2025
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This visualization product displays the density of floating micro-litter per net normalized in grams per km² per year from specific protocols different from research and monitoring protocols. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10). A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter. European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization. A filter is applied to represent only micro-litter sampled according to a very specific protocol such as the Volvo Ocean Race (VOR) or Oceaneye. Densities were calculated for each net using the following calculation: Density (weight of particles per km²) = Micro-litter weight / (Sampling effort (km) * Net opening (cm) * 0.00001) When the weight of microlitters or the net opening was not filled, it was not possible to calculate the density. Percentiles 50, 75, 95 & 99 have been calculated taking into account data for all years. Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area.
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The flat oyster Ostrea edulis is a European native species that once covered vast areas in the North Sea, on the Atlantic coast and in other European coastal waters including the Mediterranean region. All these populations have been heavily fished by dredging over the last three centuries. More recently, the emergence of parasites combined with the proliferation of various predators and many human-induced additional stressors have caused a dramatic decrease in the last remaining flat oyster populations. Today, this species has disappeared from many locations in Europe and is registered on the OSPAR (Oslo-Paris Convention for the Protection of the Marine environment of the North-East Atlantic) list of threatened and/or declining species (see https://www.ospar.org/work-areas/bdc/species-habitats/list-of-threatened-declining-species-habitats). In that context, since 2018, the Flat Oyster REcoVERy project (FOREVER) has been promoting the reestablishment of native oysters in Brittany (France). This multi-partner project, involving the CRC (Comité Régional de la Conchyliculture), IFREMER (Institut Français de Recherche pour l’Exploitation de la Mer), ESITC (École Supérieure d’Ingénieurs des Travaux de la Construction) Caen and Cochet Environnement, has consisted of (1) inventorying and evaluating the status of the main wild flat oyster populations across Brittany, (2) making detailed analysis of the two largest oyster beds in the bays of Brest and Quiberon to improve understanding of flat oyster ecology and recruitment variability and to suggest possible ways of improving recruitment, and (3) proposing practical measures for the management of wild beds in partnership with members of the shellfish industry and marine managers. the final report of this project is available on Archimer : https://doi.org/10.13155/79506. This survey is part of the task 1 of the FOREVER, which took place between 2017-2021. Some previous data, acquired with the same methodology and within the same geographic area have been also added to this dataset. These data were collected during 30 intertidal and diving surveys in various bays and inlets of the coast of Bretagne. The localization of these surveys has been guided by the help of historical maps. In the field, the methodology was simple enough to be easily implemented regardless of the configuration of the sampled site. The intertidal survey was conducted at very low tide (tidal range > 100) to sample the 0-1m level. Sampling was carried out randomly or systematically following the low water line. Where possible (in terms of visibility and accessibility), dive surveys were also carried out (0-10m depth), along 100m transects, using the same methodology of counting in a 1m2 quadrat. As often as possible, geo-referenced photographs were taken to show the appearance, density and habitat where Ostrea edulis was present. All these pictures are available in the image bank file. Overall, this dataset contains a total of 300 georeferenced records, where flat oysters have been observed. The dataset file contains also information concerning the surrounding habitat description and is organized according the OSPAR recommendations. This publication gives also a map, under a kml format showing each occurrence and its characteristics. This work was done in the framework of the following research project: " Inventaire, diagnostic écologique et restauration des principaux bancs d’huitres plates en Bretagne : le projet FOREVER. Contrat FEAMP 17/2215675".
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This visualization product displays the location of all the surveys present in the EMODnet marine litter database (MLDB). The different fishing gears used are represented by different colors. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during bottom trawl surveys. Unlike other EMODnet seafloor litter products, all trawls surveyed since 2006 are included in this map even if the wingspread and/or the distance are unknown. Only surveys with an unknown number of items were excluded from this product. More information on data processing and calculation are detailed in the attached document. Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the Marine Litter Database for this area.
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This visualization product displays the cigarette related items abundance of marine macro-litter (> 2.5cm) per beach per year from non-MSFD monitoring surveys, research & cleaning operations without UNEP-MARLIN data. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale. Preliminary processings were necessary to harmonize all the data: - Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring; - Selection of surveys from non-MSFD monitoring, cleaning and research operations; - Exclusion of beaches without coordinates; - Selection of plastic bags related items only. The list of selected items is attached to this metadata. This list was created using EU Marine Beach Litter Baselines, the European Threshold Value for Macro Litter on Coastlines and the Joint list of litter categories for marine macro-litter monitoring from JRC (these three documents are attached to this metadata); - Exclusion of surveys without associated length; - Normalization of survey lengths to 100m & 1 survey / year: in some case, the survey length was not 100m, so in order to be able to compare the abundance of litter from different beaches a normalization is applied using this formula: Number of plastic bags related items of the survey (normalized by 100 m) = Number of plastic bags related items of the survey x (100 / survey length) Then, this normalized number of plastic bags related items is summed to obtain the total normalized number of plastic bags related items for each survey. Finally, the median abundance of plastic bags related items for each beach and year is calculated from these normalized abundances of plastic bags related items per survey. Percentiles 50, 75, 95 & 99 have been calculated taking into account plastic bags related items from other sources data for all years. More information is available in the attached documents. Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the Marine Litter Database for this area.
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This daily High-Resolution (HR) Level 3 gridded wind product is derived from Copernicus Sentinel-1 SAR (Synthetic Aperture Radar) observations, over the North Western Atlantic ("ATL" area). It is based on the European Space Agency (ESA) Level-2 OCN products at the highest available resolution. Although L2-OCN products already contain wind vectors, those are calculated using the CMOD5.n Geophysical Model Function (GMF) applied to the co-polarized (co-pol) VV channel (emitting in Vertical polarization and receiving in Vertical polarization). This VV GMF was mapped from scatterometer sensors (Hersbach et al., 2007) which are only able to use co-pol measurements. However, these co-pol GMF are known to lose sensitivity for wind above 20 m/s. Therefore, wind based on such GMF alone, are known to under-estimate wind speed (Polverari et al., 2022). For the L3 products winds based on SAR, we take advantage of the available cross-polarized (cross-pol) VH channel (emitting in Vertical polarization and receiving in Horizontal polarization) for which GMF were specifically derived based on C-Band SAR (Mouche et al., 2017, Mouche et al., 2019). Winds estimated from the combination of both the co-pol and cross-pol channels are referred to as dual-polarization (or dual-pol) winds. As shown in Mouche et al. (2019), taking advantage of the dual polarization strongly improves the wind estimation for high wind conditions thanks to the much greater VH channel sensitivity compared to VV. These new wind estimations are then gridded with a 0.012 degree resolution (between 0.5 and 1.2 km in zonal direction depending on the latitude and 1.3 km in meridional direction) using a cylindrical equidistant projection, independently for ascending and descending satellite passes and for each satellite (so 4 wind fields are available per day for two satellites). This dataset is generated over all Sentinel-1 mission time series starting from March 2018 and updated in delayed mode with a 4-months delay. It is also produced for 4 other different European areas. This dataset is produced and disseminated in the frame of Copernicus Marine Service.
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In order to better characterize the population structure of common dolphins (Delphinus delphis) in the Bay of Biscay, a single digest RADseq (SbfI enzyme) protocol was used to obtain paired-end, 150bp NGS sequences on the Illumina NovaSeq 6000 sequencing platform. D. delphis samples from the Western North Atlantic, and samples from three other delphinid species were included as outgroups.
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Moving 6-year analysis of Water body dissolved oxygen concentration in the Mediterranean Sea for each season: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Every year of the time dimension corresponds to the 6-year centered average of the season. 6-years periods span from 1970-1975 until 2019-2024. Description of DIVA analysis: The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.12, using GEBCO 30sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps grids is dx=dy=0.125 degrees (around 13.5km and 10.9km accordingly). The vertical resolution is 27 depth levels: [0.,5.,10.,20.,30.,50.,75.,100.,125.,150.,200.,250.,300.,400.,500.,600.,700.,800.,900.,1000.,1100.,1200.,1300.,1400.,1500.,1750.,2000.]. The horizontal correlation length is 200km. The vertical correlation length (in meters) was set twices the vertical resolution: [10.,10.,20.,20.,40.,50.,50.,50.,50.,100.,100.,100.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,200.,500.,500.,500.]. Duplicates check was performed using the following criteria for space and time: dlon=0.001deg., dlat=0.001deg., ddepth=1m, dtime=1hour, dvalue=0.1. The error variance (epsilon2) was set equal to 1 for profiles and 10 for time series to reduce the influence of close data near the coasts. An anamorphosis transformation was applied to the data (function DIVAnd.Anam.loglin) to avoid unrealistic negative values: threshold value=200. A background analysis field was used for all years (1970-2024) with correlation length equal to 600km and error variance (epsilon2) equal to 20. Quality control of the observations was applied using the interpolated field (QCMETHOD=3). Residuals (differences between the observations and the analysis (interpolated linearly to the location of the observations) were calculated. Observations with residuals outside the minimum and maximum values of the 99% quantile were discarded from the analysis. Originators of Italian data sets-List of contributors: - Brunetti Fabio (OGS) - Cardin Vanessa, Bensi Manuel doi:10.6092/36728450-4296-4e6a-967d-d5b6da55f306 - Cardin Vanessa, Bensi Manuel, Ursella Laura, Siena Giuseppe doi:10.6092/f8e6d18e-f877-4aa5-a983-a03b06ccb987 - Cataletto Bruno (OGS) - Cinzia Comici Cinzia (OGS) - Civitarese Giuseppe (OGS) - DeVittor Cinzia (OGS) - Giani Michele (OGS) - Kovacevic Vedrana (OGS) - Mosetti Renzo (OGS) - Solidoro C.,Beran A.,Cataletto B.,Celussi M.,Cibic T.,Comici C.,Del Negro P.,De Vittor C.,Minocci M.,Monti M.,Fabbro C.,Falconi C.,Franzo A.,Libralato S.,Lipizer M.,Negussanti J.S.,Russel H.,Valli G., doi:10.6092/e5518899-b914-43b0-8139-023718aa63f5 - Celio Massimo (ARPA FVG) - Malaguti Antonella (ENEA) - Fonda Umani Serena (UNITS) - Bignami Francesco (ISAC/CNR) - Boldrini Alfredo (ISMAR/CNR) - Marini Mauro (ISMAR/CNR) - Miserocchi Stefano (ISMAR/CNR) - Zaccone Renata (IAMC/CNR) - Lavezza, R., Dubroca, L. F. C., Ludicone, D., Kress, N., Herut, B., Civitarese, G., Cruzado, A., Lefèvre, D.,Souvermezoglou, E., Yilmaz, A., Tugrul, S., and Ribera d'Alcala, M.: Compilation of quality controlled nutrient profiles from the Mediterranean Sea, doi:10.1594/PANGAEA.771907, 2011.
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Particularly suited to the purpose of measuring the sensitivity of benthic communities to trawling, a trawl disturbance indicator (de Juan and Demestre, 2012, de Juan et al. 2009) was proposed based on benthic species life history traits to evaluate the sensibility of mega- and epifaunal community to fishing pressure known to have a physical impact on the seafloor (such as dredging and bottom trawling). The selected biological traits were chosen as they determine vulnerability to trawling: mobility, fragility, position on substrata, average size and feeding mode that can easily be related to the fragility, recoverability and vulnerability ecological concepts. Life history traits of species have been defined from the BIOTIC database (MARLIN, 2014) and from information given by Le Pape et al. (2007), Brindamour et al. (2009) and Garcia (2010). For missing life history traits, additional information from literature has been considered. The five categories retained are life history functional traits that were selected based on the knowledge of the response of benthic taxa to trawling disturbance (de Juan and Demestre, 2012). They reflect respectively the possibility to avoid direct gear impact, to benefit from trawling for feeding, to escape gear, to get caught by the net and to resist trawling/dredging action, each of these characteristics being either advantageous or sensitive to trawling. Then, to allow quantitative analysis, a score was assigned to each category: from low vulnerability (0) to high vulnerability (3). The five categories scores were then summed for each taxon (the highly vulnerable taxon could reach the maximum score is 15) and this value may be considered as a species index of sensitivity to trawling disturbance. The scores of 812 taxa commonly found in bottom trawl by-catch in the southern North Sea, English Channel and north-western Mediterranean were described.
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Moving 6-year analysis and visualization of Water body silicate in the North Sea. Four seasons (December-February, March-May, June-August, September-November). Data Sources: observational data from SeaDataNet/EMODnet Chemistry Data Network. Description of DIVA analysis: Geostatistical data analysis by DIVAnd (Data-Interpolating Variational Analysis) tool, version 2.7.12. results were subjected to the minfield option in DIVAnd to avoid negative/underestimated values in the interpolated results; error threshold masks L1 (0.3) and L2 (0.5) are included as well as the unmasked field. The depth dimension allows visualizing the gridded field at various depths.
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Seasonal climatology of Water body silicate for Loire river for the period 1950-2024 and for the following seasons: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Observation data span from 1950 to 2024. Depth levels (m): [0.0, 2.0, 4.0, 6.0, 8.0, 10.0, 15.0, 20.0, 25.0, 30.0, 35.0, 40.0, 45.0, 50.0, 60.0, 70.0, 80.0, 90.0, 100.0, 110.0, 120.0, 130.0]. Data sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Description of DIVAnd analysis: the computation was done with DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.12, using GEBCO 15 sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps is 0.01 degrees. Horizontal correlation length is defined seasonally (in meters): 133000 (winter), 180000 (spring), 150000 (summer), 210000 (autumn). Vertical correlation length was optimized and vertically filtered and a seasonally-averaged profile was used (DIVAnd.fitvertlen). Signal-to-noise ratio was fixed to 1 for vertical profiles and 0.1 for time series to account for the redundancy in the time series observations. A logarithmic transformation (DIVAnd.loglin) was applied to the data prior to the analysis. Background field: the vertically-filtered data mean profile is substracted from the data. Detrending of data: no, advection constraint applied: no. Units: umol/l.
Catalogue PIGMA