The indiSeaS project is co-funded by the Intergovernmental Oceanographic Commission (IOC), the European Network of Excellence Euroceans, “'Institut de recherche pour le développement (IRD)” and the European project on Marine Ecosystem Evolution in a Changing Environment (MEECE). It is a multi-institutes collaborative effort. Scientific experts on ecosystems all over world calculate indicators and provide background information. The IndiSeas project aims at "Evaluating the status of marine ecosystems in a changing world”, using a set of different types of indicators to reflect the effects of multiple drivers on the states and trends of marine exploited ecosystems. It focuses on the effects of fishing, use of ecology, biodiversity, as well as climate and socio-economic indicators on world's marine ecosystems health. The objectives are to review IndiSeas datasets, present preliminary results to regional experts, discuss methods to be developed in each of the six task groups, establish work and publication plans for the future. Expertise from over 70 scientists, 49 research institutes and 36 countries.

MISSION ATLANTIC assesses the whole Atlantic, and ecosystem components at risk from natural hazards and the consequences of human activities, including individual regional Case Studies, and their interconnectivity. To do this, Mission Atlantic develops IEAs for seven regional Case Studies, in sub-Arctic and Tropical regions of the Atlantic Ocean, ranging from shelf seas to the mid-Atlantic Ridge: 1) Norwegian Sea 2) Celtic Sea 3) Canary Current 4) North Mid Atlantic Ridge 5) South Mid Atlantic Ridge 6) Benguela Current 7) South Brazilian Shelf

This is an short tutorial to show how to download OBIS/GBIF occurrence data for multiple species. The code has been written to be used in H2020 Mission Atlantic (No 862428) Project Task 3.4. The tutorial has been developed by Mireia Valle (github profile: MireiaValle, email: mvalle@azti.es) based on original code for sourcing OBIS and GBIF from Guillem Chust (email: gchust@azti.es) and some adaptations from Eduardo Ramirez. Affiliation: AZTI, Marine Research, Basque Research and Technology Alliance (BRTA). Txatxarramendi ugartea z/g, 48395 Sukarrieta - Bizkaia, Spain

The Copernicus Marine Service (or Copernicus Marine Environment Monitoring Service) is the marine component of the Copernicus Programme of the European Union. It provides free, regular and systematic authoritative information on the state of the Blue (physical), White (sea ice) and Green (biogeochemical) ocean, on a global and regional scale. It is funded by the European Commission (EC) and implemented by Mercator Ocean International. It is designed to serve EU policies and International legal Commitments related to Ocean Governance, to cater for the needs of society at large for global ocean knowledge and to boost the Blue Economy across all maritime sectors by providing free-of-charge state-of-the-art ocean data and information. It provides key inputs that support major EU and international policies and initiatives and can contribute to: combating pollution, marine protection, maritime safety and routing, sustainable use of ocean resources, developing marine energy resources, blue growth, climate monitoring, weather forecasting, and more. It also aims to increase awareness amongst the general public by providing European and global citizens with information about ocean-related issues.

Classification of the Atlantic Ocean seabed into broad-scale benthic habitats employing a hierarchical top-down clustering approach aimed at informing Marine Spatial Planning. This work was performed at the University of Plymouth in 2021 with data provided by a wide group of partners representing the nations surrounding the Atlantic Ocean. It classifies continuous environmental data into discrete classes that can be compared to observed biogeographical patterns at various scales. It has 3 levels of classification. For ease of use, a layer is provided for each level. Level 1 has 4 classes. Level 2 has 15 classes nested within level 1. Layers indices are 2 digits (1[level1 class index]1[level 2 class index]). Level 3 has 157 classes nested within level 2 and class names have 4 digits (1digit[level1 class index]1[level 2 class index]2[level 3 class index]). Note that the classification was performed for the whole world and thus it has more classes than in the presented layer.

Classification of the seabed in the Atlantic Ocean into broad-scale benthic habitats employing a non-hierarchical top-down clustering approach aimed at informing Marine Spatial Planning. This work was performed at the University of Plymouth in 2021 with data provided by a wide group of partners representing the nations surrounding the Atlantic Ocean. It classifies continuous environmental data into discrete classes that can be compared to observed biogeographical patterns at various scales. It has 3 levels of classification. The numbers in the raster layer correspond to individual classes. Description of these classes is given in McQuaid, K.A. et al. (2023).

Climatological monthly means output (physical variables) from the global hydrodynamic-biogeochemical model (NEMO-ERSEM) by the Plymouth Marine Laboratory (PML) within the framework of the project Mission Atlantic (https://missionatlantic.eu/). This 40-year monthly means netcdf file of 1 degree regular grid resolution is a sample aiming to show the results of the model in the geonode. The variables included in this netcdf are: sea water absolute salinity (so_abs, units: psu), sea water conservative temperature (thetao_con, units: C°), mixed layer depth (mldr10_1, units: m), latitude (lat, units: degrees), longitude (lon, units: degrees), time (time, units: seconds since 1900-01-01 00:00:00), depth [height] (z, units: m). The original model output files are stored with the data provider at the Plymouth Marine Laboratory.

This dataset comprises the global frequency, classification and distribution of marine heat waves (MHWs) from 1996-2020, in Chauhan et al. 2023 (https://doi.org/10.3389/fmars.2023.1177571). The classification was done based on their attributes and using different baselines. Daily SST values were extracted from the NOAA-OISST v2 high-resolution (0.25°) dataset from 1982-2020. MHWs were detected using the method presented by Hobday et al. 2016 (https://doi.org/10.1016/j.pocean.2015.12.014), and by using the 95th percentile of the accumulated temperature distribution to flag the extreme events. A shifting baseline of 8-year rolling period was selected between the years 1982-1996, since this period shows relatively stable maximum values of temperature across different ocean regions. The shifting baseline aims to account for the decadal changes of westerly winds, temperatures and ocean gyres circulations. The classification was done using the KMeans clustering algorithm to identify the relevant features of MHWs and classify them into separate groups based on feature similarities. This algorithm takes MHW features, namely duration, maximum intensity, rate onset and rate decline, as input vectors and applies clustering in the 4-dimensional feature space where each data point represents an MHW event. Note that all the MHWs features are standardized because unequal variances can put more weight on variables with smaller variances. This record comprehends the geospatial datasets of: Average number of MHW days per year (i.e., the sum of all MHW days divided by the total number of years, 1996-2020). Average cumulative intensity per year (i.e., the sum of cumulative intensity divided by the total number of years, 1996-2020). Total number of MHW events across the different periods averaged on the total number of years (1989-2020). The period 1982-1988 was only used as an initial baseline without calculating MHWs. Spatial distribution of three MHW categories: moderate MHWs, abrupt and Intense MHWs and extreme MHWs; displaying the total number of MHW days normalized by the number of years considered (i.e., 1989-2020). Distribution of Extreme MHWs across the different periods (A) 1989-1996, (B) 1997-2004, (C) 2005-2012, (D) 2013-2020. The relative frequency (γ) is a ratio of extreme MHWs in a specific period and all extreme MHWs in the same cluster for all periods.

3-D habitat suitability maps (HSM) or probability of occurrence maps, built using Shape-Constrained Generalized Additive Models (SC-GAMs) for the 30 main commercial species of the Atlantic region. Predictor variables for each species were selected from: sea water temperature, salinity, nitrate, net primary productivity, distance to seafloor, distance to coast, and relative position to mixed layer depth. Each species HSM contains 47 maps, one per depth level from 0 to 1000 m. Probability values of each map range from 0 (unsuitable habitat) to 1 (optimal habitat). For depth levels below the 0.99 quantile of the depth values found on the species occurrence data, NA values were assigned. Maps have been masked to species native range regions. See Valle et al. (2024) in Ecological Modelling 490:110632 (https://doi.org/10.1016/j.ecolmodel.2024.110632 ), for more details.