2022
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In recent years, large datasets of in situ marine carbonate system parameters (partial pressure of CO2 (pCO2), total alkalinity, dissolved inorganic carbon and pH) have been collated. These carbonate system datasets have highly variable data density in both space and time, especially in the case of pCO2, which is routinely measured at high frequency using underway measuring systems. This variation in data density can create biases when the data are used, for example for algorithm assessment, favouring datasets or regions with high data density. A common way to overcome data density issues is to bin the data into cells of equal latitude and longitude extent. This leads to bins with spatial areas that are latitude and projection dependent (eg become smaller and more elongated as the poles are approached). Additionally, as bin boundaries are defined without reference to the spatial distribution of the data or to geographical features, data clusters may be divided sub-optimally (eg a bin covering a region with a strong gradient). To overcome these problems and to provide a tool for matching in situ data with satellite, model and climatological data, which often have very different spatiotemporal scales both from the in situ data and from each other, a methodology has been created to group in situ data into ‘regions of interest’, spatiotemporal cylinders consisting of circles on the Earth’s surface extending over a period of time. These regions of interest are optimally adjusted to contain as many in situ measurements as possible. All in situ measurements of the same parameter contained in a region of interest are collated, including estimated uncertainties and regional summary statistics. The same grouping is done for each of the other datasets, producing a dataset of matchups. About 35 million in situ datapoints were then matched with data from five satellite sources and five model and re-analysis datasets to produce a global matchup dataset of carbonate system data, consisting of 287,000 regions of interest spanning 54 years from 1957 to 2020. Each region of interest is 100 km in diameter and 10 days in duration. An example application, the reparameterisation of a global total alkalinity algorithm, is shown. This matchup dataset can be updated as and when in situ and other datasets are updated, and similar datasets at finer spatiotemporal scale can be constructed, for example to enable regional studies. This dataset was funded by ESA Satellite Oceanographic Datasets for Acidification (OceanSODA) project which aims at developing the use of satellite Earth Observation for studying and monitoring marine carbonate chemistry. **This version is now superseded by the version 4 with higher spatial and temporal resolution**
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WGS for Iatlantic projet ( ) for assessing past and present connectivity
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This dataset provides detections of fronts derived from high resolution remote sensing SST observations by SEVIRI L3C from OSISAF over Western Europe region. The data are available through HTTP and FTP; access to the data is free and open. In order to be informed about changes and to help us keep track of data usage, we encourage users to register at: https://forms.ifremer.fr/lops-siam/access-to-esa-world-ocean-circulation-project-data/ This dataset was generated by OceanDataLab and is distributed by Ifremer / CERSAT in the frame of the World Ocean Circulation (WOC) project funded by the European Space Agency (ESA).
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This dataset provides Level 4 total current including geostrophy and a data-driven approach for Ekman and near-inertial current, based on a convolution between drifter observation and wind history, to fit empirically a complex and time-lag dependant transfert function between ERA5 wind stress and current The data are available through HTTP and FTP; access to the data is free and open. In order to be informed about changes and to help us keep track of data usage, we encourage users to register at: https://forms.ifremer.fr/lops-siam/access-to-esa-world-ocean-circulation-project-data/ This dataset was generated by Datlas and is distributed by Ifremer / CERSAT in the frame of the World Ocean Circulation (WOC) project funded by the European Space Agency (ESA).
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The ESA Sea State Climate Change Initiative (CCI) project has produced global multi-sensor time-series of along-track satellite altimeter significant wave height data (referred to as Level 2P (L2P) data) with a particular focus for use in climate studies. This dataset contains the Version 3 Remote Sensing Significant Wave Height product, which provides along-track data at approximately 6 km spatial resolution, separated per satellite and pass, including all measurements with flags, corrections and extra parameters from other sources. These are expert products with rich content and no data loss. The altimeter data used in the Sea State CCI dataset v3 come from multiple satellite missions spanning from 2002 to 2022021 (Envisat, CryoSat-2, Jason-1, Jason-2, Jason-3, SARAL, Sentinel-3A), therefore spanning over a shorter time range than version 1.1. Unlike version 1.1, this version 3 involved a complete and consistent retracking of all the included altimeters. Many altimeters are bi-frequency (Ku-C or Ku-S) and only measurements in Ku band were used, for consistency reasons, being available on each altimeter but SARAL (Ka band).
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Particularly suited to the purpose of measuring the sensitivity of benthic communities to trawling, a trawl disturbance indicator (de Juan and Demestre, 2012, de Juan et al. 2009) was proposed based on benthic species biological traits to evaluate the sensibility of mega- and epifaunal community to fishing pressure known to have a physical impact on the seafloor (such as dredging and bottom trawling). The selected biological traits were chosen as they determine vulnerability to trawling: mobility, fragility, position on substrata, average size and feeding mode that can easily be related to the fragility, recoverability and vulnerability ecological concepts. The five categories retained are functional traits that were selected based on the knowledge of the response of benthic taxa to trawling disturbance (de Juan et al., 2009). They reflect respectively the possibility to avoid direct gear impact, to benefit from trawling for feeding, to escape gear, to get caught by the net and to resist trawling/dredging action, each of these characteristics being either advantageous or sensitive to trawling. To expand this approach to that proposed by Certain et al. (2015), the protection status of certain species was also indicated. To enable quantitative analysis, a score was assigned to each category: from low sensitivity (0) to high sensitivity (3). Biological traits of species have been defined, from the BIOTIC database (MARLIN, 2014) and from information given by Garcia (2010), Le Pape et al. (2007) and Brind’Amour et al. (2009). For missing traits, additional information from literature has been considered. The protection status of each taxa was also scored: Atlantic species listed in OSPAR List of Threatened and/or Declining Species and Habitats (https://www.ospar.org/work-areas/bdc/species-habitats/list-of-threatened-declining-species-habitats) and Mediterranean species listed in Vulnerable Marine Ecosystems (FAO, 2018 and Oceana, 2017) were scored 3 and other species were scored 1. The scores of 1085 taxa commonly found in bottom trawl by-catch in the southern North Sea, English Channel and north-western Mediterranean were described.
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Phenotypic plasticity, the ability of a single genotype to produce multiple phenotypes, is important for survival when species are faced with novel conditions. Theory predicts that range-edge populations will have greater phenotypic plasticity than core populations, but empirical examples from the wild are rare. The honeycomb worm, Sabellaria alveolata (L.), constructs the largest biogenic reefs in Europe, which support high biodiversity and numerous ecological functions. In order to assess the presence, causes and consequences of intraspecific variation in developmental plasticity and thermal adaptation in the honeycomb worm, we carried out common-garden experiments using the larvae of individuals sampled from along a latitudinal gradient covering the entire range of the species. We exposed larvae to three temperature treatments and measured phenotypic traits throughout development. We found phenotypic plasticity in larval growth rate but local adaptation in terms of larval period. The northern and southern range-edge populations of S. alveolata showed phenotypic plasticity for growth rate: growth rate increased as temperature treatment increased. In contrast, the core range populations showed no evidence of phenotypic plasticity. We present a rare case of range-edge plasticity at both the northern and southern range limit of species, likely caused by evolution of phenotypic plasticity during range expansion and its maintenance in highly heterogeneous environments. This dataset presents the raw image data collected for larval stages of Sabellaria alveolata from 5 populations across Europe and Northern Africa, exposed to 15, 20 and 25 C. Included are also opercular crown measurements used to estimate de size classes of individuals present in each population. All measurements made with the images collected are presented in an Excel spreadsheet, also available here.
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The ClimateFish database collates abundance data of 15 fish species proposed as candidate indicators of climate change in the Mediterranean Sea. An initial group of eight Mediterranean indigenous species (Epinephelus marginatus, Thalassoma pavo, Sparisoma cretense, Coris julis, Sarpa salpa, Serranus scriba, Serranus cabrilla and Caranx crysos) with wide distribution, responsiveness to temperature conditions and easy identification were selected by a network of Mediterranean scientists joined under the CIESM programme ‘Tropical Signals’ (https://www.ciesm.org/marine/programs/tropicalization.htm; Azzurro et al. 2010). Soon after, and thanks to the discussion with other expert groups and projects, C. crysos was no longer considered, and Lessepsian fishes (Red Sea species entering the Mediterranean through the Suez Canal) were included, namely: Fistularia commersonii, Siganus luridus, Siganus rivulatus, Pterois miles, Stephanolopis diaspros, Parupeneus forskali, Pempheris rhomboidea and Torquigener flavimaculosus. Considering the trend of increase of these species in the Mediterranean Sea (Golani et al. 2021) and their projected distribution according to climate change scenarios (D’Amen and Azzurro, 2020), more data on these tropical invaders are expected to come in the future implementation of the study. Data were collected according to a simplified visual census methodology (Garrabou et al. 2019) along standard transects of five minutes performed at a constant speed of 10m/min, corresponding approximately to an area of 50x5m. Four different depth layers were surveyed: 0-3m, 5-10 m, 11-20 m, 21-30 m. So far, the ClimateFish database includes fish counts collected along 3142 transects carried out in seven Mediterranean countries between 2009 and 2021, for a total number of 101'771 observed individuals belonging to the 15 fish species. Data were collected by a large team of researchers which joined in a common monitoring strategy supported by different international projects, which are acknowledged below. This database, when associated with climate data, offers new opportunities to investigate spatio-temporal effects of climate change in the Mediterranean Sea and test the effectiveness of each species as a possible climate change indicator. Contacts: ernesto.azzurro(at)cnr.it References: Azzurro E., Maynou F., Moschella P. (2010). A simplified visual census methodology to detect variability trends of coastal mediterranean fishes under climate change scenarios. Rapp. Comm. int. Mer Médit., 39. D’Amen, M. and Azzurro, E. (2020). Lessepsian fish invasion in Mediterranean marine protected areas: a risk assessment under climate change scenarios. ICES Journal of Marine Science, 77(1), pp.388-397. Garrabou, J., Bensoussan, N., Azzurro, E. (2019). Monitoring climate-related responses in Mediterranean marine protected areas and beyond: five standard protocols. Golani D., Azzurro E., Dulčić J., Massutí E., Orsi-Relini L. (2021). Atlas of Exotic Fishes in the Mediterranean Sea. 2nd edition [F. Briand, Ed.] 365 pages. CIESM Publishers, Paris, Monaco. ISBN number 978-92-990003-5-9
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This dataset provides detections of fronts derived from low resolution optimally interpolated remote sensing microwave SST L4 from REMSS over North Atlantic region. The data are available through HTTP and FTP; access to the data is free and open. In order to be informed about changes and to help us keep track of data usage, we encourage users to register at: https://forms.ifremer.fr/lops-siam/access-to-esa-world-ocean-circulation-project-data/ This dataset was generated by OceanDataLab and is distributed by Ifremer / CERSAT in the frame of the World Ocean Circulation (WOC) project funded by the European Space Agency (ESA).
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The data file present detailed individual congener/compound concentrations for a large variety of hydrophobic organic contaminants including polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs), legacy and alternative brominated flame retardants (BFRs) and per- and polyfluoroalkyl substances (PFASs) in meso- and bathypelagic organisms collected in the Bay of Biscay, northeast Atlantic, in October 2017. The studied species include 3 crustacean species (Pasiphaea sivado, Sergia robusta, Ephyrina figueirai) and 11 fish species (Xenodermichthys copei, Searsia koefoedi, Myctophum punctatum, Notoscopelus kroeyeri, Lampanyctus crocodilus, Argyropelecus olfersii, Arctozenus risso, Stomias boa, Serrivomer beanii, Chauliodus sloani, Aphanopus carbo). The organisms were collected at night during one single trawling using a 25 m vertical opening pelagic trawl in the deep scattering layer (ca 800 m depth in the water column; 1330 m bottom floor). This dataset was used in the article entitled "A large diversity of organohalogen contaminants reach the meso- and bathypelagic organisms in the Bay of Biscay (northeast Atlantic)" published in Marine Pollution Bulletin.
Catalogue PIGMA