In the context of contamination of shellfish species by domoic acid produced by microalgal species of the genus Pseudo-nitzschia, we studied the particular case of depuration kinetics of king scallops, Pecten maximus. The study was based on the REPHYTOX dataset (https://doi.org/10.17882/47251) which includes, among others, long-term time series of domoic acid in shellfish species. We selected only the locations along the English Channel and the Atlantic coastline. Contamination events were defined for each locations, depuration rates were estimated fitting an exponential decay model using a non-linear least squares regression. Spatio-temporal variability was assessed as well as correlations to environmental conditions, using REPHY dataset (https://doi.org/10.17882/47248). Finally, scenarios for predictions of either the dynamics of depuration or the domoic acid contamination at a precise date were performed. Four files are available as data used for the study and results : (i) subset of REPHYTOX dataset, (ii) subset of REPHY dataset, used in this study and (iii) contamination event information (i.e., initial and end date of the event, initial domoic acid concentration) and depuration rate estimations, and (iv) predictions of depuration dynamics with different scenarios. Information on each file is detailed in the end user manual and methodology and results are linked to an article in preparation.

EMODnet Chemistry aims to provide access to marine chemistry datasets and derived data products concerning eutrophication, acidity, contaminants and marine litter. The importance of the selected substances and other parameters relates to the Marine Strategy Framework Directive (MSFD). This aggregated dataset contains all unrestricted EMODnet Chemistry data profiles on eutrophication and acidity, and covers: the Artic Ocean, the North East Atlantic, the Greater North Sea and Celtic Seas, the Baltic Sea, the Mediterranean Sea and the Black Sea. ITS-90 water temperature and water body salinity variables have also been included ('as are') to complete the eutrophication and acidity data. If you use these variables for calculations, please refer to SeaDataNet for the quality flags: https://www.seadatanet.org/Products/Aggregated-datasets . This European dataset is the result of the aggregation of the regional datasets concerning eutrophication and acidity present in EMODnet Chemistry. The regional datasets are automatically harvested, and the resulting collections are aggregated and quality controlled using ODV Software and following a common methodology for all sea regions ( https://doi.org/10.13120/8xm0-5m67 ). Parameter names are based on P35 vocabulary, which relates to EMODnet Chemistry aggregated parameter names and is available at: https://vocab.nerc.ac.uk/search_nvs/P35/. This process were regionally performed by: 'Institute of Marine Research - Norwegian Marine Data Centre (NMD)' (Norway), 'IFREMER / IDM / SISMER - Scientific Information Systems for the SEA' (France), 'Aarhus University, Department of Bioscience, Marine Ecology Roskilde' (Denmark), 'Swedish Meteorological and Hydrological Institute (SMHI)' (Sweden), 'Hellenic Centre for Marine Research, Hellenic National Oceanographic Data Centre (HCMR/HNODC)' (Greece) and 'National Institute for Marine Research and Development 'Grigore Antipa' (Romania). When not present in original data, water body nitrate plus nitrite was calculated by summing all nitrate and nitrite parameters. The same procedure was applied for water body dissolved inorganic nitrogen (DIN), which was calculated by summing all nitrate, nitrite, and ammonium parameters. Concentrations per unit mass were converted to a unit volume using a constant density of 1.025 kg/L. The aggregated dataset can be downloaded as an ODV collection.

The flat oyster Ostrea edulis is a European native species that once covered vast areas in the North Sea, on the Atlantic coast and in other European coastal waters including the Mediterranean region. All these populations have been heavily fished by dredging over the last three centuries. More recently, the emergence of parasites combined with the proliferation of various predators and many human-induced additional stressors have caused a dramatic decrease in the last remaining flat oyster populations. Today, this species has disappeared from many locations in Europe and is registered on the OSPAR (Oslo-Paris Convention for the Protection of the Marine environment of the North-East Atlantic) list of threatened and/or declining species (see https://www.ospar.org/work-areas/bdc/species-habitats/list-of-threatened-declining-species-habitats). In that context, since 2018, the Flat Oyster REcoVERy project (FOREVER) has been promoting the reestablishment of native oysters in Brittany (France). This multi-partner project, involving the CRC (Comité Régional de la Conchyliculture), IFREMER (Institut Français de Recherche pour l’Exploitation de la Mer), ESITC (École Supérieure d’Ingénieurs des Travaux de la Construction) Caen and Cochet Environnement, has consisted of (1) inventorying and evaluating the status of the main wild flat oyster populations across Brittany, (2) making detailed analysis of the two largest oyster beds in the bays of Brest and Quiberon to improve understanding of flat oyster ecology and recruitment variability and to suggest possible ways of improving recruitment, and (3) proposing practical measures for the management of wild beds in partnership with members of the shellfish industry and marine managers. the final report of this project is available on Archimer : https://doi.org/10.13155/79506. This survey is part of the task 1 of the FOREVER, which took place between 2017-2021. Some previous data, acquired with the same methodology and within the same geographic area have been also added to this dataset. These data were collected during 30 intertidal and diving surveys in various bays and inlets of the coast of Bretagne. The localization of these surveys has been guided by the help of historical maps. In the field, the methodology was simple enough to be easily implemented regardless of the configuration of the sampled site. The intertidal survey was conducted at very low tide (tidal range > 100) to sample the 0-1m level. Sampling was carried out randomly or systematically following the low water line. Where possible (in terms of visibility and accessibility), dive surveys were also carried out (0-10m depth), along 100m transects, using the same methodology of counting in a 1m2 quadrat. As often as possible, geo-referenced photographs were taken to show the appearance, density and habitat where Ostrea edulis was present. All these pictures are available in the image bank file. Overall, this dataset contains a total of 300 georeferenced records, where flat oysters have been observed. The dataset file contains also information concerning the surrounding habitat description and is organized according the OSPAR recommendations. This publication gives also a map, under a kml format showing each occurrence and its characteristics. This work was done in the framework of the following research project: " Inventaire, diagnostic écologique et restauration des principaux bancs d’huitres plates en Bretagne : le projet FOREVER. Contrat FEAMP 17/2215675".

Rocch, the french "mussel watch", provides chemical data for marine quality management. Once a year, trace metals, organic compounds (chlorinated, PAH, brominated flame retardants, perfluorinated compounds, organotins ...) are analysed in molluscs tissues to check chemical quality according to European Framework Directives and to Regional Seas Convention (OSPAR).

REPHYTOX dataset includes long-term time series on phycotoxins in marine bivalve molluscs, since 1987, along the whole French coast. The dataset covers results on lipophilic toxins, PSP toxins, ASP toxins, and palytoxins. REPHYTOX was a full part of the REPHY network until 2015. The whole dataset is available.

The rasters correspond to the prediction uncertainties associted with the production of Mediterranean bioregions of megabenthic communities

'''DEFINITION''' Estimates of Ocean Heat Content (OHC) are obtained from integrated differences of the measured temperature and a climatology along a vertical profile in the ocean (von Schuckmann et al., 2018). The products used include three global reanalyses: GLORYS, C-GLORS, ORAS5 (GLOBAL_MULTIYEAR_PHY_ENS_001_031) and two in situ based reprocessed products: CORA5.2 (INSITU_GLO_PHY_TS_OA_MY_013_052) , ARMOR-3D (MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012). Additionally, the time series based on the method of von Schuckmann and Le Traon (2011) has been added. The regional OHC values are then averaged from 60°S-60°N aiming i) to obtain the mean OHC as expressed in Joules per meter square (J/m2) to monitor the large-scale variability and change. ii) to monitor the amount of energy in the form of heat stored in the ocean (i.e. the change of OHC in time), expressed in Watt per square meter (W/m2). Ocean heat content is one of the six Global Climate Indicators recommended by the World Meterological Organisation for Sustainable Development Goal 13 implementation (WMO, 2017). '''CONTEXT''' Knowing how much and where heat energy is stored and released in the ocean is essential for understanding the contemporary Earth system state, variability and change, as the ocean shapes our perspectives for the future (von Schuckmann et al., 2020). Variations in OHC can induce changes in ocean stratification, currents, sea ice and ice shelfs (IPCC, 2019; 2021); they set time scales and dominate Earth system adjustments to climate variability and change (Hansen et al., 2011); they are a key player in ocean-atmosphere interactions and sea level change (WCRP, 2018) and they can impact marine ecosystems and human livelihoods (IPCC, 2019). '''CMEMS KEY FINDINGS''' Since the year 2005, the upper (0-700m) near-global (60°S-60°N) ocean warms at a rate of 0.6 ± 0.1 W/m2. Note: The key findings will be updated annually in November, in line with OMI evolutions. '''DOI (product):''' https://doi.org/10.48670/moi-00234

This dataset contains all satellite altimeter wave heights above 9 m, from the following satellite missions: ERS-1, ERS-2, Topex-Poseidon (Topex only), Envisat, SARAL, Jason-1, Jason-2, Jason-3, Sentinel-3A, Sentinel-3B, Sentinel-6A, Cryosat-2, CFOSAT, SWOT. Storm event identification used the DetectHsStorm package developed by M. De Carlo and F. Ardhuin (  https://github.com/ardhuin/) . This data can be combined with modeled storm tracks (see F. Ardhuin, M. De Carlo, Storm tracks based on wave heights from LOPS WAVEWATCH III hindcast and ERA5 reanalysis, years 1991-2024, SEANOE (2025). doi: 10.17882/105148 )

These data are outputs of a spatio-temporal model inferring fish distribution. The maps are based on high-resolution catch data (VMS-logbook). They have a montly time resolution and a 0.05° spatial resolution. Four demersal species of the Bay of Biscay are available in the dataset: common sole (Solea solea), megrim (Lepidorhombus whiffiagonis), anglerfish (Lophius spp) and thornback ray (Raja clavata). Maps are provided for year 2008 to 2018 ; they were produced in the context of the MACCO project (https://www.macco.fr/en/accueil-english/), an Ifremer project that aims at proposing alternative management strategies for the mixed demersal fisheries of the Bay of Biscay.

The Southern Ocean plays a fundamental role in regulating the global climate. This ocean also contains a rich and highly productive ecosystem, potentially vulnerable to climate change. Very large national and international efforts are directed towards the modeling of physical oceanographic processes to predict the response of the Southern Ocean to global climate change and the role played by the large-scale ocean climate processes. However, these modeling efforts are greatly limited by the lack of in situ measurements, especially at high latitudes and during winter months. The standard data that are needed to study ocean circulation are vertical profiles of temperature and salinity, from which we can deduce the density of seawater. These are collected with CTD (Conductivity-Temperature-Depth) sensors that are usually deployed on research vessels or, more recently, on autonomous Argo profilers. The use of conventional research vessels to collect these data is very expensive, and does not guarantee access to areas where sea ice is found at the surface of the ocean during the winter months. A recent alternative is the use of autonomous Argo floats. However, this technology is not easy to use in glaciated areas. In this context, the collection of hydrographic profiles from CTDs mounted on marine mammals is very advantageous. The choice of species, gender or age can be done to selectively obtain data in particularly under-sampled areas such as under the sea ice or on continental shelves. Among marine mammals, elephant seals are particularly interesting. Indeed, they have the particularity to continuously dive to great depths (590 ± 200 m, with maxima around 2000 m) for long durations (average length of a dive 25 ± 15 min, maximum 80 min). A Conductivity-Temperature-Depth Satellite Relay Data Logger (CTD-SRDLs) has been developed in the early 2000s to sample temperature and salinity vertical profiles during marine mammal dives (Boehme et al. 2009, Fedak 2013). The CTD-SRDL is attached to the seal on land, then it records hydrographic profiles during its foraging trips, sending the data by satellite ARGOS whenever the seal goes back to the surface.While the principle intent of seal instrumentation was to improve understanding of seal foraging strategies (Biuw et al., 2007), it has also provided as a by-product a viable and cost-effective method of sampling hydrographic properties in many regions of the Southern Ocean (Charrassin et al., 2008; Roquet et al., 2013).