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  • This visualization product displays plastic bags density per trawl. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of seafloor litter collected by international fish-trawl surveys have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols (OSPAR and MEDITS protocols) and reference lists used on a European scale. Moreover, within the same protocol, different gear types are deployed during bottom trawl surveys. In cases where the wingspread and/or number of items were/was unknown, it was not possible to use the data because these fields are needed to calculate the density. Data collected before 2011 are concerned by this filter. When the distance reported in the data was null, it was calculated from: - the ground speed and the haul duration using the following formula: Distance (km) = Haul duration (h) * Ground speed (km/h); - the trawl coordinates if the ground speed and the haul duration were not filled in. The swept area was calculated from the wingspread (which depends on the fishing gear type) and the distance trawled: Swept area (km²) = Distance (km) * Wingspread (km) Densities were calculated on each trawl and year using the following computation: Density of plastic bags (number of items per km²) = ∑Number of plastic bags related items / Swept area (km²) Percentiles 50, 75, 95 & 99 were calculated taking into account data for all years. The list of selected items for this product is attached to this metadata. Information on data processing and calculation is detailed in the attached methodology document. Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the Marine Litter Database for this area.

  • As part of the marine water quality monitoring of the “Pertuis” and the “baie de l’Aiguillon” (France), commissioned by the OFB and carried out by setec énergie environnement, three monitoring stations were installed. Two of them were set up at the mouths of the Charente and Seudre rivers on February 6 and 27, 2019, respectively, while a third was deployed in the Bay of Aiguillon on March 24, 2021. The dataset presented here concerns the station installed in the Charente estuary. Measurements are organized into .csv files, with one file per year. Data is collected using a SAMBAT multiparameter probe, which records the following parameters: - Temperature (-5 to 35 °C) - Conductivity (0 to 10 mS/cm) - Pressure (0 to 10 m) - Turbidity (0 to 300 NTU) - Dissolved Oxygen (0 to 20 mg/L & 0 to 200 %) - Fluorescence (0 to 50 µg/l) - PH (0/14)

  • EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity, contaminants and marine litter. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data on floating micro-litter. This dataset is the result of a validation and harmonisation process of the datasets concerning floating micro-litter present in EMODnet Chemistry. The datasets concerning micro-litter are automatically harvested and the resulting collections are harmonised and validated using ODV Software and following a common methodology for all sea regions. Parameter names are based on P01 vocabulary, which relates to BODC Parameter Usage Vocabulary and is available at: https://vocab.nerc.ac.uk/search_nvs/P01/ This process was performed by ‘Istituto Nazionale di Oceanografia e di Geofisica Sperimentale, Division of Oceanography (OGS/NODC)’ from Italy. Harmonisation means that: (1) unit conversion is carried out to express variables with a limited set of measurement units and (2) merging of variables described by different “local names”, but corresponding exactly to the same concepts in BODC P01 vocabulary. The harmonised dataset can be downloaded as ODV collection that can be opened with ODV software for visualization (More information can be found at: https://www.seadatanet.org/Software/ODV ). The same dataset is offered as spreadsheet (txt format, tab separated values) where the values of the categories for the following reported parameters (type, shape, size, color, transparency and material) have been uniformed as labelled in the SeaDataNet H01, H02, H03, H04, H05, H06 vocabularies (https://vocab.seadatanet.org/search ). This format is more adapted to worksheet applications (e.g. LibreOffice Calc).

  • The Southern Ocean plays a fundamental role in regulating the global climate. This ocean also contains a rich and highly productive ecosystem, potentially vulnerable to climate change. Very large national and international efforts are directed towards the modeling of physical oceanographic processes to predict the response of the Southern Ocean to global climate change and the role played by the large-scale ocean climate processes. However, these modeling efforts are greatly limited by the lack of in situ measurements, especially at high latitudes and during winter months. The standard data that are needed to study ocean circulation are vertical profiles of temperature and salinity, from which we can deduce the density of seawater. These are collected with CTD (Conductivity-Temperature-Depth) sensors that are usually deployed on research vessels or, more recently, on autonomous Argo profilers. The use of conventional research vessels to collect these data is very expensive, and does not guarantee access to areas where sea ice is found at the surface of the ocean during the winter months. A recent alternative is the use of autonomous Argo floats. However, this technology is not easy to use in glaciated areas. In this context, the collection of hydrographic profiles from CTDs mounted on marine mammals is very advantageous. The choice of species, gender or age can be done to selectively obtain data in particularly under-sampled areas such as under the sea ice or on continental shelves. Among marine mammals, elephant seals are particularly interesting. Indeed, they have the particularity to continuously dive to great depths (590 ± 200 m, with maxima around 2000 m) for long durations (average length of a dive 25 ± 15 min, maximum 80 min). A Conductivity-Temperature-Depth Satellite Relay Data Logger (CTD-SRDLs) has been developed in the early 2000s to sample temperature and salinity vertical profiles during marine mammal dives (Boehme et al. 2009, Fedak 2013). The CTD-SRDL is attached to the seal on land, then it records hydrographic profiles during its foraging trips, sending the data by satellite ARGOS whenever the seal goes back to the surface.While the principle intent of seal instrumentation was to improve understanding of seal foraging strategies (Biuw et al., 2007), it has also provided as a by-product a viable and cost-effective method of sampling hydrographic properties in many regions of the Southern Ocean (Charrassin et al., 2008; Roquet et al., 2013).

  • This visualization product displays the single use plastics (SUP) related plastic items abundance of marine macro-litter (> 2.5cm) per beach per year from Marine Strategy Framework Directive (MSFD) monitoring surveys. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale. Preliminary processings were necessary to harmonize all the data: - Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring; - Selection of MSFD surveys only (exclusion of other monitoring, cleaning and research operations); - Exclusion of beaches without coordinates; - Selection of SUP related items only. The list of selected items is attached to this metadata. This list was created using EU Marine Beach Litter Baselines, the European Threshold Value for Macro Litter on Coastlines and the Joint list of litter categories for marine macro-litter monitoring from JRC (these three documents are attached to this metadata). The selection was adapted to the Joint list of litter categories SUP identification and therefore contains some differences with the selection made for previously published versions of this product; - Normalization of survey lengths to 100m & 1 survey / year: in some case, the survey length was not exactly 100m, so in order to be able to compare the abundance of litter from different beaches a normalization is applied using this formula: Number of SUP items of the survey (normalized by 100 m) = Number of SUP related items of the survey x (100 / survey length) Then, this normalized number of¨SUP related items is summed to obtain the total normalized number of SUP related items for each survey. Finally, the median abundance of SUP related items for each beach and year is calculated from these normalized abundances of SUP related items per survey. Sometimes the survey length was null or equal to 0. Assuming that the MSFD protocol has been applied, the length has been set at 100m in these cases. Percentiles 50, 75, 95 & 99 have been calculated taking into account SUP related plastic items from MSFD data for all years. More information is available in the attached documents. Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the Marine Litter Database for this area.

  • Dataset summary Plankton and detritus are essential components of the Earth’s oceans influencing biogeochemical cycles and carbon sequestration. Climate change impacts their composition and marine ecosystems as a whole. To improve our understanding of these changes, standardized observation methods and integrated global datasets are needed to enhance the accuracy of ecological and climate models. Here, we present a global dataset for plankton and detritus obtained by two versions of the Underwater Vision Profiler 5 (UVP5). This release contains the images classified in 33 homogenized categories, as well as the metadata associated with them, reaching 3,114 profiles and ca. 8 million objects acquired between 2008-2018 at global scale. The geographical distribution of the dataset is unbalanced, with the Equatorial region (30° S - 30° N) being the most represented, followed by the high latitudes in the northern hemisphere and lastly the high latitudes in the Southern Hemisphere. Detritus is the most abundant category in terms of concentration (90%) and biovolume (95%), although its classification in different morphotypes is still not well established. Copepoda was the most abundant taxa within the plankton, with Trichodesmium colonies being the second most abundant. The two versions of UVP5 (SD and HD) have different imagers, resulting in a different effective size range to analyse plankton and detritus from the images (HD objects >600 µm, SD objects >1 mm) and morphological properties (grey levels, etc.) presenting similar patterns, although the ranges may differ. A large number of images of plankton and detritus will be collected in the future by the UVP5, and the public availability of this dataset will help it being utilized as a training set for machine learning and being improved by the scientific community. This will reduce uncertainty by classifying previously unclassified objects and expand the classification categories, ultimately enhancing biodiversity quantification. Data tables The data set is organised according to: - samples : Underwater Vision Profiler 5 profiles, taken at a given point in space and time. - objects : individual UVP images, taken at a given depth along the each profile, on which various morphological features were measured and that where then classified taxonomically in EcoTaxa. samples and objects have unique identifiers. The sample_id is used to link the different tables of the data set together. All files are Tab separated values, UTF8 encoded, gzip compressed. samples.tsv.gz - sample_id    <int>    unique sample identifier - sample_name    <text>    original sample identifier - project    <text>    EcoPart project title - lat, lon    <float>    location [decimal degrees] - datetime    <text>    date and time of start of profile [ISO 8601: YYYY-MM-DDTHH:MM:SSZ] - pixel_size    <float>    size of one pixel [mm] - uvp_model    <text>    version of the UVP: SD: standard definition, ZD: zoomed, HD: high definition samples_volume.tsv.gz Along a profile, the UVP takes many images, each of a fixed volume. The profiles are cut into 5 m depth bins in which the number of images taken is recorded and hence the imaged volume is known. This is necessary to compute concentrations. - sample_id    <int>    unique sample identifier - mid_depth_bin    <float>    middle of the depth bin (2.5 = from 0 to 5 m depth) [m] - water_volume_imaged    <float>    volume imaged = number of full images × unit volume [L] objects.tsv.gz - object_id    <int>     unique object identifier - object_name    <text>     original object identifier - sample_id    <int>     unique sample identifier - depth    <float>    depth at which the image was taken [m] - mid_depth_bin    <float>    corresponding depth bin [m]; to match with samples_volumes - taxon    <text>     original taxonomic name as in EcoTaxa; is not consistent across projects - lineage    <text>     taxonomic lineage corresponding to that name - classif_author    <text>     unique, anonymised identifier of the user who performed this classification - classif_datetime    <text>     date and time at which the classification was - group    <text>     broader taxonomic name, for which the identification is consistent over the whole dataset - group_lineage    <text>     taxonomic lineage corresponding to this broader group - area_mm2    <float>    measurements on the object, in real worl units (i.e. comparable across the whole dataset) … - major_mm    <float> - area    <float>    measurements on the objet, in [pixels] and therefore not directly comparable among the different UVP models and units - mean    <float> … - skeleton_area    <float> properties_per_bin.tsv.gz The information above allows to compute concentrations, biovolumes, and average grey level within a given depth bin. The code to do so is in `summarise_objects_properties.R`. - sample_id    <int>     unique sample identifier - depth_range    <text>     range of depth over which the concentration/biovolume are computed: (start,end], in [m] where `(` means not including, `]` means including - group    <text>     broad taxonomic group - concentration    <float>    concentration [ind/L] - biovolume    <float>    biovolume [mm3/L] - avg_grey    <float>    average grey level of particles [no unit; 0 is black, 255 is white] ODV_biovolumes.txt, ODV_concentrations.txt, ODV_grey_levels.txt This is the same information as above, formatted in a way that Ocean Data View https://odv.awi.de can read. In ODV, go to Import > ODV Spreadsheet and accept all default choices. Images The images are provided in a separate, much larger, zip file. They are stored with the format `sample_id/object_id.jpg`, where `sample_id` and `object_id` are the integer identifiers used in the data tables above.

  • The West Gironde Mud Patch (WGMP) is a mud deposit located 25 km from the mouth of the Gironde Estuary in the Bay of Biscay. This 4-metre-thick clay-silt feature, which extends over an area of 420 km2, is found at depths between 30 and 80 meters. The main objectives of the JERICObent7 cruise, in July 2019, were to characterise the evolution of the WGMP’s benthic ecosystem in terms of its sedimentary, biogeochemical and ecological properties and to reconstruct climate variations and identify potential anthropogenic impacts over the last few centuries. To this end, a precise chronological framework was established for the sedimentary archives of the last few decades using 210Pbxs (T1/2 = 22.3 years). Interface cores were collected at stations 1, 3 and 4 along a cross-shelf transect. Twin Kullenberg cores were collected at sites 3 and 4 for geochemical (KGL) and palaeoceanographic (JB7-ST) investigations. Each interface core was carefully extruded at 0.5 cm intervals from the top of the core to 4 cm, and then at 1 cm intervals until the bottom was reached. Kullenberg cores were only collected at sites 3 and 4. Depending on their intended use, the Kullenberg cores were sampled at different resolutions, the depth of each sediment layer corresponded to the depth from the top of the core. These layers were then used to determine the dry bulk density and radioisotope activities of interest (210Pb, 226Ra,  228Th, 137Cs, 40K). Excess 210Pb was used to establish the realignment and chronological framework of the interface and Kullenberg cores.

  • This visualization product displays the total abundance of marine macro-litter (> 2.5cm) per beach per year from non-MSFD monitoring surveys, research & cleaning operations. EMODnet Chemistry included the collection of marine litter in its 3rd phase. Since the beginning of 2018, data of beach litter have been gathered and processed in the EMODnet Chemistry Marine Litter Database (MLDB). The harmonization of all the data has been the most challenging task considering the heterogeneity of the data sources, sampling protocols and reference lists used on a European scale. Preliminary processings were necessary to harmonize all the data: - Exclusion of OSPAR 1000 protocol: in order to follow the approach of OSPAR that it is not including these data anymore in the monitoring; - Selection of surveys from non-MSFD monitoring, cleaning and research operations; - Exclusion of beaches without coordinates; - Some categories & some litter types like organic litter, small fragments (paraffin and wax; items > 2.5cm) and pollutants have been removed. The list of selected items is attached to this metadata. This list was created using EU Marine Beach Litter Baselines, the European Threshold Value for Macro Litter on Coastlines and the Joint list of litter categories for marine macro-litter monitoring from JRC (these three documents are attached to this metadata). - Exclusion of surveys without associated length; - Normalization of survey lengths to 100m & 1 survey / year: in some case, the survey length was not 100m, so in order to be able to compare the abundance of litter from different beaches a normalization is applied using this formula: Number of items (normalized by 100 m) = Number of litter per items x (100 / survey length) Then, this normalized number of items is summed to obtain the total normalized number of litter for each survey. Finally, the median abundance for each beach and year is calculated from these normalized abundances per survey. Percentiles 50, 75, 95 & 99 have been calculated taking into account other sources data for all years. More information is available in the attached documents. Warning: the absence of data on the map does not necessarily mean that they do not exist, but that no information has been entered in the Marine Litter Database for this area.

  • The network was initiated by IFREMER from 1993 to 2009 (under the acronym REMORA) to study the rearing performance of the Pacific oyster Crassostrea gigas at a national scale. To do so, the network monitored annually the mortality and growth of standardized batches of 18-month-old oysters. Starting in 1995, the monitoring of the rearing performance of 6-month-old oyster spat was integrated into this network. These sentinel batches were distributed simultaneously each year on 43 sites and were monitored quarterly. These sites were distributed over the main French oyster farming areas and allowed a national coverage of the multiannual evolution of oyster farming performances. Most of the sites were located on the foreshore at comparable levels of immersion. Field studies were carried out by the "Laboratoires Environnement Ressources" (LER) for the sites included in their geographical area of investigation. Following the increase in spat mortality in 2008, the network evolved in 2009 (under the acronym RESCO). From this date, the network selected 13 sites among the 43 sites previously monitored in order to increase the frequency of visits (twice a month) and the number of sentinel batches. More precisely, sentinel batches of oysters corresponding to different origins (wild or hatchery, diploid or triploid) and to two rearing age classes (spat or 18-month-old adults) were selected. The monitoring of environmental variables (temperature, salinity) associated with the 13 sites was also implemented. The actions of the network have thus contributed to disentangle the biotic and abiotic parameters involved in mortality phenomena, taking into account the different compartments (environment / host / infectious agents) likely to interact with the evolution of oyster rearing performance. Finally, since 2015, the network has merged the RESCO and VELYGER networks to adopt the acronym ECOSCOPA. The general objective of this current network is to analyze the causes of spatio-temporal variability of the main life traits (Larval stage - Recruitment - Reproduction - Growth - Survival - Cytogenetic abnormalities) of the cupped oyster in France and to follow their evolution on the long term in the context of climate change. To do this, the network proposes a regular spatio-temporal monitoring of the major proxies of the life cycle of the oyster, organized in three major thematic groups: (1) proxies related to growth, physiological tolerance and survival of experimental sentinel populations over 3 age classes: (2) proxies related to reproduction, larval phase and recruitment of the species throughout its natural range in France, and: (3) proxies related to environmental parameters essential to the species (weather conditions, temperature, salinity, pH, turbidity, chlorophyll a and phytoplankton) at daily or sub-hourly frequencies. Working in a geographical network associating several laboratories, ECOSCOPA provide these monitoring within 8 sites selected among the previous ones to ensure the continuity of the data acquisition. Today, these 8 sites are considered as ecosystems of common interest, contrasted, namely : - The Thau lagoon - The Arcachon basin - The Marennes Oléron basin - The Bourgneuf Bay - The bay of Vilaine - The bay of Brest - The bay of Mont Saint Michel - The bay of Veys The ECOSCOPA network is therefore one of the relevant monitoring tools on a national scale, allowing to objectively measure through different proxies the general state of health of cultivated and wild oyster populations, and this for the different sensitive phases of their life cycle. This network aims at allowing a better evaluation, on the long term, of the biological risks incurred by the sector but also by the ecosystems, in particular under the increasing constraint of climatic and anthropic changes. Figure : Sites monitored by the ECOSCOPA network  

  • '''Short description:''' Near-Real-Time multi-mission global satellite-based spectral integral parameters. Only valid data are used, based on the L3 corresponding products. Included wave parameters are partition significant wave height, partition peak period and partition peak or principal direction. Those parameters are propagated in space and time at a 3-hour timestep and on a regular space grid, providing information of the swell propagation characteristics, from source to land. The ouput products corresponds to one file per month gathering all the swell systems at a global scale. This product is processed by the WAVE-TAC multi-mission SAR and CFOSAT/SWIM data processing system to serve in near-real time the main operational oceanography and climate forecasting centers in Europe and worldwide. It processes data from the following missions: SAR (Sentinel-1A and Sentinel-1B) and CFOSAT/SWIM. All the spectral parameter measurements are optimally interpolated using swell observations belonging to the same swell field. The spectral data processing system produces wave integral parameters by partition (partition significant wave height, partition peak period and partition peak or principal direction) and the associated standard deviation and density of propagated observations. '''DOI (product) :''' https://doi.org/10.48670/moi-00175