This dataset contains the biological outputs of a global ocean simulation coupling dynamics and biogeochemistry at ¼° over the year 2019. The simulation has been performed using the coupled circulation/ecosystem model NEMO/PISCES (https://www.nemo-ocean.eu/), which is here enhanced to perform an ensemble simulation with explicit simulation of modeling uncertainties in the physics and in the biogeochemistry. This dataset is one of the 40 members of the ensemble simulation. This study was part of the Horizon Europe project SEAMLESS (https://seamlessproject.org/Home.html), with the general objective of improving the analysis and forecast of ecosystem indicators.   See Popov et al. (https://os.copernicus.org/articles/20/155/2024/) for more details on the study.

In order to better characterize the population structure of common dolphins (Delphinus delphis) in the Bay of Biscay, a single digest RADseq (SbfI enzyme) protocol was used to obtain paired-end, 150bp NGS sequences on the Illumina NovaSeq 6000 sequencing platform. D. delphis samples from the Western North Atlantic, and samples from three other delphinid species were included as outgroups.

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification, contaminants and litter. The chosen parameters are relevant for the Marine Strategy Framework Directive (MSFD), in particular for descriptors 5, 8, 9 and 10. The dataset contains standardized, harmonized and validated data collections from beach litter (monitoring and other sources). Datasets concerning beach and seafloor litter data are loaded in a central database after a semi-automated validation phase. Once loaded, a data assessment is performed in order to check data consistency and potential errors are corrected thanks to a feedback loop with data originators. For beach litter, the harmonized datasets contain all unrestricted EMODnet Chemistry data on beach litter, including monitoring data, data from cleaning surveys and data from research. A relevant part of the monitoring data has been considered for assessment purposes by the European institutions and therefore is tagged as MSFD_monitoring. EMODnet beach litter data and databases are hosted and maintained by 'Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)' from Italy. Data are formatted following Guidelines and forms for gathering marine litter data, which can be found at: https://doi.org/10.6092/15c0d34c-a01a-4091-91ac-7c4f561ab508 The updated vocabularies of admitted values are available at: https://nodc.ogs.it/marinelitter/vocab The European harmonized dataset is provided as csv format in two files, one containing the survey data and one containing the survey metadata. The dataset is available through direct download or through ERDDAP.

The network was initiated by IFREMER from 1993 to 2009 (under the acronym REMORA) to study the rearing performance of the Pacific oyster Crassostrea gigas at a national scale. To do so, the network monitored annually the mortality and growth of standardized batches of 18-month-old oysters. Starting in 1995, the monitoring of the rearing performance of 6-month-old oyster spat was integrated into this network. These sentinel batches were distributed simultaneously each year on 43 sites and were monitored quarterly. These sites were distributed over the main French oyster farming areas and allowed a national coverage of the multiannual evolution of oyster farming performances. Most of the sites were located on the foreshore at comparable levels of immersion. Field studies were carried out by the "Laboratoires Environnement Ressources" (LER) for the sites included in their geographical area of investigation. Following the increase in spat mortality in 2008, the network evolved in 2009 (under the acronym RESCO). From this date, the network selected 13 sites among the 43 sites previously monitored in order to increase the frequency of visits (twice a month) and the number of sentinel batches. More precisely, sentinel batches of oysters corresponding to different origins (wild or hatchery, diploid or triploid) and to two rearing age classes (spat or 18-month-old adults) were selected. The monitoring of environmental variables (temperature, salinity) associated with the 13 sites was also implemented. The actions of the network have thus contributed to disentangle the biotic and abiotic parameters involved in mortality phenomena, taking into account the different compartments (environment / host / infectious agents) likely to interact with the evolution of oyster rearing performance. Finally, since 2015, the network has merged the RESCO and VELYGER networks to adopt the acronym ECOSCOPA. The general objective of this current network is to analyze the causes of spatio-temporal variability of the main life traits (Larval stage - Recruitment - Reproduction - Growth - Survival - Cytogenetic abnormalities) of the cupped oyster in France and to follow their evolution on the long term in the context of climate change. To do this, the network proposes a regular spatio-temporal monitoring of the major proxies of the life cycle of the oyster, organized in three major thematic groups: (1) proxies related to growth, physiological tolerance and survival of experimental sentinel populations over 3 age classes: (2) proxies related to reproduction, larval phase and recruitment of the species throughout its natural range in France, and: (3) proxies related to environmental parameters essential to the species (weather conditions, temperature, salinity, pH, turbidity, chlorophyll a and phytoplankton) at daily or sub-hourly frequencies. Working in a geographical network associating several laboratories, ECOSCOPA provide these monitoring within 8 sites selected among the previous ones to ensure the continuity of the data acquisition. Today, these 8 sites are considered as ecosystems of common interest, contrasted, namely : - The Thau lagoon - The Arcachon basin - The Marennes Oléron basin - The Bourgneuf Bay - The bay of Vilaine - The bay of Brest - The bay of Mont Saint Michel - The bay of Veys The ECOSCOPA network is therefore one of the relevant monitoring tools on a national scale, allowing to objectively measure through different proxies the general state of health of cultivated and wild oyster populations, and this for the different sensitive phases of their life cycle. This network aims at allowing a better evaluation, on the long term, of the biological risks incurred by the sector but also by the ecosystems, in particular under the increasing constraint of climatic and anthropic changes. Figure : Sites monitored by the ECOSCOPA network  

C-RAID: Comprehensive Reprocessing of Drifting Buoy Data (1979-2018) The C-RAID (Copernicus - Reprocessing of Drifting Buoys) project delivers a comprehensive global reprocessing of historical drifting buoy data and metadata, providing climate-quality observations for marine and atmospheric research. Dataset Overview The C-RAID dataset encompasses metadata from 21 858 drifting buoys deployed between 1979 and 2018. Of these, 17 496 buoys have undergone complete reprocessing with scientific validation in delayed mode, including comparison against ERA5 reanalysis. Project Context Managed by the WMO DBCP Drifting Buoys Global Data Assembly Centre (GDAC) through Ifremer, Météo-France, and Ocean Sciences Division of Fisheries and Oceans Canada, C-RAID focuses on enhanced quality control and delivery of climate-quality drifting buoy data for the Marine Climate Data System (MCDS). Objectives - Complete reprocessing and clean-up of the historical drifting buoy data archive - Recovery and rescue of missing datasets - Reprocessing of Argos data with improved positioning using Kalman filter algorithms - Homogenization of quality control procedures across marine and atmospheric parameters Funding & Governance C-RAID was funded by the Copernicus Programme through the European Environment Agency (Contract # EEA/IDM/15/026/LOT1), supporting cross-cutting coordination activities for the in-situ component of Copernicus Services. Stakeholders & Partnerships The project is led by the DB-GDAC consortium (Ifremer, Météo-France) in collaboration with EUMETNET's E-SURFMAR programme, NOAA AOML, and JCOMMOPS. Key Achievements - Reprocessing of approximately 24 000 buoy-years of observations - Recovery of missing datasets and metadata through data rescue efforts - Implementation of homogeneous, rich metadata and data formats - Enhanced Argos location accuracy using Kalman filter reprocessing - Standardized quality control and validation procedures Data Access & FAIR Principles C-RAID provides FAIR (Findable, Accessible, Interoperable, Reusable) data access through: - Web-based data discovery portal for human users - API services for data discovery, subsetting, and download (machine-to-machine access) Target Users The dataset serves major operational and research programmes including: - Copernicus Climate Change Service (C3S) - Copernicus Marine Environment Monitoring Service (CMEMS) - iQuam (in-situ SST Quality Monitor) - ICOADS (International Comprehensive Ocean-Atmosphere Data Set) - GHRSST (Group for High Resolution Sea Surface Temperature) - ISPD (International Surface Pressure Databank) - ICDC (Integrated Climate Data Center)  

Based on the consolidation of the Ifremer networks RESCO (https://doi.org/10.17882/53007) and VELYGER (https://doi.org/10.17882/41888), the general objective of the ECOSCOPA project is to analyze the causes of spatio-temporal variability of the main life traits (Larval stage - Recruitment - Reproduction - Growth – Survival – Cytogenetic anomalies) of the Pacific oyster in France and follow their evolution over the long term in the context of climate change. The high frequency environmental data are monitored since 2010 at several stations next to oyster farm areas in eight bays of the French coast (from south to north): Thau Lagoon and bays of Arcachon, Marennes Oléron, Bourgneuf, Vilaine, Brest, Mont Saint-Michel and Veys (see map below). Sea temperature and practical salinity are recorded at 15-mins frequency. For several sites, fluorescence and turbidity data are also available. Data are acquired with automatic probes directly put in oyster bags or fixed on metallic structure at 50 cm over the sediment bottom, except for Thau Lagoon whose probes are deployed at 2m below sea surface. Since 2010, several types of probes were used: STP2, STPS, SMATCH or WiSens CTD from NKE (www.nke-instrumentation.fr) and recently ECO FLNTU (www.seabird.com). The probes are regularly qualified by calibrations in the Ifremer coastal laboratories. Precision estimated of the complete data collection process is: temperature (±0.1°C), salinity (±0.5psu), in vivo fluorescence (±10%), turbidity (±10%). The data are qualified into several levels: 0-No Quality Check performed, 1-Good data, 2-Probably good data, 3-Probably bad data, 4-Bad data, 5-Value changed, 7-Nominal value, 8-Interpolated value, 9-Missing value. 

'''DEFINITION''' The temporal evolution of thermosteric sea level in an ocean layer is obtained from an integration of temperature driven ocean density variations, which are subtracted from a reference climatology to obtain the fluctuations from an average field. The products used include three global reanalyses: GLORYS, C-GLORS, ORAS5 (GLOBAL_MULTIYEAR_PHY_ENS_001_031) and two in situ based reprocessed products: CORA5.2 (INSITU_GLO_PHY_TS_OA_MY_013_052) , ARMOR-3D (MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012). Additionally, the time series based on the method of von Schuckmann and Le Traon (2011) has been added. The regional thermosteric sea level values are then averaged from 60°S-60°N aiming to monitor interannual to long term global sea level variations caused by temperature driven ocean volume changes through thermal expansion as expressed in meters (m). '''CONTEXT''' The global mean sea level is reflecting changes in the Earth’s climate system in response to natural and anthropogenic forcing factors such as ocean warming, land ice mass loss and changes in water storage in continental river basins. Thermosteric sea-level variations result from temperature related density changes in sea water associated with volume expansion and contraction (Storto et al., 2018). Global thermosteric sea level rise caused by ocean warming is known as one of the major drivers of contemporary global mean sea level rise (Cazenave et al., 2018; Oppenheimer et al., 2019). '''CMEMS KEY FINDINGS''' Since the year 2005 the upper (0-700m) near-global (60°S-60°N) thermosteric sea level rises at a rate of 1.0 ± 0.2 mm/year. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00239

This delayed mode product designed for reanalysis purposes integrates the best available version of in situ data for ocean surface currents and current vertical profiles. It concerns three delayed time datasets dedicated to near-surface currents measurements coming from three platforms (Lagrangian surface drifters, High Frequency radars and Argo floats) and velocity profiles within the water column coming from the Acoustic Doppler Current Profiler (ADCP, vessel mounted only). The latest version of Copernicus surface and sub-surface water velocity product is also distributed from Copernicus Marine catalogue.

'''DEFINITION''' Important note to users: These data are not to be used for navigation. The data is 100 m resolution and as high quality as possible. It has been produced with state-of-the-art technology and validated to the best of the producer’s ability and where sufficient high-quality data were available. These data could be useful for planning and modelling purposes. The user should independently assess the adequacy of any material, data and/or information of the product before relying upon it. Neither Mercator Ocean International/Copernicus Marine Service nor the data originators are liable for any negative consequences following direct or indirect use of the product information, services, data products and/or data. Product overview: This is a satellite derived bathymetry product covering the global coastal area (where data retrieval is possible), with 100 m resolution, based on Sentinel-2. This global coastal product has been developed based on 3 methodologies: Intertidal Satellite-Derived Bathymetry; Physics-based optical Satellite-Derived Bathymetry from RTE inversion; and Wave Kinematics Satellite-Derived Bathymetry from wave dispersion. There is one dataset for each of the methods (including a quality index based on uncertainty) and an additional one where the three datasets were merged (also includes a quality index). Using their expertise and special techniques the consortium tried to achieve an optimal balance between coverage and data quality. '''DOI (product):''' https://doi.org/10.48670/mds-00364

In October 2019 we chose 15 sites from the 2019 EVHOE survey for environmental DNA (eDNA) sampling. The French international EVHOE bottom trawl survey is carried out annually during autumn in the BoB to monitor demersal fish resources. At each site, we sampled seawater using Niskin bottles deployed with a circular rosette. There were nine bottles on the rosette, each of them able to hold ∼5 l of water. At each site, we first cleaned the circular rosette and bottles with freshwater, then lowered the rosette (with bottles open) to 5 m above the sea bottom, and finally closed the bottles remotely from the boat. The 45 l of sampled water was transferred to four disposable and sterilized plastic bags of 11.25 l each to perform the filtration on-board in a laboratory dedicated to the processing of eDNA samples. To speed up the filtration process, we used two identical filtration devices, each composed of an Athena® peristaltic pump (Proactive Environmental Products LLC, Bradenton, Florida, USA; nominal flow of 1.0 l min–1 ), a VigiDNA 0.20 μm filtration capsule (SPYGEN, le Bourget du Lac, France), and disposable sterile tubing. Each filtration device filtered the water contained in two plastic bags (22.5 l), which represent two replicates per sampling site. We followed a rigorous protocol to avoid contamination during fieldwork, using disposable gloves and single-use filtration equipment and plastic bags to process each water sample. At the end of each filtration, we emptied the water inside the capsule that we replaced by 80 ml of CL1 conservation buffer and stored the samples at room temperature following the specifications of the manufacturer (SPYGEN, Le Bourget du Lac, France). We processed the eDNA capsules at SPYGEN, following the protocol proposed by Polanco-Fernández et al., (2020). Half of the extracted DNA was processed by Sinsoma using newly developped ddPCR assays for European seabass (Dicentrachus labrax), European hake (Merluccius merluccius) and blackspot seabream (Pagellus bogaraveo).  The other half of the extracted DNA was analysed using metabarcoding with teleo primer. The raw metabarcoding data set is available at https://www.doi.org/10.16904/envidat.442 Bottom trawling using a GOV trawl was carried out before or after water sampling. The catch was sorted by species and catches in numbers and weight were recorded. No blackspot seabream individuals were caught.   Data content: * ddPCR/: contains the ddPCR counts and DNA concentrations for each sample and species. * SampleInfo/: contains the filter volume for each eDNA sample. * StationInfo/: contains metadata related to the data collected in the field for each filter. * Metabarcoding/: contains metabarcoding results for teleoprimer. * Trawldata/: contains catch data in numbers and weight (kg).