This dataset contains the dynamical outputs of a global ocean simulation coupling dynamics and biogeochemistry at ¼° over the year 2019. The simulation has been performed using the coupled circulation/ecosystem model NEMO/PISCES (https://www.nemo-ocean.eu/), which is here enhanced to perform an ensemble simulation with explicit simulation of modeling uncertainties in the physics and in the biogeochemistry. This dataset is one of the 40 members of the ensemble simulation. This study was part of the Horizon Europe project SEAMLESS (https://seamlessproject.org/Home.html), with the general objective of improving the analysis and forecast of ecosystem indicators.   See Popov et al. (https://os.copernicus.org/articles/20/155/2024/) for more details on the study.

Mesoscale eddy detection from 2000 to 2021 are computed using the AMEDA algorithm applied on AVISO L4 absolute dynamic topography at 1/8th degree. Eddy numbers correspond to tracks referenced in the DYNED atlas (https://doi.org/10.14768/2019130201.2). Detection is based on AVISO delyed-time product from 2000 to 2019 and on day+6 near-real-time altimetry from 2020 to 2021. Colocalisation is then made with available in situ profiles from Coriolis Ocean Dataset for Reanalysis (CORA) delayed-time data (113486 profiles) and Copernicus near-real-time profiles (43567).

This dataset contains (1) outputs of Species Distribution Models (SDMs) for marine fish and (2) estimation of species richness using those outputs. SDMs use correlative algorithms to link presences of species to the environment recorded in place and time of their observation, calculate their environmental niche, estimate the geographical location suitable for them (habitat suitability) and in fine their geographical distribution. Here, we downloaded presences of marine fish from two open source databases, GBIF and OBIS and 13 environmental predictors known to be relevant in fish ecology (list below). We used the CEPHALOPOD pipeline, a framework allowing the user the compute a lot of species at the same time, with comparable methods and a verification of quality of inputs and outputs at every steps (Schickele et al., 2025). 3,642 fish made it to the final step and have the habitat suitability estimated for 12 month + annual mean, 10 bootstrap to quantify uncertainty and x algorithms. Those estimation are available in the “L2_marine_fish_*.nc” files, organized by water column position (bathydemersal, bathypelagic, benthopelagic, demersal, pelagic-neritic, pelagic-oceanic, reef-associated). We then used their annual mean to estimate their actual geographic distribution by applying (1) a bathymetric filtration and (2) a cutting procedure which removes isolated patches of high suitability (i.e., potential distribution) with no recorded presences (i.e., considered to be outside of the species dispersion range). Those geographic distribution were then stacked to estimate global species richness of every fish and each water column position.

The Coriolis Ocean Dataset for Reanalysis for the Ireland-Biscay-Iberia region (hereafter CORA-IBI) product is a regional dataset of in situ temperature and salinity measurements. The latest version of the product covers the period 1950-2014. The CORA-IBI observations comes from many different sources collected by Coriolis data centre in collaboration with the In Situ Thematic Centre of the Copernicus Marine Service (CMEMS INSTAC).  The observations integrated in the CORA-IBI product have been acquired both by autonomous platforms (Argo profilers, fixed moorings, gliders, drifters, sea mammals, fishery observing system from the RECOPESCA program), research or opportunity vessels ( CTDs, XBTs, ferrybox).  This CORA-IBI product has been controlled using an objective analysis (statistical tests) method and a visual quality control (QC). This QC procedure has been developed with the main objective to improve the quality of the dataset to the level required by the climate application and the physical ocean re-analysis activities. It provides T and S individual profiles on their original level with QC flags. The reference level of measurements is immersion (in meters) or pressure (in decibars). It is a subset on the IBI (Iberia-Bay-of-Biscay Ireland) of the CMEMS product referenced hereafter. The main new features of this regional product compared with previous global CORA products are the incorporation of coastal profiles from fishery observing system (RECOPESCA programme) in the Bay of Biscay and the English Channel as well as the use of an historical dataset collected by the Service hydrographique de la Marine (SHOM).

This dataset is an aggregation of all availale in situ data from Coriolis and Copernicus in situ data centres, observed in the French DCSMM area. It contains 5167 NetCDF CF files from 1903 to 2017. Each file contains the observations of a specific platform (e.g. vessel, mooring site, sea level station). Observed parameters are temperature, salinity, pressure, oxygen, nitrate, chlorophyll (and other bio-geo-chemicals), current, wave, sea level, river flow.  

These monthly gridded climatology were produced using MBT, XBT, Profiling floats, Gliders, and ship-based CTD data from different database and carried out in the Med. between 1969 and 2013. The Mixed Layer Depth (MLD) is calculated with a delta T= 0.1 C criterion relative to 10m reference level on individual profiles. The Depth of the Bottom of the Seasonal Thermocline (DBST) is calculated on individual profiles as the maximum value from a vector composed of two elements: 1) the depth of the temperature minimum in the upper 200m; 2) the MLD. This double criterion for the calculation of DBST is necessary in areas where the mixed layer exceed 200m depth. DBST is the integration depth used in the calculation of the upper-ocean Heat Storage Rate. For more details about the data and the methods used, see: Houpert et al. 2015, Seasonal cycle of the mixed layer, the seasonal thermocline and the upper-ocean heat storage rate in the Mediterranean Sea derived from observations, Progress in Oceanography, http://doi.org/10.1016/j.pocean.2014.11.004

This dataset is composed by the climatological seasonal field of the Ocean Salinity Stratification as defined from the Brunt-Vaisala frequency limited to the upper 300 m depth. The details are given in Maes, C., and T. J. O’Kane (2014), Seasonal variations of the upper ocean salinity stratification in the Tropics, J. Geophys. Res. Oceans, 119, 1706–1722, doi:10.1002/2013JC009366.

Observations of Sea surface temperature and salinity are now obtained from voluntary sailing ships using medium or small size sensors. They complement the networks installed on research vessels or commercial ships. The delayed mode dataset proposed here is upgraded annually as a contribution to GOSUD (http://www.gosud.org )

The glider operations in the MOOSE network started to be deployed regularly in 2010 in the North Western Mediterranean Sea, thanks to the setup of national glider facilities at DT-INSU/Ifremer (http://www.dt.insu.cnrs.fr/gliders/gliders.php) and with the support of the European project FP7-PERSEUS. Two endurance lines are operated: MooseT00 (Nice-Calvi; Ligurian Sea) and MooseT02 (Marseille-Menorca; Gulf of Lion). The all dataset here corresponds to raw data in the EGO format.

A quantitative understanding of the integrated ocean heat content depends on our ability to determine how heat is distributed in the ocean and what are the associated coherent patterns. This dataset contains the results of the Maze et al., 2017 (Prog. Oce.) study demonstrating how this can be achieved using unsupervised classification of Argo temperature profiles. The dataset contains: - A netcdf file with classification~results (labels and probabilities) and coordinates (lat/lon/time) of 100,684 Argo temperature profiles in North Atlantic. - A netcdf file with a Profile Classification Model (PCM) that can be used to classify new temperature profiles from observations or numerical models. The classification method used is a Gaussian Mixture Model that decomposes the Probability Density Function of the dataset into a weighted sum of Gaussian modes. North Atlantic Argo temperature profiles between 0 and 1400m depth were interpolated onto a regular 5m grid, then compressed using Principal Component Analysis and finally classified using a Gaussian Mixture Model. To use the netcdf PCM file to classify new data, you can checkout our PCM Matlab and Python toolbox here: https://github.com/obidam/pcm