2022
Type of resources
Available actions
Topics
Keywords
Contact for the resource
Provided by
Years
Formats
Representation types
Update frequencies
status
Service types
Scale
Resolution
-
Understanding the dynamics of species interactions for food (prey-predator, competition for resources) and the functioning of trophic networks (dependence on trophic pathways, food chain flows, etc.) has become a thriving ecological research field in recent decades. This empirical knowledge is then used to develop population and ecosystem modelling approaches to support ecosystem-based management. The TrophicCS data set offers spatialized trophic information on a large spatial scale (the entire Celtic Sea continental shelf and upper slope) for a wide range of species. It combines ingested prey (gut content analysis) and a more integrated indicator of food sources (stable isotope analysis). A total of 1337 samples of large epifaunal invertebrates (bivalve mollusks and decapod crustaceans), zooplankton, fish and cephalopods, corresponding to 114 species, were collected and analyzed for stable isotope analysis of their carbon and nitrogen content. Sample size varied between taxa (from 1 to 52), with an average of 11.72 individuals sampled per species, and water depths ranged from 57 to 516 m. The gut contents of 1026 fish belonging to ten commercially important species: black anglerfish (Lophius budegassa), white anglerfish (Lophius piscatorius), blue whiting (Micromesistius poutassou), cod (Gadus morhua), haddock (Melanogrammus aeglefinus), hake (Merluccius merluccius), megrim (Lepidorhombus whiffiagonis), plaice (Pleuronectes platessa), sole (Solea solea) and whiting (Merlangius merlangus) were analyzed. The stomach content data set contains the occurrence of prey in stomach, identified to the lowest taxonomic level possible. To consider potential ontogenetic diet changes, a large size range was sampled. The TrophicCS data set was used to improve understanding of trophic relationships and ecosystem functioning in the Celtic Sea. When you use the data in your publication, we request that you cite this data paper. If you use the present data set (TrophicCS) for the majority of the data analyzed in your study, you may wish to consider inviting at least one author of the core team of this data paper to become a collaborator /coauthor of your paper.
-
The ClimateFish database collates abundance data of 15 fish species proposed as candidate indicators of climate change in the Mediterranean Sea. An initial group of eight Mediterranean indigenous species (Epinephelus marginatus, Thalassoma pavo, Sparisoma cretense, Coris julis, Sarpa salpa, Serranus scriba, Serranus cabrilla and Caranx crysos) with wide distribution, responsiveness to temperature conditions and easy identification were selected by a network of Mediterranean scientists joined under the CIESM programme ‘Tropical Signals’ (https://www.ciesm.org/marine/programs/tropicalization.htm; Azzurro et al. 2010). Soon after, and thanks to the discussion with other expert groups and projects, C. crysos was no longer considered, and Lessepsian fishes (Red Sea species entering the Mediterranean through the Suez Canal) were included, namely: Fistularia commersonii, Siganus luridus, Siganus rivulatus, Pterois miles, Stephanolopis diaspros, Parupeneus forskali, Pempheris rhomboidea and Torquigener flavimaculosus. Considering the trend of increase of these species in the Mediterranean Sea (Golani et al. 2021) and their projected distribution according to climate change scenarios (D’Amen and Azzurro, 2020), more data on these tropical invaders are expected to come in the future implementation of the study. Data were collected according to a simplified visual census methodology (Garrabou et al. 2019) along standard transects of five minutes performed at a constant speed of 10m/min, corresponding approximately to an area of 50x5m. Four different depth layers were surveyed: 0-3m, 5-10 m, 11-20 m, 21-30 m. So far, the ClimateFish database includes fish counts collected along 3142 transects carried out in seven Mediterranean countries between 2009 and 2021, for a total number of 101'771 observed individuals belonging to the 15 fish species. Data were collected by a large team of researchers which joined in a common monitoring strategy supported by different international projects, which are acknowledged below. This database, when associated with climate data, offers new opportunities to investigate spatio-temporal effects of climate change in the Mediterranean Sea and test the effectiveness of each species as a possible climate change indicator. Contacts: ernesto.azzurro(at)cnr.it References: Azzurro E., Maynou F., Moschella P. (2010). A simplified visual census methodology to detect variability trends of coastal mediterranean fishes under climate change scenarios. Rapp. Comm. int. Mer Médit., 39. D’Amen, M. and Azzurro, E. (2020). Lessepsian fish invasion in Mediterranean marine protected areas: a risk assessment under climate change scenarios. ICES Journal of Marine Science, 77(1), pp.388-397. Garrabou, J., Bensoussan, N., Azzurro, E. (2019). Monitoring climate-related responses in Mediterranean marine protected areas and beyond: five standard protocols. Golani D., Azzurro E., Dulčić J., Massutí E., Orsi-Relini L. (2021). Atlas of Exotic Fishes in the Mediterranean Sea. 2nd edition [F. Briand, Ed.] 365 pages. CIESM Publishers, Paris, Monaco. ISBN number 978-92-990003-5-9
-
The Level 4 merged microwave wind product is a complete set of hourly global 10-m wind maps on a 0.25x0.25 degree latitude-longitude grid, spanning 1 Jan 2010 through the end of 2020. The product combines background neutral equivalent wind fields from ERA5, daily surface current fields from CMEMS, and stress equivalent winds obtained from several microwave passive and active sensors to produce hourly surface current relative stress equivalent wind analyses. The satellite winds include those from recently launched L-band passive sensors capable of measuring extreme winds in tropical cyclones, with little or no degradation from precipitation. All satellite winds used in the analyses have been recalibrated using a large set of collocated satellite-SFMR wind data in storm-centric coordinates. To maximize the use of the satellite microwave data, winds within a 24-hour window centered on the analysis time have been incorporated into each analysis. To accomodate the large time window, satellite wind speeds are transformed into deviations from ERA5 background wind speeds interpolated to the measurement times, and then an optical flow-based morphing technique is applied to these wind speed increments to propagate them from measurement to analysis time. These morphed wind speed increments are then added to the background wind speed at the analysis time to yield a set of total wind speeds fields for each sensor at the analysis time. These individual sensor wind speed fields are then combined with the background 10-m wind direction to yield vorticity and divergence fields for the individual sensor winds. From these, merged vorticity and divergence fields are computed as a weighted average of the individual vorticity and divergence fields. The final vector wind field is then obtained directly from these merged vorticity and divergence fields. Note that one consequence of producing the analyses in terms of vorticity and divergence is that there are no discontinuities in the wind speed fields at the (morphed) swath edges. There are two important points to be noted: the background ERA5 wind speed fields have been rescaled to be globally consistent with the recalibrated AMSR2 wind speeds. This rescaling involves a large increase in the ERA5 background winds beyond about 17 m/s. For example, an ERA5 10 m wind speed of 30 m/s is transformed into a wind speed of 41 m/s, and a wind speed of 34 m/s is transformed into a wind speed of about 48 m/s. Besides the current version of the product is calibrated for use within tropical cyclones and is not appropriate for use elsewhere. This dataset was produced in the frame of ESA MAXSS project. The primary objective of the ESA Marine Atmosphere eXtreme Satellite Synergy (MAXSS) project is to provide guidance and innovative methodologies to maximize the synergetic use of available Earth Observation data (satellite, in situ) to improve understanding about the multi-scale dynamical characteristics of extreme air-sea interaction.
-
In recent years, large datasets of in situ marine carbonate system parameters (partial pressure of CO2 (pCO2), total alkalinity, dissolved inorganic carbon and pH) have been collated. These carbonate system datasets have highly variable data density in both space and time, especially in the case of pCO2, which is routinely measured at high frequency using underway measuring systems. This variation in data density can create biases when the data are used, for example for algorithm assessment, favouring datasets or regions with high data density. A common way to overcome data density issues is to bin the data into cells of equal latitude and longitude extent. This leads to bins with spatial areas that are latitude and projection dependent (eg become smaller and more elongated as the poles are approached). Additionally, as bin boundaries are defined without reference to the spatial distribution of the data or to geographical features, data clusters may be divided sub-optimally (eg a bin covering a region with a strong gradient). To overcome these problems and to provide a tool for matching in situ data with satellite, model and climatological data, which often have very different spatiotemporal scales both from the in situ data and from each other, a methodology has been created to group in situ data into ‘regions of interest’, spatiotemporal cylinders consisting of circles on the Earth’s surface extending over a period of time. These regions of interest are optimally adjusted to contain as many in situ measurements as possible. All in situ measurements of the same parameter contained in a region of interest are collated, including estimated uncertainties and regional summary statistics. The same grouping is done for each of the other datasets, producing a dataset of matchups. About 35 million in situ datapoints were then matched with data from five satellite sources and five model and re-analysis datasets to produce a global matchup dataset of carbonate system data, consisting of 287,000 regions of interest spanning 54 years from 1957 to 2020. Each region of interest is 100 km in diameter and 10 days in duration. An example application, the reparameterisation of a global total alkalinity algorithm, is shown. This matchup dataset can be updated as and when in situ and other datasets are updated, and similar datasets at finer spatiotemporal scale can be constructed, for example to enable regional studies. This dataset was funded by ESA Satellite Oceanographic Datasets for Acidification (OceanSODA) project which aims at developing the use of satellite Earth Observation for studying and monitoring marine carbonate chemistry.
-
The CDR-derived Wet Tropospheric Correction (WTC) Product V2 is generated from the Level-2+ along-track altimetry products version 2024 (L2P 2024) distributed by AVISO+ (www.aviso.altimetry.fr). It provides a long-term, homogenized estimation of the wet tropospheric correction based on Climate Data Records (CDRs) of atmospheric water vapour combined with high frequencies MWR data. Two independent CDRs datasets are used: - REMSS V7R2 (coverage until 2022) https://www.remss.com/measurements/atmospheric-water-vapor/tpw-1-deg-product/ - HOAPS V5 precursor CDR from EUMETSAT CM SAF (coverage until 2020) HOAPS V4/V5 data available via https://wui.cmsaf.eu Note: the HOAPS V5 precursor is not yet an official CM SAF product; full validation and public release are pending. The MWR/CDR WTC V2 estimates is derived using spatially varying but temporally constant polynomial coefficients (ai). 1. WTC V2 – Along-track L2P Product Data format: The WTC V2 product is delivered in Level-2+ (L2P) format, along the satellite ground track. Each mission is distributed as a compressed archive (.tar.gz) containing one NetCDF4 CF-1.8 file per mission cycle. Archive naming convention: <mission>_WTC_from_WV_CDR_<version>.tar.gz mission: TP (TOPEX/Poseidon), J1, J2, J3 version: product version (currently V2) File naming convention inside archives: <mission>_C<cycle>.nc cycle: 4-digit cycle index (e.g., C0001) Each NetCDF file contains: 1/ Along-track WTC estimate; 2/ Ancillary information; 3/ Space–time coordinates 2. WTC CDR Uncertainties – Gridded Product: A complementary product is provided, delivering regional trend estimates and associated uncertainties from the WTC Climate Data Record. The uncertainty product is distributed as a single NetCDF4 file: wtc_trend_uncertainties.nc . This file contains global gridded fields of WTC CDR trend and uncertainty parameters. Product content: This is the first dedicated version providing both: WTC CDR (HOAPS) linear trends, and Uncertainty estimates on these trends. Uncertainties are expressed as 1-sigma confidence intervals, and propagated using the methodology described in Section 2.3 of the Product User Manual. The product includes: - Total uncertainty on the WTC trend, propagated from all identified uncertainty sources in the WTC–TCWV regression. - Individual contributions of uncertainty sources (Uncertainties on regression coefficients: a0, a1 and their standard deviations; Uncertainties inherited from the HOAPS TCWV CDR) These fields enable users to assess the relative importance of each uncertainty component and recompute uncertainty propagation with alternative methods. Included regression input variables: To ensure transparency and reproducibility, the product provides: 1/ regression coefficients a0, a1; 2/ their associated uncertainties (std of a0, std of a1); 3/additional diagnostic fields required to recompute uncertainties if needed.
-
French intertidal and subtidal Macroalgae taxa data are collected during monitoring surveys on the English Channel / Bay of Biscay coasts. Protocols are implemented in the Water Framework Directive. Data are transmitted in a Seadatanet format (CDI + ODV) to EMODnet Biology european database. 131 ODV files have been generated from period 01/01/2006 to 31/12/2021.
-
A prerequisite for a successful development of a multi-mission wind dataset is to ensure good inter-calibration of the different extreme wind datasets to be integrated in the product. Since the operational hurricane community is working with the in-situ dropsondes as wind speed reference, which are in turn used to calibrate the NOAA Hurricane Hunter Stepped Frequency Microwave Radiometer (SFMR) wind data, MAXSS has used the latter to ensure extreme-wind inter-calibration among the following scatterometer and radiometer systems: the Advanced Scatterometers onboard the Metop series (i.e., ASCAT-A, -B, and -C), the scatterometers onboard Oceansat-2 (OSCAT) and ScatSat-1 (OSCAT-2), and onboard the HY-2 series (HSCAT-A, -B); the Advanced Microwave Scanning Radiometer 2 onboard GCOM-W1(AMSR-2), the multi-frequency polarimetric radiometer (Windsat), and the L-band radiometers onboard the Soil Moisture and Ocean Salinity (SMOS) and the Soil Moisture Active Passive (SMAP) missions. In summary, a two-step strategy has been followed to adjust the high and extreme wind speeds derived from the mentioned scatterometer and radiometer systems, available in the period 2009-2020. First, the C-band ASCATs have been adjusted against collocated storm-motion centric SFMR wind data. Then, both SFMR winds and ASCAT adjusted winds have been used to adjust all the other satellite wind systems. In doing so, a good inter-calibration between all the systems is ensured not only under tropical cyclone (TC) conditions, but also elsewhere. This dataset was produced in the frame of the ESA funded Marine Atmosphere eXtreme Satellite Synergy (MAXSS) project. The primary objective of the ESA Marine Atmosphere eXtreme Satellite Synergy (MAXSS) project is to provide guidance and innovative methodologies to maximize the synergetic use of available Earth Observation data (satellite, in situ) to improve understanding about the multi-scale dynamical characteristics of extreme air-sea interaction.
-
In order to better characterize the genetic diversity of Cetaceans and especially the common Dolphin from the Bay of Biscay, sequences from the variable mitochondrial control region were obtained from water samples acquired close to groups of dolphins.
-
The SARWAVE project is developing a new sea state processor from SAR images to be applied over open ocean, sea ice, and coastal areas, and exploring potential synergy with other microwave and optical EO products.
-
The Programme Ocean Multidisciplinaire Meso Echelle (POMME) was designed to describe and quantify the role of mesoscale processes in the subduction of mode waters in the Northeast Atlantic. Intensive situ measurements were maintained during 1 year (September 2000 - October 2001), over a 8 degrees square area centered on 18 degrees W, 42 degrees N. In order to synthesized the in-situ physical observations, and merge them with satellite altimetry and surface fluxes datasets, a simplified Kalman filter has been designed. Daily fields of temperature, salinity, and stream function were produced on a regular grid over a full seasonal cycle. We propose here the gridded fields (KA_ files) and the in-situ datasets used by the analysis (Data_ files).
Catalogue PIGMA