EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification, contaminants and litter. The chosen parameters are relevant for the Marine Strategy Framework Directive (MSFD), in particular for descriptors 5, 8, 9 and 10. The datasets contain standardized, harmonized and validated data collections from seafloor litter. Datasets concerning seafloor litter data are loaded in a central database after a semi-automated validation phase. Once loaded, a data assessment is performed in order to check data consistency and potential errors are corrected thanks to a feedback loop with data originators. EMODnet seafloor litter data and database are hosted and maintained by ‘Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)’ from Italy. For seafloor litter, the harmonized datasets contain all unrestricted EMODnet Chemistry data on seafloor litter data. Data are formatted following Guidelines and forms for gathering marine litter data, which can be found at: https://dx.doi.org/10.6092/15c0d34c-a01a-4091-91ac-7c4f561ab508 The updated vocabularies of admitted values are available at: https://vocab.seadatanet.org/search https://vocab.ices.dk/ The harmonized datasets can be downloaded as EMODnet Sea-floor litter data format version 1.0, which is a csv file, tab separated values.

This visualization product displays the type of litter in percent per net per year from specific protocols different from research and monitoring protocols. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Before 2021, there was no coordinated effort at the regional or European scale for micro-litter. Given this situation, EMODnet Chemistry proposed to adopt the data gathering and data management approach as generally applied for marine data, i.e., populating metadata and data in the CDI Data Discovery and Access service using dedicated SeaDataNet data transport formats. EMODnet Chemistry is currently the official EU collector of micro-litter data from Marine Strategy Framework Directive (MSFD) National Monitoring activities (descriptor 10). A series of specific standard vocabularies or standard terms related to micro-litter have been added to SeaDataNet NVS (NERC Vocabulary Server) Common Vocabularies to describe the micro-litter. European micro-litter data are collected by the National Oceanographic Data Centres (NODCs). Micro-litter map products are generated from NODCs data after a test of the aggregated collection including data and data format checks and data harmonization. A filter is applied to represent only micro-litter sampled according to a very specific protocol such as the Volvo Ocean Race (VOR) or Oceaneye. To calculate percentages for each type, formula applied is: Type (%) = (∑number of particles of each type)*100 / (∑number of particles of all type) When the number of micro-litters was not filled or was equal to zero, it was not possible to calculate the percentage. Standard vocabularies for micro-litter types are taken from Seadatanet's H01 library (https://vocab.seadatanet.org/v_bodc_vocab_v2/search.asp?lib=H01). Some morphological types of micro-litters may have been sampled but were not defined by the protocole applied during the survey. They are represented as « undefined micro-litter items ». Warnings: - the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the National Oceanographic Data Centre (NODC) for this area. - since 03/07/2023, the preferred label « Undefined micro-litter items » has been integrated into the H01 library whereas the labels « microplastic items », « non-plastic man-made micro-particles (e.g. glass, metal, tar) » and «non-plastic filaments (natural fibres, rubber) » have been deprecated. When defined, the material or polymer type can be checked directly in the source data.

Rocch, the french "mussel watch", provides regulatory data for shellfish area quality management. Once a year, molluscs (mainly mussels and oysters) were sampled at fixed periods (currently mid-February, with a tolerance of one tide before and after the target date) on 70 to 80  monitoring stations in areas used as bivalve molluscs production. For each monitoring station, molluscs are collected in wild beds or facilities, ensuring a minimum stay of 6 months on-site before sampling. The individuals selected are adults of a single species and uniform size (30 to 60 mm long for mussels, 2 to 3 years old for oysters, and commercial size for other species). A minimum of 50 mussels (and other species of similar size) or 10 oysters is required to constitute a representative pooled sample. Lead, mercury, cadmium, PAHs, PCBs, dioxins and, since 2023, regulated PFASs are analysed in molluscs tissues.

In the context of contamination of shellfish species by domoic acid produced by microalgal species of the genus Pseudo-nitzschia, we studied the particular case of depuration kinetics of king scallops, Pecten maximus. The study was based on the REPHYTOX dataset (https://doi.org/10.17882/47251) which includes, among others, long-term time series of domoic acid in shellfish species. We selected only the locations along the English Channel and the Atlantic coastline. Contamination events were defined for each locations, depuration rates were estimated fitting an exponential decay model using a non-linear least squares regression. Spatio-temporal variability was assessed as well as correlations to environmental conditions, using REPHY dataset (https://doi.org/10.17882/47248). Finally, scenarios for predictions of either the dynamics of depuration or the domoic acid contamination at a precise date were performed. Four files are available as data used for the study and results : (i) subset of REPHYTOX dataset, (ii) subset of REPHY dataset, used in this study and (iii) contamination event information (i.e., initial and end date of the event, initial domoic acid concentration) and depuration rate estimations, and (iv) predictions of depuration dynamics with different scenarios. Information on each file is detailed in the end user manual and methodology and results are linked to an article in preparation.

The network was initiated by IFREMER from 1993 to 2009 (under the acronym REMORA) to study the rearing performance of the Pacific oyster Crassostrea gigas at a national scale. To do so, the network monitored annually the mortality and growth of standardized batches of 18-month-old oysters. Starting in 1995, the monitoring of the rearing performance of 6-month-old oyster spat was integrated into this network. These sentinel batches were distributed simultaneously each year on 43 sites and were monitored quarterly. These sites were distributed over the main French oyster farming areas and allowed a national coverage of the multiannual evolution of oyster farming performances. Most of the sites were located on the foreshore at comparable levels of immersion. Field studies were carried out by the "Laboratoires Environnement Ressources" (LER) for the sites included in their geographical area of investigation. Following the increase in spat mortality in 2008, the network evolved in 2009 (under the acronym RESCO). From this date, the network selected 13 sites among the 43 sites previously monitored in order to increase the frequency of visits (twice a month) and the number of sentinel batches. More precisely, sentinel batches of oysters corresponding to different origins (wild or hatchery, diploid or triploid) and to two rearing age classes (spat or 18-month-old adults) were selected. The monitoring of environmental variables (temperature, salinity) associated with the 13 sites was also implemented. The actions of the network have thus contributed to disentangle the biotic and abiotic parameters involved in mortality phenomena, taking into account the different compartments (environment / host / infectious agents) likely to interact with the evolution of oyster rearing performance. Finally, since 2015, the network has merged the RESCO and VELYGER networks to adopt the acronym ECOSCOPA. The general objective of this current network is to analyze the causes of spatio-temporal variability of the main life traits (Larval stage - Recruitment - Reproduction - Growth - Survival - Cytogenetic abnormalities) of the cupped oyster in France and to follow their evolution on the long term in the context of climate change. To do this, the network proposes a regular spatio-temporal monitoring of the major proxies of the life cycle of the oyster, organized in three major thematic groups: (1) proxies related to growth, physiological tolerance and survival of experimental sentinel populations over 3 age classes: (2) proxies related to reproduction, larval phase and recruitment of the species throughout its natural range in France, and: (3) proxies related to environmental parameters essential to the species (weather conditions, temperature, salinity, pH, turbidity, chlorophyll a and phytoplankton) at daily or sub-hourly frequencies. Working in a geographical network associating several laboratories, ECOSCOPA provide these monitoring within 8 sites selected among the previous ones to ensure the continuity of the data acquisition. Today, these 8 sites are considered as ecosystems of common interest, contrasted, namely : - The Thau lagoon - The Arcachon basin - The Marennes Oléron basin - The Bourgneuf Bay - The bay of Vilaine - The bay of Brest - The bay of Mont Saint Michel - The bay of Veys The ECOSCOPA network is therefore one of the relevant monitoring tools on a national scale, allowing to objectively measure through different proxies the general state of health of cultivated and wild oyster populations, and this for the different sensitive phases of their life cycle. This network aims at allowing a better evaluation, on the long term, of the biological risks incurred by the sector but also by the ecosystems, in particular under the increasing constraint of climatic and anthropic changes. Figure : Sites monitored by the ECOSCOPA network  

Ensemble simulations of the ecosystem model Apecosm (https://apecosm.org) forced by the IPSL-CM6-LR climate model with the climate change scenario SSP5-8.5. The output files contain yearly mean biomass density for 3 communities (epipelagic, mesopelagic migratory and mesopelagic redidents) and 100 size classes (ranging from 0.12cm to 1.96m) The model grid file is also provided. Units are in J/m2 and can be converted in kg/m2 by dividing by 4e6. These outputs are associated with the "Assessing the time of emergence of marine ecosystems from global to local scales using IPSL-CM6A-LR/APECOSM climate-to-fish ensemble simulations" paper from the Earth's Future "Past and Future of Marine Ecosystems" Special Collection.

This dataset contains the biological outputs of a global ocean simulation coupling dynamics and biogeochemistry at ¼° over the year 2019. The simulation has been performed using the coupled circulation/ecosystem model NEMO/PISCES (https://www.nemo-ocean.eu/), which is here enhanced to perform an ensemble simulation with explicit simulation of modeling uncertainties in the physics and in the biogeochemistry. This dataset is one of the 40 members of the ensemble simulation. This study was part of the Horizon Europe project SEAMLESS (https://seamlessproject.org/Home.html), with the general objective of improving the analysis and forecast of ecosystem indicators.   See Popov et al. (https://os.copernicus.org/articles/20/155/2024/) for more details on the study.

EMODnet Chemistry aims to provide access to marine chemistry data sets and derived data products concerning eutrophication, ocean acidification, contaminants and litter. The chosen parameters are relevant for the Marine Strategy Framework Directive (MSFD), in particular for descriptors 5, 8, 9 and 10. The dataset contains standardized, harmonized and validated data collections from beach litter (monitoring and other sources). Datasets concerning beach and seafloor litter data are loaded in a central database after a semi-automated validation phase. Once loaded, a data assessment is performed in order to check data consistency and potential errors are corrected thanks to a feedback loop with data originators. For beach litter, the harmonized datasets contain all unrestricted EMODnet Chemistry data on beach litter, including monitoring data, data from cleaning surveys and data from research. A relevant part of the monitoring data has been considered for assessment purposes by the European institutions and therefore is tagged as MSFD_monitoring. EMODnet beach litter data and databases are hosted and maintained by 'Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)' from Italy. Data are formatted following Guidelines and forms for gathering marine litter data, which can be found at: https://doi.org/10.6092/15c0d34c-a01a-4091-91ac-7c4f561ab508 The updated vocabularies of admitted values are available at: https://nodc.ogs.it/marinelitter/vocab The European harmonized dataset is provided as csv format in two files, one containing the survey data and one containing the survey metadata. The dataset is available through direct download or through ERDDAP.

The glider operations in the MOOSE network started to be deployed regularly in 2010 in the North Western Mediterranean Sea, thanks to the setup of national glider facilities at DT-INSU/Ifremer (http://www.dt.insu.cnrs.fr/gliders/gliders.php) and with the support of the European project FP7-PERSEUS. Two endurance lines are operated: MooseT00 (Nice-Calvi; Ligurian Sea) and MooseT02 (Marseille-Menorca; Gulf of Lion). The all dataset here corresponds to raw data in the EGO format.

'''DEFINITION''' Estimates of Ocean Heat Content (OHC) are obtained from integrated differences of the measured temperature and a climatology along a vertical profile in the ocean (von Schuckmann et al., 2018). The products used include three global reanalyses: GLORYS, C-GLORS, ORAS5 (GLOBAL_MULTIYEAR_PHY_ENS_001_031) and two in situ based reprocessed products: CORA5.2 (INSITU_GLO_PHY_TS_OA_MY_013_052) , ARMOR-3D (MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012). Additionally, the time series based on the method of von Schuckmann and Le Traon (2011) has been added. The regional OHC values are then averaged from 60°S-60°N aiming i) to obtain the mean OHC as expressed in Joules per meter square (J/m2) to monitor the large-scale variability and change. ii) to monitor the amount of energy in the form of heat stored in the ocean (i.e. the change of OHC in time), expressed in Watt per square meter (W/m2). Ocean heat content is one of the six Global Climate Indicators recommended by the World Meterological Organisation for Sustainable Development Goal 13 implementation (WMO, 2017). '''CONTEXT''' Knowing how much and where heat energy is stored and released in the ocean is essential for understanding the contemporary Earth system state, variability and change, as the ocean shapes our perspectives for the future (von Schuckmann et al., 2020). Variations in OHC can induce changes in ocean stratification, currents, sea ice and ice shelfs (IPCC, 2019; 2021); they set time scales and dominate Earth system adjustments to climate variability and change (Hansen et al., 2011); they are a key player in ocean-atmosphere interactions and sea level change (WCRP, 2018) and they can impact marine ecosystems and human livelihoods (IPCC, 2019). '''CMEMS KEY FINDINGS''' Since the year 2005, the upper (0-700m) near-global (60°S-60°N) ocean warms at a rate of 0.6 ± 0.1 W/m2. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00234