviation of members in the covered period. The IBI-NRT short-range product is not included in the ensemble, but used to provide the deterministic analysis of salinity anomalies in the most recent year. '''CONTEXT''' The Mediterranean Outflow Water is a saline and warm water mass generated from the mixing processes of the North Atlantic Central Water and the Mediterranean waters overflowing the Gibraltar sill (Daniault et al., 1994). The resulting water mass is accumulated in an area west of the Iberian Peninsula (Daniault et al., 1994) and spreads into the North Atlantic following advective pathways (Holliday et al. 2003; Lozier and Stewart 2008, de Pascual-Collar et al., 2019). The importance of the heat and salt transport promoted by the Mediterranean Outflow Water flow has implications beyond the boundaries of the Iberia-Biscay-Ireland domain (Reid 1979, Paillet et al. 1998, van Aken 2000). For example, (i) it contributes substantially to the salinity of the Norwegian Current (Reid 1979), (ii) the mixing processes with the Labrador Sea Water promotes a salt transport into the inner North Atlantic (Talley and MacCartney, 1982; van Aken, 2000), and (iii) the deep anti-cyclonic Meddies developed in the African slope is a cause of the large-scale westward penetration of Mediterranean salt (Iorga and Lozier, 1999). Several studies have demonstrated that the core of Mediterranean Outflow Water is affected by inter-annual variability. This variability is mainly caused by a shift of the MOW dominant northward-westward pathways (Bozec et al. 2011), it is correlated with the North Atlantic Oscillation (Bozec et al. 2011) and leads to the displacement of the boundaries of the water core (de Pascual-Collar et al., 2019). The variability of the advective pathways of MOW is an oceanographic process that conditions the destination of the Mediterranean salt transport in the North Atlantic. Therefore, monitoring the Mediterranean Outflow Water variability becomes decisive to have a proper understanding of the climate system and its evolution (e.g. Bozec et al. 2011, Pascual-Collar et al. 2019). The CMEMS IBI-OMI_WMHE_mow product is aimed to monitor the inter-annual variability of the Mediterranean Outflow Water in the North Atlantic. The objective is the establishment of a long-term monitoring program to observe the variability and trends of the Mediterranean water mass in the IBI regional seas. To do that, the salinity anomaly is monitored in key areas selected to represent the main reservoir and the three main advective spreading pathways. More details and a full scientific evaluation can be found in the CMEMS Ocean State report Pascual et al., 2018 and de Pascual-Collar et al. 2019. '''CMEMS KEY FINDINGS''' The absence of long-term trends in the monitoring domain Reservoir (b) suggests the steadiness of water mass properties involved on the formation of Mediterranean Outflow Water. Results obtained in monitoring box North (c) present an alternance of periods with positive and negative anomalies. The last negative period started in 2016 reaching up to the present. Such negative events are linked to the decrease of the northward pathway of Mediterranean Outflow Water (Bozec et al., 2011), which appears to return to steady conditions in 2020 and 2021. Results for box West (d) reveal a cycle of negative (2015-2017) and positive (2017 up to the present) anomalies. The positive anomalies of salinity in this region are correlated with an increase of the westward transport of salinity into the inner North Atlantic (de Pascual-Collar et al., 2019), which appear to be maintained for years 2020-2021. Results in monitoring boxes North and West are consistent with independent studies (Bozec et al., 2011; and de Pascual-Collar et al., 2019), suggesting a westward displacement of Mediterranean Outflow Water and the consequent contraction of the northern boundary. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00258

'''This product has been archived'''                For operationnal and online products, please visit https://marine.copernicus.eu '''DEFINITION''' The indicator of the Kuroshio extension phase variations is based on the standardized high frequency altimeter Eddy Kinetic Energy (EKE) averaged in the area 142-149°E and 32-37°N and computed from the DUACS (https://duacs.cls.fr) delayed-time (reprocessed version DT-2021, CMEMS SEALEVEL_GLO_PHY_L4_MY_008_047) and near real-time (CMEMS SEALEVEL_GLO_PHY_L4_NRT_OBSERVATIONS_008_046) altimeter sea level gridded products. The change in the reprocessed version (previously DT-2018) and the extension of the mean value of the EKE (now 27 years, previously 20 years) induce some slight changes not impacting the general variability of the Kuroshio extension (correlation coefficient of 0.988 for the total period, 0.994 for the delayed time period only). '''CONTEXT''' The long-term mean and trends alone do not give a complete view of the likely changes in position of unstable western boundary current extensions (Kelly et al., 2010). The Kuroshio Extension is an eastward-flowing current in the subtropical western North Pacific after the Kuroshio separates from the coast of Japan at 35°N, 140°E. Being the extension of a wind-driven western boundary current, the Kuroshio Extension is characterized by a strong variability and is rich in large-amplitude meanders and energetic eddies (Niiler et al., 2003; Qiu, 2003, 2002). The Kuroshio Extension region has the largest sea surface height variability on sub-annual and decadal time scales in the extratropical North Pacific Ocean (Jayne et al., 2009; Qiu and Chen, 2010, 2005). Prediction and monitoring of the path of the Kuroshio are of huge importance for local economies as the position of the Kuroshio extension strongly determines the regions where phytoplankton and hence fish are located. '''CMEMS KEY FINDINGS''' The different states of the Kuroshio extension phase have been presented and validated by Bessières et al. (2013) and further reported by Drévillon et al. (2018) in the Copernicus Ocean State Report #2. Two rather different states of the Kuroshio extension are observed: an ‘elongated state’ (also called ‘strong state’) corresponding to a narrow strong steady jet, and a ‘contracted state’ (also called ‘weak state’) in which the jet is weaker and more unsteady, spreading on a wider latitudinal band. When the Kuroshio Extension jet is in a contracted (elongated) state, the upstream Kuroshio Extension path tends to become more (less) variable and regional eddy kinetic energy level tends to be higher (lower). In between these two opposite phases, the Kuroshio extension jet has many intermediate states of transition and presents either progressively weakening or strengthening trends. In 2018, the indicator reveals an elongated state followed by a weakening neutral phase since then. '''DOI (product):''' https://doi.org/10.48670/moi-00222