2022
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Understanding the dynamics of species interactions for food (prey-predator, competition for resources) and the functioning of trophic networks (dependence on trophic pathways, food chain flows, etc.) has become a thriving ecological research field in recent decades. This empirical knowledge is then used to develop population and ecosystem modelling approaches to support ecosystem-based management. The TrophicCS data set offers spatialized trophic information on a large spatial scale (the entire Celtic Sea continental shelf and upper slope) for a wide range of species. It combines ingested prey (gut content analysis) and a more integrated indicator of food sources (stable isotope analysis). A total of 1337 samples of large epifaunal invertebrates (bivalve mollusks and decapod crustaceans), zooplankton, fish and cephalopods, corresponding to 114 species, were collected and analyzed for stable isotope analysis of their carbon and nitrogen content. Sample size varied between taxa (from 1 to 52), with an average of 11.72 individuals sampled per species, and water depths ranged from 57 to 516 m. The gut contents of 1026 fish belonging to ten commercially important species: black anglerfish (Lophius budegassa), white anglerfish (Lophius piscatorius), blue whiting (Micromesistius poutassou), cod (Gadus morhua), haddock (Melanogrammus aeglefinus), hake (Merluccius merluccius), megrim (Lepidorhombus whiffiagonis), plaice (Pleuronectes platessa), sole (Solea solea) and whiting (Merlangius merlangus) were analyzed. The stomach content data set contains the occurrence of prey in stomach, identified to the lowest taxonomic level possible. To consider potential ontogenetic diet changes, a large size range was sampled. The TrophicCS data set was used to improve understanding of trophic relationships and ecosystem functioning in the Celtic Sea. When you use the data in your publication, we request that you cite this data paper. If you use the present data set (TrophicCS) for the majority of the data analyzed in your study, you may wish to consider inviting at least one author of the core team of this data paper to become a collaborator /coauthor of your paper.
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French intertidal and subtidal Macroalgae taxa data are collected during monitoring surveys on the English Channel / Bay of Biscay coasts. Protocols are implemented in the Water Framework Directive. Data are transmitted in a Seadatanet format (CDI + ODV) to EMODnet Biology european database. 131 ODV files have been generated from period 01/01/2006 to 31/12/2021.
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Reef-building species are recognized as having an important ecological role and as generally enhancing the diversity of benthic organisms in marine habitats. However, although these ecosystem engineers have a facilitating role for some species, they may exclude or compete with others. The honeycomb worm Sabellaria alveolata (Linnaeus, 1767) is an important foundation species, commonly found from northwest Ireland to northern Mauritania (Curd et al., 2020), whose reef structures increase the physical complexity of the marine benthos, supporting high levels of biodiversity. Local patterns and regional differences in taxonomic and functional diversity were examined in honeycomb worm reefs from ten sites along the northeastern Atlantic to explore variation in diversity across biogeographic regions and the potential effects of environmental drivers. To characterize the functional diversity at each site, a biological trait analysis (BTA) was conducted (Statzner et al., 1994). Here we present the functional trait database used for the benthic macrofauna found to live in association with honeycomb worm reefs. Eight biological traits (divided into 32 modalities) were selected (Table 1), providing information linked to the ecological functions performed by the associated macrofauna. The selected traits provide information on: (i) resource use and availability (by the trophic group of species, e.g. Thrush et al. 2006); (ii) secondary production and the amount of energy and organic matter (OM) produced based on the life cycle of the organisms (including longevity, maximum size and mode of reproduction, e.g. (Cusson and Bourget, 2005; Thrush et al., 2006) and; (iii) the behavior of the species in general [i.e. how these species occupy the environment and contribute to biogeochemical fluxes through habitat, movement, and bioturbation activity at different bathymetric levels, e.g. (Solan et al., 2004; Thrush et al., 2006; Queirós et al., 2013). Species were scored for each trait modality based on their affinity using a fuzzy coding approach (Chevenet et al., 1994), where multiple modalities can be attributed to a species if appropriate, and allowed for the incorporation of intraspecific variability in trait expression. The information concerning polychaetes was derived primarily from Fauchald et al (1979) and Jumars et al (2015). Information on other taxonomic groups was obtained either from databases of biological traits (www.marlin.ac.uk/biotic) or publications (Naylor, 1972; King, 1974; Caine, 1977; Lincoln, 1979; Holdich and Jones, 1983; Smaldon et al., 1993; Ingle, 1996; San Martín, 2003; Southward, 2008; Gil, 2011; Leblanc et al., 2011; Rumbold et al., 2012; San Martín and Worsfold, 2015; Jones et al., 2018). Map indicating the locations of the 10 study sites in the UK, France and Portugal within the four biogeographic provinces defined by Dinter (2001). (All sites were sampled in 8 different stations, except for UK4 where 5 stations were sampled).
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Particularly suited to the purpose of measuring the sensitivity of benthic communities to trawling, a trawl disturbance indicator (de Juan and Demestre, 2012, de Juan et al. 2009) was proposed based on benthic species biological traits to evaluate the sensibility of mega- and epifaunal community to fishing pressure known to have a physical impact on the seafloor (such as dredging and bottom trawling). The selected biological traits were chosen as they determine vulnerability to trawling: mobility, fragility, position on substrata, average size and feeding mode that can easily be related to the fragility, recoverability and vulnerability ecological concepts. The five categories retained are functional traits that were selected based on the knowledge of the response of benthic taxa to trawling disturbance (de Juan et al., 2009). They reflect respectively the possibility to avoid direct gear impact, to benefit from trawling for feeding, to escape gear, to get caught by the net and to resist trawling/dredging action, each of these characteristics being either advantageous or sensitive to trawling. To expand this approach to that proposed by Certain et al. (2015), the protection status of certain species was also indicated. To enable quantitative analysis, a score was assigned to each category: from low sensitivity (0) to high sensitivity (3). Biological traits of species have been defined, from the BIOTIC database (MARLIN, 2014) and from information given by Garcia (2010), Le Pape et al. (2007) and Brind’Amour et al. (2009). For missing traits, additional information from literature has been considered. The protection status of each taxa was also scored: Atlantic species listed in OSPAR List of Threatened and/or Declining Species and Habitats (https://www.ospar.org/work-areas/bdc/species-habitats/list-of-threatened-declining-species-habitats) and Mediterranean species listed in Vulnerable Marine Ecosystems (FAO, 2018 and Oceana, 2017) were scored 3 and other species were scored 1. The scores of 1085 taxa commonly found in bottom trawl by-catch in the southern North Sea, English Channel and north-western Mediterranean were described.
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Serveur wms du projet CHARM II
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New results acquired in south-Brittany (MD08-3204 CQ core: Bay of Quiberon and VK03-58bis core: south Glénan islands) allow depicting Holocene paleoenvironmental changes from 8.5 ka BP to present through a multi-proxy dataset including sedimentological and palynological data. First, grain-size analyses and AMS-14C dates highlight a common sedimentary history for both study cores. The relative sea level (RSL) slowdown was accompanied by a significant drop of the sedimentation rates between ca. 8.3 and 5.7 ka BP, after being relatively higher at the onset of the Holocene. This interval led to the establishment of a shell-condensed level, identified in core VK03-58bis by the “Turritella layer” and interpreted as a marker for the maximum flooding surface. Palynological data (pollen grains and dinoflagellate cyst assemblages) acquired in core MD08-3204 CQ argue for an amplification of the fluvial influence since 5.7 ka BP; the establishment of the highstand system tract (i.e., mixed marine and fluviatile influences on the platform) then accompanying the slowdown of the RSL rise-rates. On the shelf, the amplification of Anthropogenic Pollen Indicators (API) is then better detected since 4.2 ka BP, not only due to human impact increase but also due to a stronger fluvial influence on the shelf during the Late Holocene. Palynological data, recorded on the 8.5–8.3 ka BP interval along an inshore-offshore gradient, also demonstrate the complexity of the palynological signal such as i) the fluvial influence that promotes some pollinic taxa (i.e., Corylus, Alnus) from proximal areas and ii) the macro-regionalization of palynomorph sources in distal cores. In addition, the comparison of palynological tracers, including API, over the last 7 kyrs, with south-Brittany coastal and mid-shelf sites subjected to northern vs. southern Loire catchment areas, allowed discussing a major hydro-climatic effect on the reconstructed palynological signals. Strengthened subpolar gyre dynamics (SPG), combined with recurrent positive North Atlantic Oscillation (NAO) configurations, appear responsible for increased winter precipitations and fluvial discharges over northern Europe, such as in Brittany. Conversely, weakened SPG intervals, associated with negative NAO-like modes, are characterized by intensified winter fluvial discharges over southern Europe. Interestingly, we record, at an infra-orbital timescale, major peaks of API during periods of strengthened (/weakened) SPG dynamics in sites subjects to Brittany watersheds (/Loire watersheds) inputs.
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French Zostera Marina et Zostera Noltei abundance data are collected during monitoring surveys on the English Channel / Bay of Biscay coasts. Protocols are impletmented in the Water Framework Directive. Data are transmitted in a Seadatanet format (CDI + ODV) to EMODnet Biology european database. 35 ODV files have been generated from period 01/01/2004 to 31/12/2021 for Z. Marina and from 01/01/2011 to 31/12/2021 for Z. Noltei.
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French benthic invertebrates composition and abundance taxa data are collected during monitoring surveys on the English Channel / Bay of Biscay coasts and Mediterranean coast (Quadrige program code : REBENT_FAU, RSL_FAU). Protocols are implemented in the Water Framework Directive. Data are transmitted in a Seadatanet format (CDI + ODV) to EMODnet Biology european database. 498 ODV files have been generated from period 01/01/2003 to 31/12/2021.
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This dataset provides Level 4 total current including geostrophy and a data-driven approach for Ekman and near-inertial current, based on a convolution between drifter observation and wind history, to fit empirically a complex and time-lag dependant transfert function between ERA5 wind stress and current The data are available through HTTP and FTP; access to the data is free and open. In order to be informed about changes and to help us keep track of data usage, we encourage users to register at: https://forms.ifremer.fr/lops-siam/access-to-esa-world-ocean-circulation-project-data/ This dataset was generated by Datlas and is distributed by Ifremer / CERSAT in the frame of the World Ocean Circulation (WOC) project funded by the European Space Agency (ESA).
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The ESA Sea State Climate Change Initiative (CCI) project has produced global multi-sensor time-series of along-track satellite synthetic aperture radar (SAR) significant wave height (SWH) data (referred to as SAR WV onboard Sentinel-1 Level 2P (L2P) SWH data) with a particular focus for use in climate studies. This dataset contains the Sentinel-1 SAR Remote Sensing Significant Wave Height product (version 1.0), which is part of the ESA Sea State CCI Version 3.0 release. This product provides along-track SWH measurements at 20km resolution every 100km, processed using the Quach et al statistical model , separated per satellite and pass, including all measurements with flags, corrections and extra parameters from other sources. These are expert products with rich content and no data loss. The SAR Wave Mode data used in the Sea State CCI dataset v3 come from Sentinel-1 satellite missions spanning from 2015 to 2021 (Sentinel-1 A, Sentinel-1 B).
Catalogue PIGMA