2022
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Understanding the dynamics of species interactions for food (prey-predator, competition for resources) and the functioning of trophic networks (dependence on trophic pathways, food chain flows, etc.) has become a thriving ecological research field in recent decades. This empirical knowledge is then used to develop population and ecosystem modelling approaches to support ecosystem-based management. The TrophicCS data set offers spatialized trophic information on a large spatial scale (the entire Celtic Sea continental shelf and upper slope) for a wide range of species. It combines ingested prey (gut content analysis) and a more integrated indicator of food sources (stable isotope analysis). A total of 1337 samples of large epifaunal invertebrates (bivalve mollusks and decapod crustaceans), zooplankton, fish and cephalopods, corresponding to 114 species, were collected and analyzed for stable isotope analysis of their carbon and nitrogen content. Sample size varied between taxa (from 1 to 52), with an average of 11.72 individuals sampled per species, and water depths ranged from 57 to 516 m. The gut contents of 1026 fish belonging to ten commercially important species: black anglerfish (Lophius budegassa), white anglerfish (Lophius piscatorius), blue whiting (Micromesistius poutassou), cod (Gadus morhua), haddock (Melanogrammus aeglefinus), hake (Merluccius merluccius), megrim (Lepidorhombus whiffiagonis), plaice (Pleuronectes platessa), sole (Solea solea) and whiting (Merlangius merlangus) were analyzed. The stomach content data set contains the occurrence of prey in stomach, identified to the lowest taxonomic level possible. To consider potential ontogenetic diet changes, a large size range was sampled. The TrophicCS data set was used to improve understanding of trophic relationships and ecosystem functioning in the Celtic Sea. When you use the data in your publication, we request that you cite this data paper. If you use the present data set (TrophicCS) for the majority of the data analyzed in your study, you may wish to consider inviting at least one author of the core team of this data paper to become a collaborator /coauthor of your paper.
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This dataset provides Level 4 total current including geostrophy and a data-driven approach for Ekman and near-inertial current, based on a convolution between drifter observation and wind history, to fit empirically a complex and time-lag dependant transfert function between ERA5 wind stress and current The data are available through HTTP and FTP; access to the data is free and open. In order to be informed about changes and to help us keep track of data usage, we encourage users to register at: https://forms.ifremer.fr/lops-siam/access-to-esa-world-ocean-circulation-project-data/ This dataset was generated by Datlas and is distributed by Ifremer / CERSAT in the frame of the World Ocean Circulation (WOC) project funded by the European Space Agency (ESA).
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The ESA Sea State Climate Change Initiative (CCI) project has produced global multi-sensor time-series of along-track satellite synthetic aperture radar (SAR) integrated sea state parameters (ISSP) data from ENVISAT (referred to as SAR Wave Mode onboard ENVISAT Level 2P (L2P) ISSP data) with a particular focus for use in climate studies. This dataset contains the ENVISAT Remote Sensing Integrated Sea State Parameter product (version 1.1), which forms part of the ESA Sea State CCI version 3.0 release. This product provides along-track significant wave height (SWH) measurements at 5km resolution every 100km, processed using the Li et al., 2020 empirical model, separated per satellite and pass, including all measurements with flags and uncertainty estimates. These are expert products with rich content and no data loss. The SAR Wave Mode data used in the Sea State CCI SAR WV onboard ENVISAT Level 2P (L2P) ISSP v3 dataset come from the ENVISAT satellite mission spanning from 2002 to 2012.
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This dataset provides detections of fronts derived from low resolution optimally interpolated remote sensing microwave SST L4 from REMSS over North Atlantic region. The data are available through HTTP and FTP; access to the data is free and open. In order to be informed about changes and to help us keep track of data usage, we encourage users to register at: https://forms.ifremer.fr/lops-siam/access-to-esa-world-ocean-circulation-project-data/ This dataset was generated by OceanDataLab and is distributed by Ifremer / CERSAT in the frame of the World Ocean Circulation (WOC) project funded by the European Space Agency (ESA).
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Raw reads for the assembly of Gambusia holbrooki genome.
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We genotyped 1680 thornback ray Raja clavata sampled in the Bay of Biscay using a DNA chip described in Le Cam et al. (2019). After quality control 4604 SNPs were retained for identifying potential sex-linked SNPs using three methods: i) identification of excess of heterozygotes in one sex, ii) FST outlier analysis between the two sexes and iii) neuronal net modelling. Genotype coding: 0 homozygous for major allele, 1 heterozygous, 2 homozygous for minor allele. Flanking DNA sequences of SNPs identified with methods i) and ii) are also provided.
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Wave impact is the primary cause of coastal structure failure. While wave impact is widely studied in controlled environments, in situ measurements of wave impact pressure are rare. The results of a campaign to measure wave impact pressure in situ are summarised here. Data were collected from 2016 to 2019 from anchored pressure gauges on the wall of the Artha breakwater in southwestern France. The acquisition frequency is 10 kHz and 10-minute bursts are recorded every hour. Two databases are published, one by burst and one by impact. The burst database summarises the main parameters describing the 10-minute record, while the impact database contains a list of parameters describing each impact.
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The ESA Sea State Climate Change Initiative (CCI) project has produced global multi-sensor time-series of along-track satellite altimeter significant wave height data (referred to as Level 2P (L2P) data) with a particular focus for use in climate studies. This dataset contains the Version 3 Remote Sensing Significant Wave Height product, which provides along-track data at approximately 6 km spatial resolution, separated per satellite and pass, including all measurements with flags, corrections and extra parameters from other sources. These are expert products with rich content and no data loss. The altimeter data used in the Sea State CCI dataset v3 come from multiple satellite missions spanning from 2002 to 2022021 (Envisat, CryoSat-2, Jason-1, Jason-2, Jason-3, SARAL, Sentinel-3A), therefore spanning over a shorter time range than version 1.1. Unlike version 1.1, this version 3 involved a complete and consistent retracking of all the included altimeters. Many altimeters are bi-frequency (Ku-C or Ku-S) and only measurements in Ku band were used, for consistency reasons, being available on each altimeter but SARAL (Ka band).
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In order to better characterize the genetic diversity of Cetaceans and especially the common Dolphin from the Bay of Biscay, sequences from the mitochondrial Cytochrome B region were obtained from water samples acquired close to groups of dolphins.
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The Level 4 merged microwave wind product is a complete set of hourly global 10-m wind maps on a 0.25x0.25 degree latitude-longitude grid, spanning 1 Jan 2010 through the end of 2020. The product combines background neutral equivalent wind fields from ERA5, daily surface current fields from CMEMS, and stress equivalent winds obtained from several microwave passive and active sensors to produce hourly surface current relative stress equivalent wind analyses. The satellite winds include those from recently launched L-band passive sensors capable of measuring extreme winds in tropical cyclones, with little or no degradation from precipitation. All satellite winds used in the analyses have been recalibrated using a large set of collocated satellite-SFMR wind data in storm-centric coordinates. To maximize the use of the satellite microwave data, winds within a 24-hour window centered on the analysis time have been incorporated into each analysis. To accomodate the large time window, satellite wind speeds are transformed into deviations from ERA5 background wind speeds interpolated to the measurement times, and then an optical flow-based morphing technique is applied to these wind speed increments to propagate them from measurement to analysis time. These morphed wind speed increments are then added to the background wind speed at the analysis time to yield a set of total wind speeds fields for each sensor at the analysis time. These individual sensor wind speed fields are then combined with the background 10-m wind direction to yield vorticity and divergence fields for the individual sensor winds. From these, merged vorticity and divergence fields are computed as a weighted average of the individual vorticity and divergence fields. The final vector wind field is then obtained directly from these merged vorticity and divergence fields. Note that one consequence of producing the analyses in terms of vorticity and divergence is that there are no discontinuities in the wind speed fields at the (morphed) swath edges. There are two important points to be noted: the background ERA5 wind speed fields have been rescaled to be globally consistent with the recalibrated AMSR2 wind speeds. This rescaling involves a large increase in the ERA5 background winds beyond about 17 m/s. For example, an ERA5 10 m wind speed of 30 m/s is transformed into a wind speed of 41 m/s, and a wind speed of 34 m/s is transformed into a wind speed of about 48 m/s. Besides the current version of the product is calibrated for use within tropical cyclones and is not appropriate for use elsewhere. This dataset was produced in the frame of ESA MAXSS project. The primary objective of the ESA Marine Atmosphere eXtreme Satellite Synergy (MAXSS) project is to provide guidance and innovative methodologies to maximize the synergetic use of available Earth Observation data (satellite, in situ) to improve understanding about the multi-scale dynamical characteristics of extreme air-sea interaction.
Catalogue PIGMA