Chlorophyll pigment concentrations in water bodies
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SYKE Alg@line project in the Baltic Sea monitors the state of the sea and detects algal blooms. Several millions of data points are collected annually from the Baltic Sea, using a fleet of 5-7 ferries. Two best equipped ferries offered in TNA are m/s Silja Serenade, which travels daily between Helsinki and Stockholm (Sweden) and m/s Finnmaid, which travels approx. twice a week from Helsinki to Travemünde (Germany) and back. Both ferries are equipped with flow-through system with thermosalinograph, chlorohyll, phycocyanin and CDOM fluorometers, turbiditymeter and refrigerated.sampling unit providing discrete water samples for laboratory analyses (e.g. microscopy, flowCAM, nutrients, optical analysis, experimental work). Additional sensors e.g. for primary production (FRRF) and light reflectance are used periodically, new sensors for light absorption and pCO2 will be soon implemented. Data can be retrieved in real time using satellite or GSM connection (basic sensors) or downloaded during harbour visits (additional sensors). Alg@line data is available e.g. through MyOcean and has also been delivered to users based on mutual cooperation, including scientific advice. Algaline ships maintained by SYKE host measurement systems from other countries, and periodically they are used as platforms for international short-term studies.
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SYKE Alg@line project in the Baltic Sea monitors the state of the sea and detects algal blooms. Several millions of data points are collected annually from the Baltic Sea, using a fleet of 5-7 ferries. Two best equipped ferries offered in TNA are m/s Silja Serenade, which travels daily between Helsinki and Stockholm (Sweden) and m/s Finnmaid, which travels approx. twice a week from Helsinki to Travemünde (Germany) and back. Both ferries are equipped with flow-through system with thermosalinograph, chlorohyll, phycocyanin and CDOM fluorometers, turbiditymeter and refrigerated sampling unit providing discrete water samples for laboratory analyses (e.g. microscopy, flowCAM, nutrients, optical analysis, experimental work). Additional sensors e.g. for primary production (FRRF) and light reflectance are used periodically, new sensors for light absorption and pCO2 will be soon implemented. Data can be retrieved in real time using satellite or GSM connection (basic sensors) or downloaded during harbour visits (additional sensors). Alg@line data is available e.g. through MyOcean and has also been delivered to users based on mutual cooperation, including scientific advice. Algaline ships maintained by SYKE host measurement systems from other countries, and periodically they are used as platforms for international short-term studies.
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Moving 6-year analysis and visualization of Water body chlorophyll-a in the North Sea. Four seasons (December-February, March-May, June-August, September-November). Data Sources: observational data from SeaDataNet/EMODnet Chemistry Data Network. Description of DIVA analysis: Geostatistical data analysis by DIVAnd (Data-Interpolating Variational Analysis) tool, version 2.7.9. results were subjected to the minfield option in DIVAnd to avoid negative/underestimated values in the interpolated results; error threshold masks L1 (0.3) and L2 (0.5) are included as well as the unmasked field. The depth dimension allows visualizing the gridded field at various depths.
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Moving 6-year analysis of Water body chlorophyll-a in the Mediterranean Sea for each season: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Every year of the time dimension corresponds to the 6-year centered average of the season. 6-years periods span from 1990-1995 until 2016-2021. Data Sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Units: mg/m3. Description of DIVA analysis: The computation was done with the DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.9, using GEBCO 30sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps grids is dx=dy=0.125 degrees (around 13.5km and 10.9km accordingly). The vertical resolution is 20 depth levels: [0.,5.,10.,20.,30.,50.,75.,100.,125.,150.,200.,250.,300.,400.,500.,600.,700.,800.,900.,1000.]. The horizontal correlation length is 200km. The vertical correlation length (in meters) was set twices the vertical resolution: [10.,10.,20.,20.,40.,50.,50.,50.,50.,100.,100.,100.,200.,200.,200.,200.,200.,200.,200.,200.]. Duplicates check was performed using the following criteria for space and time: dlon=0.001deg., dlat=0.001deg., ddepth=1m, dtime=1hour, dvalue=0.1. The error variance (epsilon2) was set equal to 1 for profiles and 10 for time series to reduce the influence of close data near the coasts. An anamorphosis transformation was applied to the data (function DIVAnd.Anam.loglin) to avoid unrealistic negative values: threshold value=200. A background analysis field was used for all years (1990-2021) with correlation length equal to 600km and error variance (epsilon2) equal to 20. Quality control of the observations was applied using the interpolated field (QCMETHOD=3). Residuals (differences between the observations and the analysis (interpolated linearly to the location of the observations) were calculated. Observations with residuals outside the minimum and maximum values of the 99% quantile were discarded from the analysis. Originators of Italian data sets-List of contributors: - Brunetti Fabio (OGS) - Cardin Vanessa, Bensi Manuel doi:10.6092/36728450-4296-4e6a-967d-d5b6da55f306 - Cardin Vanessa, Bensi Manuel, Ursella Laura, Siena Giuseppe doi:10.6092/f8e6d18e-f877-4aa5-a983-a03b06ccb987 - Cataletto Bruno (OGS) - Cinzia Comici Cinzia (OGS) - Civitarese Giuseppe (OGS) - DeVittor Cinzia (OGS) - Giani Michele (OGS) - Kovacevic Vedrana (OGS) - Mosetti Renzo (OGS) - Solidoro C.,Beran A.,Cataletto B.,Celussi M.,Cibic T.,Comici C.,Del Negro P.,De Vittor C.,Minocci M.,Monti M.,Fabbro C.,Falconi C.,Franzo A.,Libralato S.,Lipizer M.,Negussanti J.S.,Russel H.,Valli G., doi:10.6092/e5518899-b914-43b0-8139-023718aa63f5 - Celio Massimo (ARPA FVG) - Malaguti Antonella (ENEA) - Fonda Umani Serena (UNITS) - Bignami Francesco (ISAC/CNR) - Boldrini Alfredo (ISMAR/CNR) - Marini Mauro (ISMAR/CNR) - Miserocchi Stefano (ISMAR/CNR) - Zaccone Renata (IAMC/CNR) - Lavezza, R., Dubroca, L. F. C., Ludicone, D., Kress, N., Herut, B., Civitarese, G., Cruzado, A., Lefèvre, D.,Souvermezoglou, E., Yilmaz, A., Tugrul, S., and Ribera d'Alcala, M.: Compilation of quality controlled nutrient profiles from the Mediterranean Sea, doi:10.1594/PANGAEA.771907, 2011.
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This gridded product visualizes 1960 - 2014 water body chlorophyll-a (mg/m^3) in the North Sea domain, for each season (winter: December – February; spring: March – May; summer: June – August; autumn: September – November). It is produced as a Diva 4D analysis, version 4.6.11: a reference field of all seasonal data between 1960-2014 was used; results were logit transformed to avoid negative/underestimated values in the interpolated results; error threshold masks L1 (0.3) and L2 (0.5) are included as well as the unmasked field. Every step of the time dimension corresponds to a 10-year moving average for each season. The depth dimension allows visualizing the gridded field at various depths.
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This tool will visualise data collected during surveys and research cruises with the RV Cefas Endeavour focusing on chlorophyll a and phytoplankton functional types. It will make the link between the in-situ measurement and the Earth Observation and modelling and will develop the combined data set approach for the descriptors 1, 4, and 5 for MSFD. Primarily, developed in R shiny, with a tab for exploring each dataset, and a front page where datasets can be visualised concurrently, the tool will propose products using the outputs from the different approaches and will be included in the products and services Cefas portfolio.
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Seasonal climatology of Water body chlorophyll-a for Loire river for the period 1971-2021 and for the following seasons: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Observation data span from 1971 to 2021. Depth levels (m): [0.0, 2.0, 4.0, 6.0, 8.0, 10.0, 15.0, 20.0, 25.0, 30.0, 35.0, 40.0, 45.0, 50.0, 60.0, 70.0, 80.0, 90.0, 100.0, 110.0, 120.0, 130.0]. Data sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Description of DIVAnd analysis: the computation was done with DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.4, using GEBCO 15 sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps is 0.01 degrees. Horizontal correlation length is defined seasonally (in meters): 14000 (winter), 52000 (spring), 42000 (summer), 125000 (autumn). Vertical correlation length was optimized and vertically filtered and a seasonally-averaged profile was used (DIVAnd.fitvertlen). Signal-to-noise ratio was fixed to 1 for vertical profiles and 0.1 for time series to account for the redundancy in the time series observations. A logarithmic transformation (DIVAnd.Anam.loglin) was applied to the data prior to the analysis to avoid unrealistic negative values. Background field: the vertically-filtered data mean profile is substracted from the data. Detrending of data: no, advection constraint applied: no. Units: mg/m3.
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Moving 6-year analysis of Water body chlorophyll-a in the NorthEast Atlantic for each season: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December. Every year of the time dimension corresponds to the 6-year centred average of each season. 6-year periods span from 1971/1976 until 2016/2021. Observation data span from 1971 to 2021. High-frequency observation trails were filtered to a 3h temporal resolution. Depth levels (IODE standard depths): [0.0, 5.0, 10.0, 20.0, 30.0, 40.0, 50.0, 75.0, 100.0, 125.0, 150.0, 200.0, 250.0, 300.0]. Data sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Descrption of DIVAnd analysis: the computation was done with DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.4, using GEBCO 30 sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps is 0.1 degrees. Horizontal correlation length varies from 200km in open sea regions to 50km at the coast. Vertical correlation length is defined as twice the vertical resolution. Signal-to-noise ratio was fixed to 1 for vertical profiles and 0.1 for time series to account for the redundancy in the time series observations. A logarithmic transformation (DIVAnd.Anam.loglin) was applied to the data prior to the analysis to avoid unrealistic negative values. Background field: a vertically-filtered profile of the seasonal data mean value (including all years) is substracted from the data. Detrending of data: no, advection constraint applied: no. Units: mg/m3.
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POSEIDON is an operational marine monitoring, forecasting and information system for the Greek Seas. The observing component is a distributed infrastructure made by three coastal buoys (Saronikos buoy-SB, Heraklion Coastal Buoy-HCB and Athos buoy-AB) and one Ferrybox (PFB). A calibration laboratory) is supporting the observing activities. The Ferrybox is installed on board H/S/F “Knossos Palace” and is equipped with sensors measuring T, C/S, DO, pH, fluorescence and turbidity. It is the only Ferry Box in the Mediterranean operating daily along the route Heraklion – Piraeus.
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Seasonal Climatology of Chlorophyll-a for Loire River for the period 1976-2020 and for the following seasons: - winter: January-March, - spring: April-June, - summer: July-September, - autumn: October-December Observational data span from 1976 to 2020. Depth levels (m): -125.0, -100.0, -75.0, -50.0,-40.0, -30.0, -25.0, -20.0, -15.0, -10.0, -8.0, -6.0, -4.0, -2.0, -0.0 Data Sources: observational data from SeaDataNet/EMODNet Chemistry Data Network. Description of DIVAnd analysis: The computation was done with DIVAnd (Data-Interpolating Variational Analysis in n dimensions), version 2.7.4, using GEBCO 30sec topography for the spatial connectivity of water masses. The horizontal resolution of the produced DIVAnd maps grids is 0.01 degrees. Correlation length was optimized and filtered vertically and a seasonally-averaged profile was used. Signal to noise ratio was fixed to 1 for vertical profiles and to 0.1 for time series to account for the redundancy in the time series observations. Logarithmic transformation applied to the data prior to the analysis. Background field: the data mean value is subtracted from the data. . Detrending of data: no, Advection constraint applied: no. Units: mg/m^3.