WGS of SARS-CoV-2 by Oxford Nanopore Technology from raw wastewater samples collected in France, 2020-2021

DNA sequencing of Crassostrea gigas Pacific oyster spat experimentally infected with OsHV-1 virus from oyster basin of Marennes-Oleron

Metabarcoding data were produced based on samples gathered at Ifremer where the DNA was extracted; PCR libraries were built at Ifremer and Genseq; libraries were sequenced at Novogene. The data to download contain: 1/d emultiplexed raw data, 2/ metadata, and 3) Scripts to process data and taxonomically assign DNA sequences 4) Rmarkdown to analyze communities.

Individuals from 5 populations were kept in common garden conditions in order to examine acclimation and adaptation to temperature in the honeycomb worm. Worms were exposed to 5 temperature treatments, and collected for RNAseq analysis. Gene expression patterns were then examined.

Whole genome pooled sequencing of individuals from 4 populations and 3 different color phenotype in order to uncover the genetic variants linked to color expression in the pearl oyster P. margaritifera.

Analysis of tuna stomach contents

Successive infections with Vibrio harveyi were conducted in two populations of the European abalone in order to examine which genes may be involved in improved survival to the disease in the St. Malo population.

This dataset consists of metatranscriptomic sequencing reads corresponding to coastal micro-eukaryote communities sampled in Western Europe in 2018 and 2019.

Vibrio bacteria sampled from juvenile oysters and seawater collected in Thau Lagoon (Languedoc-Roussillon, France) in October 2015 during a mortality event were genotyped using hsp60, rctB, topA and mreB protein-coding genes

Metagenomic analysis of clams from Sanaga river in Cameroon to describe the virome