Survival was recorded at the endpoint for all batches of each group (2n-control, 2n-wild, 2n-commercial, 2nR, 3nR and 3n-commercial). Similarly, initial and final yield were recorded, corresponding to the total weight of the live oysters at deployment and at the endpoint. Finally, shell length and total weight for individually recorded at reception and at the endpoint.

As part of the European Horizon Europe FOCCUS project (https://foccus-project.eu/), the metadata inventory of European coastal platforms has been extracted. The inventory was based on the following History and Latest products, downloaded from the CMEMS website (https://marine.copernicus.eu/fr/acces-donnees) at: 1) Global Ocean-In-Situ Near-Real-Time Observation, 2) Atlantic Iberian Biscay Irish Ocean-In-Situ Near Real Time Observations, 3) Mediterranean Sea-In-Situ Near Real Time Observations, 4) Atlantic-European North West Shelf-Ocean In-Situ Near Real Time Observations. To carry out this inventory, it was decided to target only coastal platforms, located less than 200km from the coast and at a depth of less than 400m. For mobile platforms, it was also decided to focus only on the first position in the file. This data must be located within 200 km of the coast and at a depth of less than 400 m. In this inventory, FerryBox platforms have all been considered as coastal platforms. The following platforms were extracted from the products: BO (Bottles), CT (CTD), DB (Drifting Buoys), FB (Ferry Box), GL (Gliders), HF (High Frequency Radar), MO (Mooring), PF (Profiling Float), TG (Tide Gauge) and XB (XBT). Once the metadata had been extracted from the files, duplicates were removed (files with the same names). Duplicate platforms of type _TS_ and _WS_ were merged (date and parameters). Latest‘ files have been merged with ’History" files. Missing metadata have been replaced in the Excel file by ‘Missing Data’. Some old dates were also revised by hand because they had been badly extracted, as well as some institution names that included special characters. Platforms located on estuaries/rivers/lakes/ponds have also been removed by hand. This inventory identified a total of 10,479 coastal platforms.

Key physico-chemical parameters (salinity, temperature, turbidity and dissolved oxygen) were measured in surface water during longitudinal transects in the Loire and Gironde estuaries in summers 2017 and 2018. This objective of this work was to determine the distribution of the dissolved oxygen and to detect potential severe desoxygenation. The transects were scheduled in order to begin the measurements at high tide from a site located upstream of an area where severe deoxygenation have been already been reported. Then, the transect was realised by sailing at low speed downstream with a multiparameter probe SAMBAT, maintained at 0.5 m below the surface, that collected a measurement every 2 minutes.

Since 2004, the Service facility SNAPO-CO2 (Service National d’Analyse des Paramètres Océaniques du CO2) housed by the LOCEAN laboratory (Paris, France) has been in charge for the analysis of Total Alkalinity (AT) and Total dissolved inorganic carbon (CT) of seawater samples on a series of cruises or ships of opportunity conducted in different regions in the frame of French projects. More than 44000 observations are synthetized in this work. Sampling was performed either from CTD-Rosette casts (Niskin bottles) or collected from the ship’s seawater supply (intake at about 5m depth). After completion of each cruise, discrete samples were returned back at LOCEAN laboratory and stored in a dark room at 4 °C before analysis generally within 2-3 months after sampling (sometimes within a week).  AT and CT were analyzed simultaneously by potentiometric titration using a closed cell (Edmond, 1970). Certified Reference Materials (CRMs) provided by Pr. A. Dickson (Scripps Institution of Oceanography, San Diego, USA) were used to calibrate the measurements. The same instrumentation was used for underway measurements during OISO cruises (https://doi.org/10.18142/228) and OISO AT-CT data for 1998-2018 in the South Indian Ocean added in this synthesis. The synthesis is organized in two files (one for Global ocean and the Coastal Zones, one for the Mediterranean Sea) with the same format: Cruise name, Ship name, day, month, year, hour, minute, second, latitude, longitude, depth, AT (µmol/kg), Flag-AT, CT (µmol/kg), Flag-CT, Temperature (°C), Flag-Temp, Salinity (PSU), Flag-Salinity, nsample/cruise, nsample on file, sampling method.

Sardine physiological measurments from september to november 2020

The data file present detailed individual congener/compound concentrations  for a large variety of hydrophobic organic contaminants including polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs), legacy and alternative brominated flame retardants (BFRs) and per- and polyfluoroalkyl substances (PFASs) in meso- and bathypelagic organisms collected in the Bay of Biscay, northeast Atlantic, in October 2017. The studied species include 3 crustacean species (Pasiphaea sivado, Sergia robusta, Ephyrina figueirai) and 11 fish species (Xenodermichthys copei, Searsia koefoedi, Myctophum punctatum, Notoscopelus kroeyeri, Lampanyctus crocodilus, Argyropelecus olfersii, Arctozenus risso, Stomias boa, Serrivomer beanii, Chauliodus sloani, Aphanopus carbo). The organisms were collected at night during one single trawling using a 25 m vertical opening pelagic trawl in the deep scattering layer (ca 800 m depth in the water column; 1330 m bottom floor). This dataset was used in the article entitled "A large diversity of organohalogen contaminants reach the meso- and bathypelagic organisms in the Bay of Biscay (northeast Atlantic)" published in Marine Pollution Bulletin.

This dataset gathers data used to infer the trophic structure and functioning of fish assemblages in the Eastern English Channel, the Bay of Biscay and the Gulf of Lions : - Biomass data, resulting from accoustic monitoring for pelagic species, or bottom trawling for demersal species, after extrapolation based on stratification scheme - Individual C and N isotopic ratios, length and mass, for all individuals considered - Individual energetic density values

The West Gironde Mud Patch (WGMP) is a 420-km2 mud belt in the Bay of Biscay, located 25 km off the mouth of the Gironde estuary. This clay-silt feature of 4 m in thickness extends between 30 and 75m water depth, surrounded by the sands and gravels that cover the North Aquitaine continental shelf. Interface cores were collected during JERICOBent-1 cruise (October 2016; Deflandre (2016) doi.org/10.17600/16010400) along two cross-shelf transects for a total of 9 sites. Each sediment core was carefully extruded every 0.5 cm from the top core to 4 cm and every 1 cm below until the core bottom. The sediment layers were used to determine dry bulk density, grain size and selected radioisotope activities (210Pb, 226Ra, 137Cs, 228Th, K).

Good Environmental Status assessment (GES) for descriptor 8 (contaminants, D8) of the Marine Strategy Framework Directive (MSFD) is reached when concentrations of contaminants are at levels not giving rise to pollution effects. It is described by 4 criteria among which the first one focus on the concentration of the contaminants in the environment (criteria 1 of the D8, D8C1). The environmental status for D8 in France includes assessment of contaminant concentrations in sediment, bivalves, fish, birds, mammals to cover the French marine area the continental shelf from the coast line). The 8 tables below present the assessment of the chemical contamination in sediment and bivalves on the coastal area of the 4 French marine subregions for D8 as part of the 2024 GES assessment. These tables report the status and temporal trends of each station x matrice x substance triplet in each of the 4 French marine subregions. Explanation on how to read the cells is given in the “read file”. The environmental assessment for D8 in France can be found in Mauffret al., 2023 (DOI:10.13155/97214). It includes 17 national indicator assessments, 4 OSPAR indicators and integrated assessment in selected assessment units at the level of the criteria 1 and 2. 

Questions: Invasiveness depends in part on the ability of exotic species to either exclude native dominants or to fill an empty niche. Comparisons of niches and effects of closely related native and invasive species enable the investigation of this topic. Does Spartina anglica invade European salt marshes through competitive exclusion of the native Spartina maritima or due to the occurrence of an empty ecological niche in highly anoxic conditions? Location: The Arcachon Bay (France). Methods: At three intertidal levels, we quantified competitive response and effect abilities of the two species through a cross-transplantation removal experiment. We also compared at three intertidal levels the biomass, root/shoot ratio, productivity and environmental conditions (elevation, salinity, potential redox and soil moisture) of salt marsh communities dominated by the exotic Spartina anglica or the native Spartina maritima. Results: Both established species showed similar biotic resistance to the invasion of the other species, but the exotic showed important intraspecific facilitation for growth. Species had similar niches and total biomass along a gradient of anoxic conditions, but the exotic had a much higher root/shoot ratio and productivity than the native. Owing to its rhizome density, the exotic showed a high ability to increase sediment oxygenation, likely to explain its important intraspecific facilitation. Conclusions: Our results showed that the invasion success of S. anglica cannot be explained by the competitive exclusion of the native or by its ability to fill an empty niche along a gradient of anoxia. Its behaviour as a self-facilitator invasive engineer is very likely to explain its rapid spread in the Bay and biotic resistance to the colonization of other congeneric species when established in dense patches. Additionally, we suggest that physical disturbance in the marsh communities dominated by the native S. maritima may disrupt its biotic resistance against the invasion of S. anglica.