This folder contains two examples of PAGURE datasets, corresponding to three surveys: -CGFS conducted in 2018 in the English Channel (Northeast Atlantic) -EPIBENGOL conducted in 2019 in the Gulf of Lion (Western Mediterranean) -EVHOE conducted in 2020 in the Bay of Biscay and Celtic Shelf (Northeast Atlantic) Files include metadata for the sampling stations, annotation files. A readme tex file contains the links to the voyage metadata This folder is aimed at providing an example of documented underwater imagery dataset. These data are part of the data exchange conducted in the QuatreA collaboration between the French Research Institute for the Exploitation of the Sea (Ifremer), the Commonwealth Scientific and Industrial Research Organisation (CSIRO), and the University of Tasmania (UTAS).

Understanding the spatial and temporal preferences of toxic phytoplankton species is of paramount importance in managing and predicting harmful events in aquatic ecosystems. In this study we address the realised niche of the species Alexandrium minutum, Pseudo-nitzschia fraudulenta and P. australis. We used them to highlight distribution patterns at different scales and determine possible drivers. To achieve this, we have developed original procedures coupling niche theory and habitat suitability modelling using abundance data in four consecutive steps: 1) Estimate the realised niche applying kernel functions. 2) Assess differences between the species’ niche as a whole and at the local level. 3) Develop habitat and temporal suitability models using niche overlap procedures. 4) Explore species temporal and spatial distributions to highlight possible drivers. Data used are species abundance and environmental variables collected over 27 years (1988-2014) and include 139 coastal water sampling sites along the French Atlantic coast. Results show that A. minutum and P. australis niches are very different, although both species have preference for warmer months. They both respond to decadal summer NAO but in the opposite way. P. fraudulenta realised niche lies in between the two other species niches. It also prefers warmer months but does not respond to decadal summer NAO. The Brittany peninsula is now classified as an area of prevalence for the three species. The methodology used here will allow to anticipate species distribution in the event of future environmental challenges resulting from climate change scenarios.

These data are outputs of a spatio-temporal model inferring fish distribution. The maps are based on high-resolution catch data (VMS-logbook). They have a montly time resolution and a 0.05° spatial resolution. Four demersal species of the Bay of Biscay are available in the dataset: common sole (Solea solea), megrim (Lepidorhombus whiffiagonis), anglerfish (Lophius spp) and thornback ray (Raja clavata). Maps are provided for year 2008 to 2018 ; they were produced in the context of the MACCO project (https://www.macco.fr/en/accueil-english/), an Ifremer project that aims at proposing alternative management strategies for the mixed demersal fisheries of the Bay of Biscay.

Gironde estuary environmental parameters and SPM maps generated from 41 Landsat-8/OLI and Sentinel-2/MSI images acquired over the period 2013-2018. Except bathymetry and daily river discharge data, that are accessible on public platforms, the dataset includes all of the time seris used in the publication: Analysis of suspended sediment variability in a large highly-turbid estuary using a 5-year-long remotely-sensed data archive at high resolution, Journal of Geophysical Research: Oceans, DOI:10.1029/2019JC015417.

Long-term time series of coliform bacteria concentration (fecal coliform or Escherichia coli) in shellfish in four submarine areas (North Sea/Channel, Britany, Atlantic, Mediterranean).

For the 21 years of the study, an examination of trends in chlorophyll concentration revealed a general decline throughout the Gulf over the production period. These trends, extracted from dynamic linear model, also allowed this decline to be quantified. Expressed as a percentage, a large part of the area below the 50 m bathymetric line showed a decrease of at least 10% over the period, corresponding to a value of at least 0.1 µg.l-1. However, the spatial distribution reveals some more local phenomena. In southern Brittany, from Quimper to Vannes, a particular feature appears, with an upward trend over several kilometres along the coast, followed by a pronounced gradient along the coast. This gradient includes a zone where a continuous monotonic increasing trend is observed, then a zone where the trend becomes not significant and finally, about 15 km from the coast, a new zone where a significant continuous monotonic decreasing trend is observed. The increase in chlorophyll a concentration in the very coastal part is greater than 0.1 µg.l-1 over the period. Another peculiarity concerns the central part, located at the edge of the plateau at Cap Ferrat and Pente Aquitaine, where an increase in chlorophyll a was observed, but the variations remained small, being less than 0.1 µg.l-1. About a hundred kilometres south-west of Saint Nazaire, an area of about 40 by 50 km shows a decrease in chlorophyll a of more than 20%, quantified as more than 0.1 µg.l-1 over the period.

SUCHIMED 2021 is the 10th campaign for monitoring chemical contamination and its evolution in the Mediterranean Sea. It has been designed as a platform supporting various surveillance and research activities, with the main pillar being the RINBIO network, which involves active biosurveillance through mussel caging. Regarding chemical contamination, the main results of this campaign are as follows: In Occitania region: - Chronic presence of DDT for 20 years. - Detection of terrigenous markers (Mn, As) between the mouths of the Aude and Hérault rivers, along with contamination of sediments near Port-La-Nouvelle by HAP and TCE (Pt). In PACA region: - PCB markers detected between the Rhône River and Marseille (in all matrices), originating from multiple sources with no significant changes over the past 20 years. - HAP contamination in sediments of the industrial-port zone in Fos. - Presence of TBT at the Carry-le-Rouet station above ecologically acceptable concentrations (EAC), to be confirmed in the next campaign. - Detection of metallic elements and HAP in sediments near the Marseille urban area, partly in plankton, along with TCE near the Cortiou wastewater treatment plant outfall. - Chronic marking of PCB, HAP, metals (Hg, Pb, Cu, TCE), PBDE, and/or organotin compounds (TBT) in Toulon Bay, showing no significant temporal trend over two decades for the first five compounds. - Detection of Cr, Mn, and Ni in the water column and HAP in sediments near the Var River mouth, with differences in contamination between matrices raising questions about organic matter origin. - Metal (including Pb) and HAP marking in the water column and sediment in Villefranche Bay. Around Corsica: - Strong influence of the island's geological background (i.e., high Cr and Ni content) on obtained concentrations. - Chronic marking of Cu in the water column in the ports of Porto-Vecchio and Bonifacio, stable over time, with HAP, metals (Hg, Pb, Zn), and to a lesser extent, PCB detection in Bonifacio sediment. - Marking of HAP and TCE in the sediment of the Bastia coastline. - Detection of Pb and TCE at the Golo River mouth. - Contamination of the Canari site with metals (Cr and Ni in the water column, Cu in sediment), and notably, confirmed ecotoxicity likely linked to these elements. The 2021 campaign highlighted the feasibility of researching effects on caged mussels using biomarkers. Lysosomal markers, less sensitive to trophic differences, proved to best reflect the general stress state of organisms related to their contamination. The study of trophic transfers appears to confirm the decrease in most metallic elements (Cr, Cu, Fe, Mn, Ni, Pb) and HAP, bioamplification of Hg and PCB, and specific bioaccumulation of certain elements by organisms (e.g., As or Zn by mussels, HAP by plankton). Finally, the campaign revealed the presence of micro and mesoplastics at almost all sampled sites. The measured microplastic values align with concentrations observed in the western Mediterranean, with a trend towards reduction based on available 10-year data.

As part of the marine water quality monitoring of the “Pertuis” and the “baie de l’Aiguillon” (France), commissioned by the OFB and carried out by setec énergie environnement, three monitoring stations were installed. Two of them were set up at the mouths of the Charente and Seudre rivers on February 6 and 27, 2019, respectively, while a third was deployed in the Bay of Aiguillon on March 24, 2021. The dataset presented here concerns the station installed in the Charente estuary. Measurements are organized into .csv files, with one file per year. Data is collected using a SAMBAT multiparameter probe, which records the following parameters: - Temperature (-5 to 35 °C) - Conductivity (0 to 10 mS/cm) - Pressure (0 to 10 m) - Turbidity (0 to 300 NTU) - Dissolved Oxygen (0 to 20 mg/L & 0 to 200 %) - Fluorescence (0 to 50 µg/l) - PH (0/14)

The West Gironde Mud Patch (WGMP) is a mud deposit located 25 km from the mouth of the Gironde Estuary in the Bay of Biscay. This 4-metre-thick clay-silt feature, which extends over an area of 420 km2, is found at depths between 30 and 80 meters. The main objectives of the JERICObent7 cruise, in July 2019, were to characterise the evolution of the WGMP’s benthic ecosystem in terms of its sedimentary, biogeochemical and ecological properties and to reconstruct climate variations and identify potential anthropogenic impacts over the last few centuries. To this end, a precise chronological framework was established for the sedimentary archives of the last few decades using 210Pbxs (T1/2 = 22.3 years). Interface cores were collected at stations 1, 3 and 4 along a cross-shelf transect. Twin Kullenberg cores were collected at sites 3 and 4 for geochemical (KGL) and palaeoceanographic (JB7-ST) investigations. Each interface core was carefully extruded at 0.5 cm intervals from the top of the core to 4 cm, and then at 1 cm intervals until the bottom was reached. Kullenberg cores were only collected at sites 3 and 4. Depending on their intended use, the Kullenberg cores were sampled at different resolutions, the depth of each sediment layer corresponded to the depth from the top of the core. These layers were then used to determine the dry bulk density and radioisotope activities of interest (210Pb, 226Ra,  228Th, 137Cs, 40K). Excess 210Pb was used to establish the realignment and chronological framework of the interface and Kullenberg cores.